Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39041 * 119.99795 * 2 1 4 4 C 1.38926 * 119.64832 * 359.97438 * 3 2 1 5 5 C 1.39440 * 118.95211 * 179.97438 * 4 3 2 6 6 C 1.48379 * 120.86088 * 180.02562 * 5 4 3 7 7 C 1.39814 * 119.96944 * 0.02562 * 6 5 4 8 8 C 1.38221 * 120.42594 * 179.97438 * 7 6 5 9 9 C 1.38084 * 120.34893 * 0.02562 * 8 7 6 10 10 F 1.35091 * 120.03846 * 180.02562 * 9 8 7 11 11 C 1.41034 * 119.91558 * 0.02562 * 9 8 7 12 12 C 1.41323 * 120.20441 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99709 * 335.78925 * 12 11 9 14 14 C 1.39922 * 119.99964 * 155.51165 * 12 11 9 15 15 N 1.30849 * 120.00157 * 342.34865 * 14 12 11 16 16 Si 1.86807 * 119.99911 * 162.34916 * 14 12 11 17 17 H 1.48491 * 109.46902 * 90.00009 * 16 14 12 18 18 H 1.48499 * 109.46967 * 210.00134 * 16 14 12 19 19 H 1.48496 * 109.46686 * 329.99943 * 16 14 12 20 20 C 1.38699 * 119.96189 * 180.30239 * 6 5 4 21 21 C 1.39976 * 118.27490 * 0.27965 * 5 4 3 22 22 C 1.37798 * 119.18888 * 359.42720 * 21 5 4 23 23 N 1.32030 * 120.97657 * 0.58918 * 22 21 5 24 24 H 1.08997 * 109.47537 * 300.00336 * 1 2 3 25 25 H 1.08997 * 109.47128 * 60.00202 * 1 2 3 26 26 H 1.09004 * 109.46559 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00111 * 179.97438 * 2 1 3 28 28 H 1.08003 * 120.51992 * 0.02682 * 4 3 2 29 29 H 1.08004 * 119.78836 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.82764 * 179.97438 * 8 7 6 31 31 H 0.97000 * 120.00358 * 180.02562 * 15 14 12 32 32 H 1.07995 * 120.17253 * 0.02562 * 20 6 5 33 33 H 1.07992 * 120.40750 * 179.70372 * 21 5 4 34 34 H 1.07997 * 119.51391 * 180.32133 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1602 1.2042 0.0000 4 6 1.4582 2.4030 -0.0005 5 6 2.1699 3.6020 0.0000 6 6 1.4632 4.9067 0.0000 7 6 0.0656 4.9439 0.0000 8 6 -0.6025 6.1539 0.0006 9 6 0.1035 7.3407 0.0006 10 9 -0.5558 8.5198 0.0017 11 6 1.5137 7.3201 -0.0005 12 6 2.2424 8.5310 0.0001 13 1 1.7896 9.4339 -0.3823 14 6 3.5484 8.5614 0.5014 15 7 3.9762 7.5939 1.2716 16 14 4.6811 9.9832 0.0712 17 1 4.5324 11.0585 1.0844 18 1 6.0880 9.5081 0.0565 19 1 4.3234 10.5128 -1.2691 20 6 2.1898 6.0881 -0.0057 21 6 3.5684 3.5430 -0.0049 22 6 4.1891 2.3127 0.0019 23 7 3.4846 1.1961 0.0013 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.9501 -0.8400 0.0004 28 1 0.3781 2.4061 -0.0005 29 1 -0.4958 4.0212 -0.0004 30 1 -1.6823 6.1714 0.0002 31 1 4.8815 7.6151 1.6194 32 1 3.2694 6.0613 -0.0107 33 1 4.1539 4.4504 -0.0095 34 1 5.2679 2.2610 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244972202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = 6.072717 kcal Electronic energy + Delta-G solvation = -19729.775260 eV Core-core repulsion = 16541.301565 eV Total energy + Delta-G solvation = -3188.473695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.33005 -39.80896 -37.48390 -35.49922 -34.05241 -32.45250 -30.11692 -29.48395 -28.36463 -26.17684 -25.37069 -23.13139 -22.32670 -20.89771 -20.08474 -17.84357 -16.73020 -16.51535 -16.11738 -15.43052 -14.94512 -14.68837 -14.49942 -14.26860 -14.09162 -13.79768 -13.61331 -13.03015 -12.81983 -12.54757 -12.15891 -12.01237 -11.77055 -11.45994 -11.33617 -11.17236 -10.99993 -10.59480 -10.15591 -9.93815 -9.58230 -9.46769 -9.14399 -9.04408 -7.73525 -7.44566 -7.19361 -6.91348 -4.53230 1.45077 1.83876 2.62469 2.85740 3.00510 3.04159 3.12642 3.37831 3.82422 4.27535 4.60148 4.97808 5.15211 5.26947 5.37982 5.44453 5.55221 5.67169 5.69363 5.82609 5.85490 6.03505 6.13981 6.37102 6.43744 6.70747 6.76912 6.92340 7.03261 7.11641 7.27256 7.39432 7.43426 7.75266 7.78406 7.81300 7.94957 8.36418 8.55654 8.59853 8.67290 9.99168 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.005574 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.040319 B = 5022.522083 C = 6318.946013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.739 5.739 3 C 0.392 3.608 4 C -0.239 4.239 5 C 0.070 3.930 6 C -0.064 4.064 7 C -0.197 4.197 8 C -0.124 4.124 9 C -0.021 4.021 10 F -0.162 7.162 11 C 0.080 3.920 12 C -0.451 4.451 13 H 0.085 0.915 14 C 0.076 3.924 15 N -0.787 5.787 16 Si 0.913 3.087 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.113 4.113 21 C -0.220 4.220 22 C 0.138 3.862 23 N -0.561 5.561 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.400 0.600 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.285 0.715 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -9.397 -1.668 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.373 5.373 3 C 0.158 3.842 4 C -0.263 4.263 5 C 0.062 3.938 6 C -0.065 4.065 7 C -0.217 4.217 8 C -0.143 4.143 9 C -0.042 4.042 10 F -0.141 7.141 11 C 0.077 3.923 12 C -0.479 4.479 13 H 0.103 0.897 14 C -0.143 4.143 15 N -0.411 5.411 16 Si 0.736 3.264 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.132 4.132 21 C -0.243 4.243 22 C -0.017 4.017 23 N -0.279 5.279 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.147 0.853 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.935 -10.179 -1.520 10.334 hybrid contribution 0.086 1.280 0.000 1.283 sum -0.849 -8.898 -1.519 9.067 Atomic orbital electron populations 1.21517 0.79467 1.02140 1.01466 1.44087 1.05362 1.05105 1.82754 1.18197 0.88306 0.86033 0.91692 1.21407 1.00652 0.90990 1.13252 1.19151 0.92682 0.92566 0.89370 1.18440 0.92843 0.90873 1.04338 1.20199 0.92783 0.95692 1.12978 1.20416 0.98154 0.91775 1.03950 1.17954 0.90575 0.79836 1.15813 1.91276 1.81048 1.46685 1.95061 1.17554 0.89053 0.94388 0.91283 1.19527 0.97349 0.95880 1.35181 0.89725 1.25928 0.98491 0.97509 0.92326 1.69795 1.18371 1.31429 1.21544 0.86224 0.78786 0.80925 0.80441 1.19268 1.19805 1.18240 1.21390 1.00086 0.89485 1.02266 1.22059 0.94753 0.99385 1.08057 1.22165 0.99067 0.86879 0.93595 1.67001 1.06029 1.32501 1.22390 0.92796 0.92802 0.90848 0.76534 0.85276 0.88074 0.87796 0.90360 0.84729 0.84500 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 9.92 59.85 0.59 1.56 16 2 N -0.74 -9.43 5.89 -67.24 -0.40 -9.83 16 3 C 0.39 6.50 7.65 -155.03 -1.19 5.32 16 4 C -0.24 -4.22 8.71 -38.88 -0.34 -4.56 16 5 C 0.07 1.40 5.91 -104.62 -0.62 0.78 16 6 C -0.06 -1.44 5.87 -104.96 -0.62 -2.05 16 7 C -0.20 -4.16 9.45 -39.00 -0.37 -4.53 16 8 C -0.12 -2.73 9.99 -39.64 -0.40 -3.13 16 9 C -0.02 -0.53 7.31 -38.58 -0.28 -0.81 16 10 F -0.16 -4.00 16.70 2.25 0.04 -3.97 16 11 C 0.08 2.09 5.58 -106.80 -0.60 1.50 16 12 C -0.45 -11.70 8.78 -37.78 -0.33 -12.03 16 13 H 0.08 2.18 7.72 -52.48 -0.41 1.77 16 14 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 15 N -0.79 -19.12 10.96 55.55 0.61 -18.51 16 16 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.11 -2.76 8.08 -38.55 -0.31 -3.07 16 21 C -0.22 -4.11 9.49 -39.09 -0.37 -4.48 16 22 C 0.14 2.31 11.16 -17.63 -0.20 2.11 16 23 N -0.56 -9.69 10.38 -12.52 -0.13 -9.82 16 24 H 0.05 0.54 7.93 -51.93 -0.41 0.12 16 25 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.40 4.48 8.95 -40.82 -0.37 4.12 16 28 H 0.13 2.08 4.96 -52.48 -0.26 1.82 16 29 H 0.10 1.85 6.27 -52.48 -0.33 1.52 16 30 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 32 H 0.14 3.30 4.38 -52.49 -0.23 3.07 16 33 H 0.14 2.58 6.32 -52.49 -0.33 2.25 16 34 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -28.08 294.86 -8.72 -36.80 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.15 Total: 9.62 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -5.11 Total: -21.66 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.08 Total: -38.16 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.08 -8.72 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244972202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.877 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds