Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39044 * 120.00026 * 2 1 4 4 C 1.38890 * 119.63706 * 0.02562 * 3 2 1 5 5 C 1.39701 * 118.91664 * 179.97438 * 4 3 2 6 6 C 1.47942 * 120.88733 * 179.97438 * 5 4 3 7 7 C 1.39004 * 120.31454 * 309.98505 * 6 5 4 8 8 C 1.38460 * 119.95511 * 180.02562 * 7 6 5 9 9 F 1.35098 * 119.69761 * 179.97438 * 8 7 6 10 10 C 1.39178 * 120.60617 * 0.02562 * 8 7 6 11 11 C 1.36379 * 120.64407 * 359.94732 * 10 8 7 12 12 C 1.40786 * 120.01387 * 0.05468 * 11 10 8 13 13 C 1.40837 * 120.29600 * 180.24952 * 12 11 10 14 14 H 1.07992 * 120.00525 * 152.76422 * 13 12 11 15 15 C 1.40088 * 119.99590 * 332.76279 * 13 12 11 16 16 N 1.30768 * 120.00258 * 344.55628 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 164.55812 * 15 13 12 18 18 H 1.48502 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47388 * 119.99981 * 17 15 13 20 20 H 1.48503 * 109.47216 * 239.99985 * 17 15 13 21 21 C 1.40224 * 118.22462 * 0.25330 * 5 4 3 22 22 C 1.37747 * 119.15657 * 359.49995 * 21 5 4 23 23 N 1.32039 * 121.00977 * 0.51308 * 22 21 5 24 24 H 1.08996 * 109.47592 * 59.99258 * 1 2 3 25 25 H 1.09005 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46745 * 299.99466 * 1 2 3 27 27 H 0.96998 * 119.99565 * 180.02562 * 2 1 3 28 28 H 1.07998 * 120.53816 * 359.95228 * 4 3 2 29 29 H 1.07994 * 120.02350 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.67810 * 180.02562 * 10 8 7 31 31 H 1.07997 * 119.99294 * 180.02562 * 11 10 8 32 32 H 0.97008 * 120.00091 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.41655 * 179.72288 * 21 5 4 34 34 H 1.08000 * 119.49040 * 180.25229 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2042 0.0000 4 6 1.4582 2.4026 0.0005 5 6 2.1718 3.6035 0.0011 6 6 1.4684 4.9050 0.0011 7 6 0.4568 5.1558 -0.9187 8 6 -0.1963 6.3766 -0.9123 9 9 -1.1784 6.6150 -1.8089 10 6 0.1503 7.3609 0.0085 11 6 1.1387 7.1410 0.9222 12 6 1.8203 5.9092 0.9395 13 6 2.8383 5.6738 1.8838 14 1 3.0539 4.6657 2.2054 15 6 3.5712 6.7474 2.4059 16 7 3.5325 7.9139 1.8161 17 14 4.6038 6.5128 3.9448 18 1 4.4789 5.1099 4.4156 19 1 6.0264 6.8059 3.6358 20 1 4.1274 7.4359 5.0061 21 6 3.5727 3.5425 -0.0044 22 6 4.1908 2.3115 0.0004 23 7 3.4847 1.1957 -0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9499 -0.8401 -0.0004 28 1 0.3782 2.4059 0.0002 29 1 0.1810 4.3992 -1.6382 30 1 -0.3692 8.3077 0.0003 31 1 1.3988 7.9120 1.6322 32 1 4.0397 8.6574 2.1778 33 1 4.1595 4.4491 -0.0087 34 1 5.2695 2.2582 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244972493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = 4.729563 kcal Electronic energy + Delta-G solvation = -19988.655176 eV Core-core repulsion = 16800.123237 eV Total energy + Delta-G solvation = -3188.531938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.55554 -39.58838 -37.55590 -35.31309 -33.82859 -32.51686 -29.79997 -29.23512 -28.85257 -25.89109 -25.31407 -23.14542 -21.76705 -21.08362 -20.13983 -17.61851 -17.13800 -16.39758 -15.57489 -15.31395 -14.92435 -14.70297 -14.34745 -14.28444 -14.18710 -13.96370 -13.65944 -12.89655 -12.83004 -12.25458 -12.09281 -12.06012 -12.00329 -11.45416 -11.30844 -11.02422 -10.90674 -10.51168 -10.15403 -9.75539 -9.69285 -9.36501 -8.93464 -8.82676 -7.67684 -7.43921 -7.21176 -7.00461 -4.55677 1.80805 2.07918 2.52944 2.84124 2.97569 3.00929 3.04065 3.54259 3.77405 4.34144 4.61254 5.13613 5.28390 5.36962 5.45476 5.56079 5.73795 5.78742 5.89390 5.96646 6.00210 6.15131 6.18317 6.46931 6.64614 6.76225 6.88039 6.99155 7.14481 7.23832 7.26341 7.45870 7.58974 7.69279 7.81234 7.94327 7.99242 8.33866 8.58886 8.66076 8.75916 9.91710 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.008089 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.182701 B = 3460.558469 C = 5251.662505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.741 5.741 3 C 0.388 3.612 4 C -0.244 4.244 5 C 0.097 3.903 6 C -0.174 4.174 7 C -0.089 4.089 8 C -0.048 4.048 9 F -0.173 7.173 10 C -0.121 4.121 11 C -0.135 4.135 12 C 0.126 3.874 13 C -0.438 4.438 14 H 0.087 0.913 15 C 0.075 3.925 16 N -0.782 5.782 17 Si 0.908 3.092 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.270 1.270 21 C -0.200 4.200 22 C 0.127 3.873 23 N -0.564 5.564 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.399 0.601 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.285 0.715 33 H 0.137 0.863 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -7.217 -0.175 7.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.376 5.376 3 C 0.154 3.846 4 C -0.268 4.268 5 C 0.089 3.911 6 C -0.176 4.176 7 C -0.108 4.108 8 C -0.067 4.067 9 F -0.152 7.152 10 C -0.141 4.141 11 C -0.154 4.154 12 C 0.123 3.877 13 C -0.466 4.466 14 H 0.105 0.895 15 C -0.145 4.145 16 N -0.406 5.406 17 Si 0.732 3.268 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.195 1.195 21 C -0.223 4.223 22 C -0.028 4.028 23 N -0.283 5.283 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.233 0.767 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.103 -7.705 -0.190 7.786 hybrid contribution 0.035 0.632 0.485 0.797 sum -1.068 -7.073 0.295 7.159 Atomic orbital electron populations 1.21475 0.79672 1.01873 1.01370 1.44053 1.05211 1.05122 1.83193 1.18159 0.88336 0.85898 0.92201 1.21491 1.00221 0.91171 1.13957 1.18803 0.92456 0.91757 0.88090 1.18266 1.02741 0.95183 1.01446 1.20503 0.96180 0.94985 0.99177 1.17163 0.95835 0.97040 0.96705 1.91290 1.61269 1.95246 1.67433 1.20513 0.99562 0.97271 0.96732 1.20953 0.95400 0.99163 0.99922 1.17550 0.90659 0.89852 0.89655 1.19675 1.13436 0.94807 1.18662 0.89454 1.26006 0.96612 0.94351 0.97481 1.69768 1.33119 1.02209 1.35483 0.86226 0.79357 0.80221 0.80986 1.18059 1.19609 1.19494 1.22090 0.94852 0.98950 1.06365 1.22119 0.98865 0.87094 0.94698 1.66952 1.05949 1.32606 1.22744 0.93006 0.91051 0.92886 0.76727 0.85966 0.87919 0.88018 0.85398 0.90338 0.84526 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 9.92 59.85 0.59 1.71 16 2 N -0.74 -10.41 5.89 -67.25 -0.40 -10.80 16 3 C 0.39 6.96 7.65 -155.02 -1.19 5.77 16 4 C -0.24 -4.67 8.87 -38.79 -0.34 -5.01 16 5 C 0.10 2.05 4.92 -104.63 -0.51 1.53 16 6 C -0.17 -4.02 5.56 -104.25 -0.58 -4.60 16 7 C -0.09 -1.99 9.52 -39.22 -0.37 -2.37 16 8 C -0.05 -1.09 7.31 -39.15 -0.29 -1.38 16 9 F -0.17 -3.83 17.26 2.25 0.04 -3.79 16 10 C -0.12 -2.76 9.94 -39.90 -0.40 -3.16 16 11 C -0.14 -3.25 8.62 -39.29 -0.34 -3.59 16 12 C 0.13 3.08 5.55 -106.56 -0.59 2.49 16 13 C -0.44 -10.49 7.19 -37.91 -0.27 -10.76 16 14 H 0.09 2.10 6.68 -52.49 -0.35 1.75 16 15 C 0.08 1.72 5.17 -17.31 -0.09 1.63 16 16 N -0.78 -18.31 10.99 55.56 0.61 -17.70 16 17 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.20 -4.01 8.14 -39.02 -0.32 -4.33 16 22 C 0.13 2.30 11.16 -17.64 -0.20 2.10 16 23 N -0.56 -10.47 10.38 -12.53 -0.13 -10.60 16 24 H 0.05 0.58 7.92 -51.93 -0.41 0.16 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.61 7.92 -51.93 -0.41 0.19 16 27 H 0.40 4.95 8.95 -40.82 -0.37 4.58 16 28 H 0.12 2.19 6.70 -52.49 -0.35 1.84 16 29 H 0.10 2.10 8.05 -52.49 -0.42 1.68 16 30 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.13 3.11 6.26 -52.49 -0.33 2.78 16 32 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 33 H 0.14 2.82 7.41 -52.49 -0.39 2.43 16 34 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -26.58 297.37 -8.75 -35.33 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -3.43 Total: 10.72 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -4.89 Total: -19.95 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.08 Total: -39.11 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.58 -8.75 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244972493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.061 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds