Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39042 * 120.00094 * 2 1 4 4 C 1.38915 * 119.64659 * 0.28553 * 3 2 1 5 5 C 1.39453 * 118.95138 * 180.26893 * 4 3 2 6 6 C 1.48357 * 120.86332 * 179.73410 * 5 4 3 7 7 C 1.39611 * 120.01673 * 309.71806 * 6 5 4 8 8 C 1.38450 * 120.42085 * 179.97438 * 7 6 5 9 9 C 1.37669 * 120.45888 * 359.97438 * 8 7 6 10 10 C 1.40733 * 120.02423 * 359.97438 * 9 8 7 11 11 C 1.41308 * 120.21264 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00226 * 154.30120 * 11 10 9 13 13 C 1.39933 * 119.99760 * 334.58216 * 11 10 9 14 14 N 1.30844 * 119.99983 * 343.01665 * 13 11 10 15 15 Si 1.86799 * 120.00019 * 163.02659 * 13 11 10 16 16 H 1.48499 * 109.47386 * 59.99769 * 15 13 11 17 17 H 1.48499 * 109.47070 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46994 * 299.99605 * 15 13 11 19 19 C 1.39074 * 120.02181 * 129.93831 * 6 5 4 20 20 F 1.35106 * 120.22340 * 0.03711 * 19 6 5 21 21 C 1.39983 * 118.27080 * 359.45970 * 5 4 3 22 22 C 1.37788 * 119.18852 * 0.27715 * 21 5 4 23 23 N 1.32025 * 120.98211 * 359.97438 * 22 21 5 24 24 H 1.09008 * 109.46747 * 299.99369 * 1 2 3 25 25 H 1.08992 * 109.47648 * 59.99395 * 1 2 3 26 26 H 1.08998 * 109.46864 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00497 * 180.02562 * 2 1 3 28 28 H 1.07999 * 120.52702 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.79237 * 0.02562 * 7 6 5 30 30 H 1.08006 * 119.77164 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.98934 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00147 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.40257 * 180.29398 * 21 5 4 34 34 H 1.07999 * 119.50778 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4582 2.4029 0.0060 5 6 2.1701 3.6020 0.0002 6 6 1.4635 4.9065 0.0004 7 6 0.4476 5.1506 -0.9256 8 6 -0.2176 6.3648 -0.9326 9 6 0.1133 7.3471 -0.0266 10 6 1.1336 7.1209 0.9159 11 6 1.4769 8.1266 1.8474 12 1 1.9225 7.8570 2.7936 13 6 1.2340 9.4714 1.5463 14 7 1.0084 9.8346 0.3097 15 14 1.2319 10.7482 2.9099 16 1 2.5593 10.7637 3.5756 17 1 0.9523 12.0877 2.3332 18 1 0.1831 10.4082 3.9047 19 6 1.8159 5.8886 0.9199 20 9 2.8018 5.6599 1.8150 21 6 3.5687 3.5428 0.0001 22 6 4.1892 2.3125 -0.0001 23 7 3.4846 1.1960 0.0003 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.9500 -0.8400 -0.0004 28 1 0.3783 2.4061 0.0111 29 1 0.1783 4.3872 -1.6405 30 1 -1.0017 6.5426 -1.6539 31 1 -0.4104 8.2916 -0.0391 32 1 0.8397 10.7667 0.1010 33 1 4.1542 4.4504 0.0005 34 1 5.2679 2.2609 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244974336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = -8.618348 kcal Electronic energy + Delta-G solvation = -19790.976855 eV Core-core repulsion = 16601.866108 eV Total energy + Delta-G solvation = -3189.110747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.23924 -41.14236 -39.15560 -36.74141 -35.84774 -33.97080 -31.61371 -30.88353 -30.16810 -27.36761 -27.02113 -24.85227 -23.35644 -22.61222 -21.99529 -19.47779 -18.16374 -18.00536 -17.59940 -17.12947 -16.68127 -16.34246 -15.94631 -15.73247 -15.57610 -15.27852 -15.09400 -14.65592 -14.22191 -14.07877 -13.80065 -13.46978 -13.20290 -13.02275 -12.80950 -12.77757 -12.41618 -12.20562 -11.85486 -11.55000 -11.25212 -11.08764 -10.64458 -10.45444 -9.44365 -9.14551 -8.72292 -8.64994 -6.45387 0.05841 0.43150 0.79212 1.02350 1.37107 1.47495 1.50696 2.18215 2.28824 2.60587 2.97976 3.47430 3.58617 3.85922 3.94049 4.19180 4.27246 4.39755 4.46702 4.53763 4.66856 4.67896 4.80315 4.89674 4.93240 4.96555 5.10332 5.22355 5.47659 5.52218 5.63414 5.71002 5.97095 5.97716 6.08130 6.14721 6.51295 6.64539 6.74476 6.82864 7.22922 8.24082 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.004668 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.898695 B = 5997.438095 C = 6428.528211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.726 5.726 3 C 0.391 3.609 4 C -0.231 4.231 5 C 0.040 3.960 6 C -0.070 4.070 7 C -0.188 4.188 8 C -0.106 4.106 9 C -0.158 4.158 10 C 0.057 3.943 11 C -0.495 4.495 12 H 0.069 0.931 13 C 0.042 3.958 14 N -0.816 5.816 15 Si 0.983 3.017 16 H -0.264 1.264 17 H -0.260 1.260 18 H -0.259 1.259 19 C -0.035 4.035 20 F -0.164 7.164 21 C -0.232 4.232 22 C 0.149 3.851 23 N -0.563 5.563 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.411 0.589 28 H 0.141 0.859 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.294 0.706 33 H 0.120 0.880 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -11.524 -1.917 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.360 5.360 3 C 0.155 3.845 4 C -0.256 4.256 5 C 0.032 3.968 6 C -0.071 4.071 7 C -0.208 4.208 8 C -0.125 4.125 9 C -0.178 4.178 10 C 0.054 3.946 11 C -0.524 4.524 12 H 0.087 0.913 13 C -0.174 4.174 14 N -0.441 5.441 15 Si 0.804 3.196 16 H -0.189 1.189 17 H -0.183 1.183 18 H -0.183 1.183 19 C -0.055 4.055 20 F -0.143 7.143 21 C -0.255 4.255 22 C -0.007 4.007 23 N -0.282 5.282 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.247 0.753 28 H 0.159 0.841 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.994 -12.109 -2.047 12.441 hybrid contribution 0.106 1.408 0.715 1.583 sum -1.888 -10.700 -1.332 10.947 Atomic orbital electron populations 1.21790 0.77387 1.04650 1.01442 1.44284 1.06679 1.04153 1.80853 1.18452 0.88330 0.87084 0.90649 1.21458 1.01161 0.90442 1.12512 1.19065 0.93443 0.92143 0.92112 1.18557 0.98846 0.91885 0.97809 1.20615 0.99610 0.98612 1.01929 1.21013 0.99769 0.93128 0.98546 1.21276 0.98292 0.99738 0.98456 1.17914 0.91546 0.90824 0.94349 1.19626 1.38013 0.91917 1.02852 0.91287 1.26675 0.91183 1.01030 0.98556 1.69810 1.33484 1.20503 1.20283 0.85231 0.79949 0.76352 0.78115 1.18884 1.18345 1.18308 1.18130 0.93847 0.97819 0.95747 1.91245 1.60641 1.95089 1.67366 1.21995 0.94176 0.99926 1.09426 1.22621 1.00654 0.85747 0.91663 1.67173 1.06344 1.32332 1.22336 0.93092 0.92493 0.87199 0.75318 0.84129 0.85203 0.85017 0.86501 0.89514 0.86235 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 9.92 127.77 1.27 2.73 16 2 N -0.73 -16.19 5.89 -366.67 -2.16 -18.35 16 3 C 0.39 12.05 7.65 132.98 1.02 13.07 16 4 C -0.23 -7.87 8.86 22.73 0.20 -7.67 16 5 C 0.04 1.61 5.33 -19.87 -0.11 1.50 16 6 C -0.07 -3.18 5.51 -20.05 -0.11 -3.29 16 7 C -0.19 -7.81 9.55 22.65 0.22 -7.59 16 8 C -0.11 -4.56 10.01 22.19 0.22 -4.34 16 9 C -0.16 -7.95 8.68 22.75 0.20 -7.75 16 10 C 0.06 3.09 5.57 -21.27 -0.12 2.97 16 11 C -0.50 -27.28 8.77 23.44 0.21 -27.07 16 12 H 0.07 3.83 7.75 -2.91 -0.02 3.80 16 13 C 0.04 2.08 5.15 85.25 0.44 2.52 16 14 N -0.82 -41.22 10.96 21.83 0.24 -40.98 16 15 Si 0.98 37.86 29.59 68.60 2.03 39.89 16 16 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 17 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 C -0.04 -1.83 7.19 23.11 0.17 -1.67 16 20 F -0.16 -8.67 15.40 44.97 0.69 -7.98 16 21 C -0.23 -8.71 8.97 22.59 0.20 -8.51 16 22 C 0.15 4.71 11.16 84.56 0.94 5.66 16 23 N -0.56 -18.06 10.38 -193.52 -2.01 -20.07 16 24 H 0.05 0.89 7.91 -2.38 -0.02 0.87 16 25 H 0.06 0.92 7.94 -2.39 -0.02 0.90 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.41 7.71 8.95 -92.71 -0.83 6.88 16 28 H 0.14 4.34 6.70 -2.91 -0.02 4.32 16 29 H 0.13 4.54 8.05 -2.91 -0.02 4.52 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.12 6.02 6.19 -2.91 -0.02 6.00 16 32 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 33 H 0.12 4.65 7.84 -2.91 -0.02 4.63 16 34 H 0.18 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.27 299.72 3.85 -59.42 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.31 Total: 27.50 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 4.74 Total: -39.44 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.93 Total: -79.40 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.69 Total: -7.98 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -63.27 3.85 -59.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244974336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.799 kcal (2) G-P(sol) polarization free energy of solvation -63.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds