Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.39041 * 119.99795 * 2 1 4 4 C 1.38926 * 119.64832 * 359.97438 * 3 2 1 5 5 C 1.39440 * 118.95211 * 179.97438 * 4 3 2 6 6 C 1.48379 * 120.86088 * 180.02562 * 5 4 3 7 7 C 1.39814 * 119.96944 * 0.02562 * 6 5 4 8 8 C 1.38221 * 120.42594 * 179.97438 * 7 6 5 9 9 C 1.38084 * 120.34893 * 0.02562 * 8 7 6 10 10 F 1.35091 * 120.03846 * 180.02562 * 9 8 7 11 11 C 1.41034 * 119.91558 * 0.02562 * 9 8 7 12 12 C 1.41323 * 120.20441 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99709 * 335.78925 * 12 11 9 14 14 C 1.39922 * 119.99964 * 155.51165 * 12 11 9 15 15 N 1.30849 * 120.00157 * 342.34865 * 14 12 11 16 16 Si 1.86807 * 119.99911 * 162.34916 * 14 12 11 17 17 H 1.48491 * 109.46902 * 90.00009 * 16 14 12 18 18 H 1.48499 * 109.46967 * 210.00134 * 16 14 12 19 19 H 1.48496 * 109.46686 * 329.99943 * 16 14 12 20 20 C 1.38699 * 119.96189 * 180.30239 * 6 5 4 21 21 C 1.39976 * 118.27490 * 0.27965 * 5 4 3 22 22 C 1.37798 * 119.18888 * 359.42720 * 21 5 4 23 23 N 1.32030 * 120.97657 * 0.58918 * 22 21 5 24 24 H 1.08997 * 109.47537 * 300.00336 * 1 2 3 25 25 H 1.08997 * 109.47128 * 60.00202 * 1 2 3 26 26 H 1.09004 * 109.46559 * 180.02562 * 1 2 3 27 27 H 0.96999 * 120.00111 * 179.97438 * 2 1 3 28 28 H 1.08003 * 120.51992 * 0.02682 * 4 3 2 29 29 H 1.08004 * 119.78836 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.82764 * 179.97438 * 8 7 6 31 31 H 0.97000 * 120.00358 * 180.02562 * 15 14 12 32 32 H 1.07995 * 120.17253 * 0.02562 * 20 6 5 33 33 H 1.07992 * 120.40750 * 179.70372 * 21 5 4 34 34 H 1.07997 * 119.51391 * 180.32133 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1602 1.2042 0.0000 4 6 1.4582 2.4030 -0.0005 5 6 2.1699 3.6020 0.0000 6 6 1.4632 4.9067 0.0000 7 6 0.0656 4.9439 0.0000 8 6 -0.6025 6.1539 0.0006 9 6 0.1035 7.3407 0.0006 10 9 -0.5558 8.5198 0.0017 11 6 1.5137 7.3201 -0.0005 12 6 2.2424 8.5310 0.0001 13 1 1.7896 9.4339 -0.3823 14 6 3.5484 8.5614 0.5014 15 7 3.9762 7.5939 1.2716 16 14 4.6811 9.9832 0.0712 17 1 4.5324 11.0585 1.0844 18 1 6.0880 9.5081 0.0565 19 1 4.3234 10.5128 -1.2691 20 6 2.1898 6.0881 -0.0057 21 6 3.5684 3.5430 -0.0049 22 6 4.1891 2.3127 0.0019 23 7 3.4846 1.1961 0.0013 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.9501 -0.8400 0.0004 28 1 0.3781 2.4061 -0.0005 29 1 -0.4958 4.0212 -0.0004 30 1 -1.6823 6.1714 0.0002 31 1 4.8815 7.6151 1.6194 32 1 3.2694 6.0613 -0.0107 33 1 4.1539 4.4504 -0.0095 34 1 5.2679 2.2610 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244972202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = -8.903733 kcal Electronic energy + Delta-G solvation = -19730.424688 eV Core-core repulsion = 16541.301565 eV Total energy + Delta-G solvation = -3189.123122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.24106 -41.17016 -39.19061 -36.63734 -35.81646 -33.98930 -31.83844 -30.81454 -30.01270 -27.50174 -26.87486 -24.62455 -23.84478 -22.50178 -21.67579 -19.49121 -18.22885 -18.11888 -17.63863 -17.07308 -16.41973 -16.36748 -16.01210 -15.60827 -15.58661 -15.17355 -14.99555 -14.45943 -14.26875 -14.12401 -13.81509 -13.51168 -13.16579 -12.97451 -12.86161 -12.79200 -12.57985 -12.19899 -11.91857 -11.34269 -11.29932 -11.05911 -10.69942 -10.40269 -9.56799 -8.97382 -8.70008 -8.59452 -6.44914 -0.10682 0.48912 0.86828 1.17983 1.37790 1.48583 1.54289 2.18275 2.33284 2.59551 3.08315 3.55367 3.68178 3.86380 3.98450 4.21477 4.27392 4.35229 4.46352 4.57724 4.59235 4.69751 4.87871 4.92950 4.97561 5.01024 5.10443 5.20382 5.49427 5.52621 5.65122 5.69916 5.95277 6.01481 6.11888 6.18142 6.49377 6.68543 6.73588 6.81295 7.28643 8.22835 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.005574 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.040319 B = 5022.522083 C = 6318.946013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.728 5.728 3 C 0.390 3.610 4 C -0.239 4.239 5 C 0.044 3.956 6 C -0.064 4.064 7 C -0.190 4.190 8 C -0.120 4.120 9 C -0.057 4.057 10 F -0.169 7.169 11 C 0.052 3.948 12 C -0.492 4.492 13 H 0.072 0.928 14 C 0.042 3.958 15 N -0.812 5.812 16 Si 0.982 3.018 17 H -0.263 1.263 18 H -0.257 1.257 19 H -0.261 1.261 20 C -0.134 4.134 21 C -0.238 4.238 22 C 0.147 3.853 23 N -0.568 5.568 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.410 0.590 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.295 0.705 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 -11.656 -1.740 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.361 5.361 3 C 0.154 3.846 4 C -0.263 4.263 5 C 0.037 3.963 6 C -0.064 4.064 7 C -0.209 4.209 8 C -0.139 4.139 9 C -0.077 4.077 10 F -0.148 7.148 11 C 0.049 3.951 12 C -0.521 4.521 13 H 0.090 0.910 14 C -0.175 4.175 15 N -0.436 5.436 16 Si 0.802 3.198 17 H -0.188 1.188 18 H -0.181 1.181 19 H -0.185 1.185 20 C -0.154 4.154 21 C -0.260 4.260 22 C -0.009 4.009 23 N -0.286 5.286 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.126 0.874 27 H 0.245 0.755 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.093 -12.485 -1.587 12.633 hybrid contribution 0.042 1.739 0.035 1.740 sum -1.051 -10.746 -1.552 10.909 Atomic orbital electron populations 1.21792 0.77420 1.04596 1.01488 1.44284 1.06666 1.04174 1.81024 1.18467 0.88314 0.87139 0.90701 1.21501 1.01392 0.90502 1.12927 1.19161 0.93364 0.92255 0.91563 1.18766 0.93671 0.91444 1.02556 1.20630 0.92551 0.96794 1.10928 1.20762 0.99738 0.90926 1.02432 1.18313 0.90761 0.80686 1.17921 1.91238 1.80997 1.47245 1.95330 1.17921 0.90023 0.95175 0.91977 1.19678 0.99156 0.95728 1.37533 0.91014 1.26689 0.99069 1.00163 0.91550 1.69819 1.19168 1.32882 1.21774 0.85201 0.77192 0.77583 0.79824 1.18768 1.18117 1.18531 1.21370 0.99940 0.90005 1.04069 1.22057 0.94529 0.99912 1.09544 1.22586 1.00516 0.85926 0.91876 1.67151 1.06466 1.32398 1.22633 0.92777 0.92628 0.87368 0.75456 0.83680 0.84472 0.84705 0.89425 0.85600 0.85733 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 9.92 127.77 1.27 2.68 16 2 N -0.73 -16.09 5.89 -366.65 -2.16 -18.25 16 3 C 0.39 11.92 7.65 132.99 1.02 12.94 16 4 C -0.24 -7.93 8.71 22.72 0.20 -7.73 16 5 C 0.04 1.74 5.91 -19.87 -0.12 1.63 16 6 C -0.06 -2.86 5.87 -20.08 -0.12 -2.98 16 7 C -0.19 -7.77 9.45 22.65 0.21 -7.56 16 8 C -0.12 -5.20 9.99 22.23 0.22 -4.98 16 9 C -0.06 -2.90 7.31 22.92 0.17 -2.73 16 10 F -0.17 -8.67 16.70 44.97 0.75 -7.92 16 11 C 0.05 2.83 5.58 -21.27 -0.12 2.71 16 12 C -0.49 -26.90 8.78 23.44 0.21 -26.69 16 13 H 0.07 3.93 7.72 -2.91 -0.02 3.91 16 14 C 0.04 2.08 5.14 85.25 0.44 2.52 16 15 N -0.81 -40.66 10.96 21.82 0.24 -40.42 16 16 Si 0.98 37.53 29.60 68.60 2.03 39.56 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.13 -6.83 8.08 22.94 0.19 -6.64 16 21 C -0.24 -8.88 9.49 22.59 0.21 -8.66 16 22 C 0.15 4.68 11.16 84.56 0.94 5.62 16 23 N -0.57 -18.30 10.38 -193.51 -2.01 -20.31 16 24 H 0.05 0.87 7.93 -2.39 -0.02 0.85 16 25 H 0.06 0.88 7.92 -2.39 -0.02 0.86 16 26 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.41 7.72 8.95 -92.71 -0.83 6.89 16 28 H 0.15 4.21 4.96 -2.91 -0.01 4.19 16 29 H 0.14 4.55 6.27 -2.91 -0.02 4.53 16 30 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 32 H 0.13 6.50 4.38 -2.91 -0.01 6.49 16 33 H 0.12 4.88 6.32 -2.91 -0.02 4.86 16 34 H 0.18 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -62.65 294.86 3.90 -58.74 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.33 Total: 28.48 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.72 Total: -39.90 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.93 Total: -78.97 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.75 Total: -7.92 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -62.65 3.90 -58.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244972202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.839 kcal (2) G-P(sol) polarization free energy of solvation -62.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds