Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39044 * 120.00026 * 2 1 4 4 C 1.38890 * 119.63706 * 0.02562 * 3 2 1 5 5 C 1.39701 * 118.91664 * 179.97438 * 4 3 2 6 6 C 1.47942 * 120.88733 * 179.97438 * 5 4 3 7 7 C 1.39004 * 120.31454 * 309.98505 * 6 5 4 8 8 C 1.38460 * 119.95511 * 180.02562 * 7 6 5 9 9 F 1.35098 * 119.69761 * 179.97438 * 8 7 6 10 10 C 1.39178 * 120.60617 * 0.02562 * 8 7 6 11 11 C 1.36379 * 120.64407 * 359.94732 * 10 8 7 12 12 C 1.40786 * 120.01387 * 0.05468 * 11 10 8 13 13 C 1.40837 * 120.29600 * 180.24952 * 12 11 10 14 14 H 1.07992 * 120.00525 * 152.76422 * 13 12 11 15 15 C 1.40088 * 119.99590 * 332.76279 * 13 12 11 16 16 N 1.30768 * 120.00258 * 344.55628 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 164.55812 * 15 13 12 18 18 H 1.48502 * 109.47235 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47388 * 119.99981 * 17 15 13 20 20 H 1.48503 * 109.47216 * 239.99985 * 17 15 13 21 21 C 1.40224 * 118.22462 * 0.25330 * 5 4 3 22 22 C 1.37747 * 119.15657 * 359.49995 * 21 5 4 23 23 N 1.32039 * 121.00977 * 0.51308 * 22 21 5 24 24 H 1.08996 * 109.47592 * 59.99258 * 1 2 3 25 25 H 1.09005 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46745 * 299.99466 * 1 2 3 27 27 H 0.96998 * 119.99565 * 180.02562 * 2 1 3 28 28 H 1.07998 * 120.53816 * 359.95228 * 4 3 2 29 29 H 1.07994 * 120.02350 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.67810 * 180.02562 * 10 8 7 31 31 H 1.07997 * 119.99294 * 180.02562 * 11 10 8 32 32 H 0.97008 * 120.00091 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.41655 * 179.72288 * 21 5 4 34 34 H 1.08000 * 119.49040 * 180.25229 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2042 0.0000 4 6 1.4582 2.4026 0.0005 5 6 2.1718 3.6035 0.0011 6 6 1.4684 4.9050 0.0011 7 6 0.4568 5.1558 -0.9187 8 6 -0.1963 6.3766 -0.9123 9 9 -1.1784 6.6150 -1.8089 10 6 0.1503 7.3609 0.0085 11 6 1.1387 7.1410 0.9222 12 6 1.8203 5.9092 0.9395 13 6 2.8383 5.6738 1.8838 14 1 3.0539 4.6657 2.2054 15 6 3.5712 6.7474 2.4059 16 7 3.5325 7.9139 1.8161 17 14 4.6038 6.5128 3.9448 18 1 4.4789 5.1099 4.4156 19 1 6.0264 6.8059 3.6358 20 1 4.1274 7.4359 5.0061 21 6 3.5727 3.5425 -0.0044 22 6 4.1908 2.3115 0.0004 23 7 3.4847 1.1957 -0.0001 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9499 -0.8401 -0.0004 28 1 0.3782 2.4059 0.0002 29 1 0.1810 4.3992 -1.6382 30 1 -0.3692 8.3077 0.0003 31 1 1.3988 7.9120 1.6322 32 1 4.0397 8.6574 2.1778 33 1 4.1595 4.4491 -0.0087 34 1 5.2695 2.2582 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244972493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = -8.250724 kcal Electronic energy + Delta-G solvation = -19989.218043 eV Core-core repulsion = 16800.123237 eV Total energy + Delta-G solvation = -3189.094806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.33847 -41.05534 -39.26464 -36.54776 -35.58464 -34.10234 -31.50363 -30.67520 -30.51898 -27.11298 -26.98224 -24.73568 -23.27828 -22.76628 -21.74855 -19.37058 -18.66143 -17.84784 -17.24340 -16.88659 -16.49589 -16.32555 -16.09763 -15.84087 -15.50019 -15.24159 -15.05807 -14.56032 -14.19788 -13.89276 -13.75786 -13.72710 -13.20823 -12.89557 -12.84187 -12.64559 -12.48458 -12.23095 -11.81508 -11.50024 -11.08721 -11.00990 -10.50676 -10.30680 -9.43814 -9.23475 -8.72984 -8.52494 -6.37028 0.21606 0.60146 0.77222 1.13341 1.40784 1.46204 1.54240 2.18379 2.38316 2.59291 3.12203 3.54855 3.75246 3.92682 4.11427 4.23923 4.32805 4.40127 4.49661 4.58589 4.67742 4.69101 4.93628 4.96192 5.00446 5.03499 5.16517 5.23073 5.49063 5.62219 5.71336 5.82590 5.88489 6.02008 6.19747 6.24486 6.53241 6.74313 6.79797 6.86206 7.36823 8.22239 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.008089 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.182701 B = 3460.558469 C = 5251.662505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.730 5.730 3 C 0.387 3.613 4 C -0.250 4.250 5 C 0.075 3.925 6 C -0.178 4.178 7 C -0.092 4.092 8 C -0.059 4.059 9 F -0.169 7.169 10 C -0.123 4.123 11 C -0.154 4.154 12 C 0.101 3.899 13 C -0.454 4.454 14 H 0.080 0.920 15 C 0.043 3.957 16 N -0.808 5.808 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.263 1.263 20 H -0.263 1.263 21 C -0.217 4.217 22 C 0.136 3.864 23 N -0.570 5.570 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.409 0.591 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.294 0.706 33 H 0.122 0.878 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -8.861 0.170 8.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.364 5.364 3 C 0.152 3.848 4 C -0.275 4.275 5 C 0.068 3.932 6 C -0.180 4.180 7 C -0.111 4.111 8 C -0.079 4.079 9 F -0.148 7.148 10 C -0.143 4.143 11 C -0.173 4.173 12 C 0.098 3.902 13 C -0.481 4.481 14 H 0.098 0.902 15 C -0.175 4.175 16 N -0.432 5.432 17 Si 0.795 3.205 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.188 1.188 21 C -0.240 4.240 22 C -0.019 4.019 23 N -0.289 5.289 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.067 0.933 27 H 0.244 0.756 28 H 0.148 0.852 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.140 0.860 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.868 -9.376 0.140 9.418 hybrid contribution -0.092 1.038 0.316 1.089 sum -0.961 -8.338 0.456 8.406 Atomic orbital electron populations 1.21720 0.77725 1.04372 1.01119 1.44224 1.06454 1.04217 1.81542 1.18408 0.88378 0.86937 0.91111 1.21533 1.00643 0.91027 1.14300 1.18863 0.93107 0.91635 0.89637 1.18536 1.02655 0.95902 1.00894 1.20698 0.95890 0.95244 0.99278 1.17289 0.96235 0.97371 0.97017 1.91292 1.61068 1.95248 1.67238 1.20683 0.99224 0.98089 0.96254 1.20924 0.96412 0.99262 1.00703 1.17877 0.91305 0.90553 0.90434 1.19723 1.14048 0.94941 1.19436 0.90190 1.26697 0.97307 0.93764 0.99687 1.69794 1.33849 1.02967 1.36636 0.85256 0.78081 0.79759 0.77432 1.18545 1.18721 1.18764 1.22007 0.94477 0.99332 1.08183 1.22550 1.00330 0.86186 0.92838 1.67112 1.06237 1.32465 1.23128 0.93020 0.87280 0.93299 0.75554 0.85164 0.86283 0.86177 0.86249 0.89458 0.85991 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.82 9.92 127.77 1.27 3.08 16 2 N -0.73 -18.60 5.89 -366.68 -2.16 -20.76 16 3 C 0.39 13.22 7.65 132.97 1.02 14.24 16 4 C -0.25 -9.38 8.87 22.78 0.20 -9.18 16 5 C 0.08 3.21 4.92 -19.87 -0.10 3.11 16 6 C -0.18 -8.33 5.56 -19.62 -0.11 -8.44 16 7 C -0.09 -4.12 9.52 22.51 0.21 -3.91 16 8 C -0.06 -2.72 7.31 22.55 0.16 -2.55 16 9 F -0.17 -7.37 17.26 44.97 0.78 -6.59 16 10 C -0.12 -5.67 9.94 22.06 0.22 -5.45 16 11 C -0.15 -7.58 8.62 22.46 0.19 -7.38 16 12 C 0.10 5.09 5.55 -21.12 -0.12 4.97 16 13 C -0.45 -22.21 7.19 23.36 0.17 -22.04 16 14 H 0.08 3.94 6.68 -2.91 -0.02 3.92 16 15 C 0.04 1.98 5.17 85.30 0.44 2.42 16 16 N -0.81 -38.32 10.99 21.85 0.24 -38.08 16 17 Si 0.97 35.38 29.59 68.60 2.03 37.41 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 21 C -0.22 -8.75 8.14 22.64 0.18 -8.56 16 22 C 0.14 4.74 11.16 84.55 0.94 5.68 16 23 N -0.57 -20.12 10.38 -193.56 -2.01 -22.13 16 24 H 0.05 1.02 7.92 -2.39 -0.02 1.00 16 25 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.05 1.00 7.92 -2.39 -0.02 0.99 16 27 H 0.41 8.91 8.95 -92.71 -0.83 8.08 16 28 H 0.13 4.55 6.70 -2.91 -0.02 4.53 16 29 H 0.12 4.82 8.05 -2.91 -0.02 4.79 16 30 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 31 H 0.12 5.99 6.26 -2.91 -0.02 5.97 16 32 H 0.29 12.53 8.30 -92.70 -0.77 11.76 16 33 H 0.12 5.19 7.41 -2.91 -0.02 5.17 16 34 H 0.18 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -56.67 297.37 3.88 -52.79 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.32 Total: 31.38 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.69 Total: -34.02 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -3.93 Total: -80.97 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.78 Total: -6.59 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -56.67 3.88 -52.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244972493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.535 kcal (2) G-P(sol) polarization free energy of solvation -56.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds