Wall clock time and date at job start Mon Mar 30 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38868 * 119.24291 * 2 1 4 4 C 1.36887 * 119.79472 * 179.97438 * 3 2 1 5 5 C 1.41128 * 118.39635 * 359.73881 * 4 3 2 6 6 C 1.40882 * 120.71997 * 180.28226 * 5 4 3 7 7 H 1.08007 * 119.99680 * 155.84399 * 6 5 4 8 8 C 1.40073 * 120.00268 * 335.84605 * 6 5 4 9 9 N 1.30777 * 119.99762 * 344.23877 * 8 6 5 10 10 Si 1.86794 * 120.00194 * 164.24336 * 8 6 5 11 11 H 1.48508 * 109.47088 * 59.99647 * 10 8 6 12 12 H 1.48508 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47451 * 299.99923 * 10 8 6 14 14 C 1.41861 * 118.55774 * 0.49727 * 5 4 3 15 15 C 1.47828 * 119.99176 * 179.75989 * 14 5 4 16 16 C 1.39681 * 120.55466 * 309.06300 * 15 14 5 17 17 N 1.31640 * 120.60519 * 179.97438 * 16 15 14 18 18 C 1.31943 * 121.91467 * 359.97438 * 17 16 15 19 19 C 1.38584 * 121.06117 * 0.25790 * 18 17 16 20 20 F 1.35098 * 120.36705 * 179.71888 * 19 18 17 21 21 C 1.38573 * 119.26375 * 359.49667 * 19 18 17 22 22 C 1.50695 * 120.86643 * 180.23890 * 21 19 18 23 23 N 1.31740 * 119.24665 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46960 * 270.02081 * 1 2 3 25 25 H 1.09000 * 109.47341 * 30.02039 * 1 2 3 26 26 H 1.08996 * 109.46903 * 150.02180 * 1 2 3 27 27 H 1.07995 * 120.10312 * 0.02692 * 3 2 1 28 28 H 1.08001 * 120.80377 * 179.97438 * 4 3 2 29 29 H 0.97000 * 119.99665 * 180.02562 * 9 8 6 30 30 H 1.07996 * 119.69551 * 359.94724 * 16 15 14 31 31 H 1.08000 * 119.47117 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.47182 * 267.99365 * 22 21 19 33 33 H 1.08994 * 109.47311 * 27.99814 * 22 21 19 34 34 H 1.09008 * 109.46488 * 147.99600 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2249 0.0005 5 6 4.2373 -0.0101 0.0067 6 6 5.6455 -0.0536 0.0135 7 1 6.1570 -0.9224 0.4008 8 6 6.3821 1.0299 -0.4820 9 7 5.7964 1.9349 -1.2223 10 14 8.2011 1.1821 -0.0853 11 1 8.9220 -0.0087 -0.6030 12 1 8.7464 2.4068 -0.7242 13 1 8.3814 1.2687 1.3862 14 6 3.4753 -1.2066 0.0013 15 6 4.1582 -2.5177 0.0022 16 6 5.1628 -2.7957 -0.9278 17 7 5.7719 -3.9626 -0.9276 18 6 5.4658 -4.9091 -0.0607 19 6 4.4776 -4.7145 0.8912 20 9 4.1716 -5.6953 1.7684 21 6 3.8100 -3.5010 0.9362 22 6 2.7331 -3.2486 1.9596 23 7 2.1507 -1.1495 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6348 2.1407 0.0004 28 1 4.0984 2.1578 0.0001 29 1 6.3066 2.6849 -1.5657 30 1 5.4419 -2.0465 -1.6538 31 1 5.9907 -5.8523 -0.0965 32 1 1.7635 -3.5184 1.5409 33 1 2.9263 -3.8517 2.8467 34 1 2.7305 -2.1930 2.2314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244833079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:16 Heat of formation + Delta-G solvation = -13.354900 kcal Electronic energy + Delta-G solvation = -20366.953662 eV Core-core repulsion = 17177.637522 eV Total energy + Delta-G solvation = -3189.316139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.94626 -41.27959 -39.95055 -36.21969 -35.22138 -33.43647 -32.56581 -31.10244 -29.58208 -28.78727 -26.35865 -24.78987 -23.42409 -22.52713 -22.12257 -19.30295 -18.42094 -18.20128 -17.38646 -17.24349 -16.83867 -16.41649 -15.97343 -15.57119 -15.05314 -14.68680 -14.49913 -14.30946 -13.98502 -13.83279 -13.62792 -13.58016 -13.45130 -13.22187 -13.01979 -12.76053 -12.63618 -12.58231 -12.20279 -11.76189 -11.21288 -10.72181 -10.50562 -10.14202 -9.95355 -9.80236 -9.25567 -8.73776 -6.44361 -0.12481 0.08058 0.80483 1.08848 1.36715 1.45864 1.50459 2.13684 2.63172 2.70024 3.06162 3.41875 3.62606 3.69058 3.77471 3.83633 4.12965 4.40058 4.53831 4.61272 4.66697 4.69232 4.76867 4.86768 4.92128 5.00302 5.03937 5.07530 5.17289 5.26443 5.33396 5.38927 5.69336 5.80141 5.93090 6.03449 6.44959 6.68371 6.74416 6.89670 7.69641 8.14983 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.008971 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.940776 B = 3120.418579 C = 4842.732438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.017 4.017 3 C -0.141 4.141 4 C -0.150 4.150 5 C 0.061 3.939 6 C -0.457 4.457 7 H 0.078 0.922 8 C 0.044 3.956 9 N -0.804 5.804 10 Si 0.972 3.028 11 H -0.261 1.261 12 H -0.262 1.262 13 H -0.261 1.261 14 C -0.004 4.004 15 C -0.016 4.016 16 C 0.105 3.895 17 N -0.476 5.476 18 C 0.061 3.939 19 C 0.039 3.961 20 F -0.129 7.129 21 C -0.081 4.081 22 C -0.089 4.089 23 N -0.452 5.452 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.296 0.704 30 H 0.152 0.848 31 H 0.196 0.804 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 -4.332 3.113 5.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.176 4.176 5 C 0.056 3.944 6 C -0.485 4.485 7 H 0.096 0.904 8 C -0.174 4.174 9 N -0.428 5.428 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.186 1.186 13 H -0.186 1.186 14 C -0.142 4.142 15 C -0.019 4.019 16 C -0.052 4.052 17 N -0.184 5.184 18 C -0.097 4.097 19 C 0.018 3.982 20 F -0.107 7.107 21 C -0.090 4.090 22 C -0.145 4.145 23 N -0.160 5.160 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.170 0.830 31 H 0.213 0.787 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.408 -5.065 2.374 5.768 hybrid contribution 0.586 1.278 0.694 1.568 sum -0.822 -3.787 3.068 4.943 Atomic orbital electron populations 1.20340 0.88108 1.02227 1.01969 1.21035 0.97139 0.87991 1.09810 1.21593 0.94855 0.98699 1.00990 1.21524 0.93744 0.98415 1.03875 1.18572 0.94629 0.91511 0.89691 1.19635 0.91165 1.02604 1.35086 0.90414 1.26684 1.05346 0.93617 0.91753 1.69763 1.40736 1.10245 1.22020 0.85374 0.76324 0.79230 0.79835 1.18495 1.18630 1.18560 1.19290 0.88889 0.90833 1.15188 1.19253 0.95649 0.92481 0.94500 1.22908 0.92124 0.93321 0.96883 1.67689 1.26284 1.01212 1.23179 1.23265 0.95363 1.00138 0.90957 1.18509 1.00077 0.86418 0.93245 1.91462 1.92425 1.59879 1.66957 1.20753 0.98375 0.92165 0.97715 1.20500 0.96026 1.02111 0.95904 1.66948 1.09086 1.30023 1.09987 0.91382 0.90618 0.92356 0.85464 0.86123 0.89326 0.83030 0.78726 0.89994 0.90234 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.18 10.15 71.24 0.72 -1.45 16 2 C -0.02 -0.71 6.79 42.73 0.29 -0.42 16 3 C -0.14 -6.06 9.64 22.10 0.21 -5.85 16 4 C -0.15 -7.25 8.75 22.66 0.20 -7.05 16 5 C 0.06 3.04 5.59 -21.03 -0.12 2.92 16 6 C -0.46 -22.45 7.28 23.36 0.17 -22.28 16 7 H 0.08 3.82 6.56 -2.91 -0.02 3.80 16 8 C 0.04 2.04 5.21 85.30 0.44 2.49 16 9 N -0.80 -37.87 10.85 21.85 0.24 -37.63 16 10 Si 0.97 35.64 29.59 68.60 2.03 37.67 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 13 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 14 C 0.00 -0.21 5.47 42.47 0.23 0.02 16 15 C -0.02 -0.69 5.03 -19.96 -0.10 -0.79 16 16 C 0.11 4.45 9.17 85.07 0.78 5.23 16 17 N -0.48 -18.03 10.34 -194.47 -2.01 -20.04 16 18 C 0.06 1.96 11.16 84.76 0.95 2.90 16 19 C 0.04 1.32 7.28 22.43 0.16 1.48 16 20 F -0.13 -3.91 16.57 44.97 0.75 -3.16 16 21 C -0.08 -3.12 5.95 -19.35 -0.12 -3.23 16 22 C -0.09 -3.09 8.87 71.23 0.63 -2.46 16 23 N -0.45 -20.62 8.95 -171.13 -1.53 -22.15 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 28 H 0.12 5.98 6.16 -2.91 -0.02 5.96 16 29 H 0.30 12.56 8.29 -92.71 -0.77 11.79 16 30 H 0.15 6.77 7.39 -2.91 -0.02 6.75 16 31 H 0.20 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.08 2.36 7.67 -2.39 -0.02 2.34 16 34 H 0.06 2.18 7.00 -2.38 -0.02 2.17 16 Total: -1.00 -54.39 295.66 5.06 -49.33 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 1.13 Total: 24.48 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.46 Total: -28.49 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -3.31 Total: -79.83 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.75 Total: -3.16 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -54.39 5.06 -49.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244833079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.971 kcal (2) G-P(sol) polarization free energy of solvation -54.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds