Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39042 * 120.00094 * 2 1 4 4 C 1.38915 * 119.64659 * 0.28553 * 3 2 1 5 5 C 1.39453 * 118.95138 * 180.26893 * 4 3 2 6 6 C 1.48357 * 120.86332 * 179.73410 * 5 4 3 7 7 C 1.39611 * 120.01673 * 309.71806 * 6 5 4 8 8 C 1.38450 * 120.42085 * 179.97438 * 7 6 5 9 9 C 1.37669 * 120.45888 * 359.97438 * 8 7 6 10 10 C 1.40733 * 120.02423 * 359.97438 * 9 8 7 11 11 C 1.41308 * 120.21264 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00226 * 154.30120 * 11 10 9 13 13 C 1.39933 * 119.99760 * 334.58216 * 11 10 9 14 14 N 1.30844 * 119.99983 * 343.01665 * 13 11 10 15 15 Si 1.86799 * 120.00019 * 163.02659 * 13 11 10 16 16 H 1.48499 * 109.47386 * 59.99769 * 15 13 11 17 17 H 1.48499 * 109.47070 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46994 * 299.99605 * 15 13 11 19 19 C 1.39074 * 120.02181 * 129.93831 * 6 5 4 20 20 F 1.35106 * 120.22340 * 0.03711 * 19 6 5 21 21 C 1.39983 * 118.27080 * 359.45970 * 5 4 3 22 22 C 1.37788 * 119.18852 * 0.27715 * 21 5 4 23 23 N 1.32025 * 120.98211 * 359.97438 * 22 21 5 24 24 H 1.09008 * 109.46747 * 299.99369 * 1 2 3 25 25 H 1.08992 * 109.47648 * 59.99395 * 1 2 3 26 26 H 1.08998 * 109.46864 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00497 * 180.02562 * 2 1 3 28 28 H 1.07999 * 120.52702 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.79237 * 0.02562 * 7 6 5 30 30 H 1.08006 * 119.77164 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.98934 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00147 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.40257 * 180.29398 * 21 5 4 34 34 H 1.07999 * 119.50778 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4582 2.4029 0.0060 5 6 2.1701 3.6020 0.0002 6 6 1.4635 4.9065 0.0004 7 6 0.4476 5.1506 -0.9256 8 6 -0.2176 6.3648 -0.9326 9 6 0.1133 7.3471 -0.0266 10 6 1.1336 7.1209 0.9159 11 6 1.4769 8.1266 1.8474 12 1 1.9225 7.8570 2.7936 13 6 1.2340 9.4714 1.5463 14 7 1.0084 9.8346 0.3097 15 14 1.2319 10.7482 2.9099 16 1 2.5593 10.7637 3.5756 17 1 0.9523 12.0877 2.3332 18 1 0.1831 10.4082 3.9047 19 6 1.8159 5.8886 0.9199 20 9 2.8018 5.6599 1.8150 21 6 3.5687 3.5428 0.0001 22 6 4.1892 2.3125 -0.0001 23 7 3.4846 1.1960 0.0003 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8400 -0.0004 28 1 0.3783 2.4061 0.0111 29 1 0.1783 4.3872 -1.6405 30 1 -1.0017 6.5426 -1.6539 31 1 -0.4104 8.2916 -0.0391 32 1 0.8397 10.7667 0.1010 33 1 4.1542 4.4504 0.0005 34 1 5.2679 2.2609 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244974336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = 6.499094 kcal Electronic energy + Delta-G solvation = -19790.321314 eV Core-core repulsion = 16601.866108 eV Total energy + Delta-G solvation = -3188.455206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.32116 -39.80374 -37.39462 -35.58664 -34.11245 -32.40766 -29.85400 -29.58390 -28.49345 -26.12635 -25.39803 -23.33279 -22.00076 -20.85865 -20.37408 -17.85260 -16.75947 -16.34661 -15.98581 -15.41451 -15.21651 -14.65501 -14.49039 -14.27491 -14.25332 -13.87478 -13.68412 -12.98691 -12.93075 -12.56350 -12.17356 -11.94903 -11.72148 -11.47319 -11.35287 -11.14167 -10.77070 -10.55218 -10.08960 -9.95661 -9.75341 -9.42147 -9.11017 -9.08444 -7.59842 -7.47711 -7.34271 -6.90484 -4.51258 1.55992 1.78826 2.59449 2.73734 3.00852 3.03984 3.10678 3.34054 3.84340 4.30308 4.46446 4.93380 5.13060 5.17006 5.35685 5.42902 5.53798 5.65004 5.68876 5.74730 5.86161 6.08527 6.18689 6.30600 6.46143 6.72170 6.81438 6.87065 7.02554 7.08865 7.25373 7.38982 7.48130 7.72241 7.79529 7.85975 7.96564 8.41214 8.48771 8.63406 8.71049 10.03368 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.004668 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.898695 B = 5997.438095 C = 6428.528211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.738 5.738 3 C 0.391 3.609 4 C -0.227 4.227 5 C 0.066 3.934 6 C -0.074 4.074 7 C -0.196 4.196 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.084 3.916 11 C -0.454 4.454 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.790 5.790 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.001 4.001 20 F -0.155 7.155 21 C -0.212 4.212 22 C 0.138 3.862 23 N -0.556 5.556 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.401 0.599 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.284 0.716 33 H 0.131 0.869 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -9.960 -1.325 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.372 5.372 3 C 0.157 3.843 4 C -0.252 4.252 5 C 0.058 3.942 6 C -0.075 4.075 7 C -0.215 4.215 8 C -0.131 4.131 9 C -0.158 4.158 10 C 0.081 3.919 11 C -0.483 4.483 12 H 0.101 0.899 13 C -0.142 4.142 14 N -0.415 5.415 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.022 4.022 20 F -0.134 7.134 21 C -0.234 4.234 22 C -0.017 4.017 23 N -0.275 5.275 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.235 0.765 28 H 0.147 0.853 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.268 -10.498 -1.438 10.672 hybrid contribution -0.090 1.136 0.620 1.297 sum -1.358 -9.363 -0.818 9.496 Atomic orbital electron populations 1.21530 0.79342 1.02210 1.01554 1.44094 1.05432 1.05055 1.82622 1.18203 0.88292 0.86073 0.91737 1.21408 1.00619 0.90784 1.12361 1.19046 0.92714 0.92513 0.89934 1.18244 0.99032 0.91270 0.98963 1.20218 1.00757 0.98241 1.02317 1.20660 0.99524 0.93802 0.99106 1.21267 0.97962 0.99150 0.97383 1.17555 0.90708 0.90095 0.93522 1.19477 1.35664 0.90333 1.02801 0.89882 1.25903 0.92186 0.99854 0.96230 1.69790 1.33373 1.19475 1.18824 0.86265 0.80162 0.78552 0.81267 1.18787 1.20157 1.18640 1.17833 0.93036 0.96841 0.94481 1.91291 1.60221 1.95017 1.66899 1.21993 0.94517 0.99272 1.07633 1.22166 0.99127 0.86788 0.93645 1.67011 1.06027 1.32447 1.21984 0.92712 0.92753 0.90777 0.76469 0.85268 0.88323 0.88381 0.85525 0.90461 0.85069 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 9.92 59.85 0.59 1.55 16 2 N -0.74 -9.35 5.89 -67.25 -0.40 -9.74 16 3 C 0.39 6.46 7.65 -155.03 -1.19 5.28 16 4 C -0.23 -4.04 8.86 -38.88 -0.34 -4.39 16 5 C 0.07 1.32 5.33 -104.63 -0.56 0.77 16 6 C -0.07 -1.67 5.51 -104.91 -0.58 -2.25 16 7 C -0.20 -4.17 9.55 -38.99 -0.37 -4.54 16 8 C -0.11 -2.46 10.01 -39.71 -0.40 -2.85 16 9 C -0.14 -3.39 8.68 -38.85 -0.34 -3.73 16 10 C 0.08 2.21 5.57 -106.80 -0.59 1.61 16 11 C -0.45 -11.91 8.77 -37.78 -0.33 -12.24 16 12 H 0.08 2.16 7.75 -52.48 -0.41 1.75 16 13 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 14 N -0.79 -19.55 10.96 55.55 0.61 -18.94 16 15 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 16 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 C 0.00 -0.04 7.19 -38.28 -0.28 -0.31 16 20 F -0.16 -3.89 15.40 2.25 0.03 -3.85 16 21 C -0.21 -3.96 8.97 -39.09 -0.35 -4.31 16 22 C 0.14 2.29 11.16 -17.63 -0.20 2.09 16 23 N -0.56 -9.52 10.38 -12.52 -0.13 -9.65 16 24 H 0.05 0.55 7.91 -51.92 -0.41 0.14 16 25 H 0.05 0.53 7.94 -51.93 -0.41 0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.40 4.43 8.95 -40.82 -0.37 4.06 16 28 H 0.13 2.12 6.70 -52.49 -0.35 1.77 16 29 H 0.10 1.87 8.05 -52.48 -0.42 1.44 16 30 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.13 3.16 6.19 -52.49 -0.32 2.84 16 32 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 33 H 0.13 2.46 7.84 -52.49 -0.41 2.05 16 34 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -28.37 299.72 -8.92 -37.29 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.51 Total: 8.74 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -5.02 Total: -21.54 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.08 Total: -38.33 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.37 -8.92 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244974336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.789 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds