Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39033 * 120.00084 * 2 1 4 4 C 1.38917 * 119.64538 * 359.97438 * 3 2 1 5 5 C 1.39449 * 118.94950 * 180.02562 * 4 3 2 6 6 C 1.48359 * 120.86415 * 179.97438 * 5 4 3 7 7 C 1.38698 * 120.01864 * 129.97813 * 6 5 4 8 8 C 1.40545 * 119.65594 * 180.02562 * 7 6 5 9 9 C 1.41342 * 120.15706 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00153 * 154.69638 * 9 8 7 11 11 C 1.39899 * 119.99776 * 334.69975 * 9 8 7 12 12 N 1.30864 * 120.00424 * 342.87473 * 11 9 8 13 13 Si 1.86803 * 119.99782 * 162.87651 * 11 9 8 14 14 H 1.48504 * 109.47305 * 60.00044 * 13 11 9 15 15 H 1.48502 * 109.46876 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47069 * 299.99745 * 13 11 9 17 17 C 1.40846 * 119.69058 * 0.02562 * 8 7 6 18 18 C 1.37555 * 120.02625 * 359.97438 * 17 8 7 19 19 C 1.38765 * 120.34769 * 359.97438 * 18 17 8 20 20 F 1.35106 * 119.83880 * 180.27869 * 19 18 17 21 21 C 1.39982 * 118.27184 * 0.25588 * 5 4 3 22 22 C 1.37786 * 119.19223 * 359.47624 * 21 5 4 23 23 N 1.32036 * 120.97601 * 0.53777 * 22 21 5 24 24 H 1.08998 * 109.47307 * 60.00392 * 1 2 3 25 25 H 1.09003 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46950 * 300.00011 * 1 2 3 27 27 H 0.97001 * 119.99675 * 179.97438 * 2 1 3 28 28 H 1.07991 * 120.52920 * 359.97438 * 4 3 2 29 29 H 1.07992 * 120.17248 * 0.02562 * 7 6 5 30 30 H 0.96993 * 120.00081 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.98824 * 180.02562 * 17 8 7 32 32 H 1.08003 * 119.82331 * 179.97438 * 18 17 8 33 33 H 1.08009 * 120.40650 * 179.74617 * 21 5 4 34 34 H 1.08001 * 119.51776 * 180.25491 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4582 2.4028 -0.0005 5 6 2.1701 3.6019 -0.0011 6 6 1.4636 4.9064 -0.0022 7 6 1.8112 5.8847 0.9175 8 6 1.1365 7.1176 0.9099 9 6 1.4819 8.1217 1.8428 10 1 1.2938 9.1601 1.6129 11 6 2.0674 7.7705 3.0638 12 7 1.9947 6.5366 3.4936 13 14 2.9531 9.0631 4.0809 14 1 2.0042 10.1485 4.4371 15 1 3.4807 8.4406 5.3217 16 1 4.0780 9.6277 3.2929 17 6 0.1139 7.3474 -0.0309 18 6 -0.2204 6.3682 -0.9372 19 6 0.4456 5.1508 -0.9316 20 9 0.1127 4.1983 -1.8301 21 6 3.5686 3.5427 -0.0066 22 6 4.1892 2.3125 -0.0002 23 7 3.4846 1.1959 0.0003 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 0.3783 2.4061 -0.0014 29 1 2.5963 5.7000 1.6357 30 1 2.4004 6.2933 4.3403 31 1 -0.4074 8.2932 -0.0412 32 1 -1.0054 6.5478 -1.6569 33 1 4.1542 4.4502 -0.0113 34 1 5.2680 2.2607 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244975517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = 5.474233 kcal Electronic energy + Delta-G solvation = -19940.750950 eV Core-core repulsion = 16752.251303 eV Total energy + Delta-G solvation = -3188.499647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.55917 -39.71677 -37.46934 -35.48469 -33.84060 -32.65144 -29.66983 -29.41671 -28.83532 -26.01732 -25.15648 -23.24069 -22.13894 -20.98178 -20.22648 -17.82283 -16.76894 -16.39662 -16.01919 -15.37678 -15.16055 -14.71955 -14.46811 -14.31794 -14.20196 -13.86434 -13.58802 -12.95526 -12.89768 -12.32250 -12.08204 -12.03997 -11.95838 -11.43825 -11.27468 -11.19315 -11.00078 -10.40941 -10.15019 -9.89026 -9.75905 -9.36184 -9.07638 -9.00044 -7.61831 -7.43188 -7.36339 -6.91763 -4.50859 1.64757 1.86335 2.58360 2.75957 3.00146 3.01227 3.07371 3.43292 3.82191 4.32637 4.47575 5.01753 5.21949 5.23883 5.39259 5.54240 5.61371 5.67819 5.76381 5.82123 5.87176 6.01746 6.20164 6.35918 6.60260 6.78764 6.82962 6.92086 7.03527 7.07901 7.27487 7.35700 7.54991 7.66486 7.81670 7.82879 8.02232 8.37248 8.56885 8.67476 8.70490 10.02474 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005790 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.472647 B = 4834.546394 C = 5654.881075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.737 5.737 3 C 0.392 3.608 4 C -0.219 4.219 5 C 0.069 3.931 6 C -0.077 4.077 7 C -0.114 4.114 8 C 0.100 3.900 9 C -0.456 4.456 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.789 5.789 13 Si 0.911 3.089 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.262 1.262 17 C -0.198 4.198 18 C -0.118 4.118 19 C -0.028 4.028 20 F -0.168 7.168 21 C -0.217 4.217 22 C 0.137 3.863 23 N -0.557 5.557 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.401 0.599 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.285 0.715 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 -6.611 -2.689 7.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.371 5.371 3 C 0.158 3.842 4 C -0.243 4.243 5 C 0.061 3.939 6 C -0.078 4.078 7 C -0.134 4.134 8 C 0.097 3.903 9 C -0.485 4.485 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.413 5.413 13 Si 0.735 3.265 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.186 1.186 17 C -0.218 4.218 18 C -0.137 4.137 19 C -0.048 4.048 20 F -0.147 7.147 21 C -0.239 4.239 22 C -0.019 4.019 23 N -0.275 5.275 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.235 0.765 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.586 -7.554 -2.501 7.979 hybrid contribution -0.054 0.870 0.442 0.977 sum 0.532 -6.684 -2.059 7.014 Atomic orbital electron populations 1.21535 0.79341 1.02108 1.01672 1.44074 1.05436 1.05012 1.82606 1.18184 0.88237 0.86077 0.91683 1.21416 1.00707 0.90880 1.11330 1.19003 0.92732 0.92442 0.89769 1.18457 0.97504 0.93282 0.98587 1.21345 1.01053 0.92908 0.98086 1.17581 0.89120 0.92383 0.91179 1.19546 1.34781 0.94785 0.99339 0.89958 1.25950 0.94128 0.96240 0.98091 1.69792 1.33104 1.18999 1.19414 0.86309 0.80407 0.81026 0.78742 1.18881 1.20214 1.18631 1.20919 1.01050 0.98918 1.00939 1.20461 1.00070 0.92913 1.00297 1.17207 1.03654 0.88364 0.95534 1.91295 1.92467 1.64028 1.66894 1.21932 0.94322 0.99178 1.08492 1.22139 0.99039 0.86862 0.93881 1.66999 1.06026 1.32436 1.22079 0.92670 0.90815 0.92726 0.76522 0.85417 0.85074 0.90412 0.87776 0.87819 0.85111 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 9.92 59.85 0.59 1.72 16 2 N -0.74 -10.38 5.89 -67.25 -0.40 -10.78 16 3 C 0.39 7.03 7.65 -155.04 -1.19 5.85 16 4 C -0.22 -4.31 8.19 -38.88 -0.32 -4.63 16 5 C 0.07 1.45 5.32 -104.63 -0.56 0.90 16 6 C -0.08 -1.80 5.51 -104.90 -0.58 -2.38 16 7 C -0.11 -2.83 8.17 -38.54 -0.32 -3.14 16 8 C 0.10 2.51 5.57 -106.86 -0.59 1.91 16 9 C -0.46 -11.27 9.04 -37.78 -0.34 -11.61 16 10 H 0.08 1.93 7.90 -52.48 -0.41 1.52 16 11 C 0.07 1.76 5.14 -17.34 -0.09 1.68 16 12 N -0.79 -19.38 10.96 55.54 0.61 -18.77 16 13 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 14 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 15 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 16 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 17 C -0.20 -4.58 9.78 -38.84 -0.38 -4.96 16 18 C -0.12 -2.61 9.99 -39.64 -0.40 -3.01 16 19 C -0.03 -0.63 7.20 -38.73 -0.28 -0.91 16 20 F -0.17 -3.73 15.95 2.25 0.04 -3.69 16 21 C -0.22 -4.11 9.64 -39.09 -0.38 -4.49 16 22 C 0.14 2.33 11.16 -17.63 -0.20 2.13 16 23 N -0.56 -10.05 10.38 -12.52 -0.13 -10.18 16 24 H 0.05 0.66 7.92 -51.93 -0.41 0.24 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.40 4.88 8.95 -40.82 -0.37 4.51 16 28 H 0.13 2.47 6.51 -52.49 -0.34 2.13 16 29 H 0.13 3.34 6.18 -52.49 -0.32 3.01 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 33 H 0.13 2.34 8.06 -52.48 -0.42 1.91 16 34 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 300.45 15.07 4.53 4.53 Total: -1.00 -27.71 300.45 -8.92 -36.62 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -3.52 Total: 10.61 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -5.01 Total: -20.95 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.08 Total: -39.73 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.71 -8.92 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244975517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.096 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds