Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39033 * 120.00084 * 2 1 4 4 C 1.38917 * 119.64538 * 359.97438 * 3 2 1 5 5 C 1.39449 * 118.94950 * 180.02562 * 4 3 2 6 6 C 1.48359 * 120.86415 * 179.97438 * 5 4 3 7 7 C 1.38698 * 120.01864 * 129.97813 * 6 5 4 8 8 C 1.40545 * 119.65594 * 180.02562 * 7 6 5 9 9 C 1.41342 * 120.15706 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00153 * 154.69638 * 9 8 7 11 11 C 1.39899 * 119.99776 * 334.69975 * 9 8 7 12 12 N 1.30864 * 120.00424 * 342.87473 * 11 9 8 13 13 Si 1.86803 * 119.99782 * 162.87651 * 11 9 8 14 14 H 1.48504 * 109.47305 * 60.00044 * 13 11 9 15 15 H 1.48502 * 109.46876 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47069 * 299.99745 * 13 11 9 17 17 C 1.40846 * 119.69058 * 0.02562 * 8 7 6 18 18 C 1.37555 * 120.02625 * 359.97438 * 17 8 7 19 19 C 1.38765 * 120.34769 * 359.97438 * 18 17 8 20 20 F 1.35106 * 119.83880 * 180.27869 * 19 18 17 21 21 C 1.39982 * 118.27184 * 0.25588 * 5 4 3 22 22 C 1.37786 * 119.19223 * 359.47624 * 21 5 4 23 23 N 1.32036 * 120.97601 * 0.53777 * 22 21 5 24 24 H 1.08998 * 109.47307 * 60.00392 * 1 2 3 25 25 H 1.09003 * 109.46831 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46950 * 300.00011 * 1 2 3 27 27 H 0.97001 * 119.99675 * 179.97438 * 2 1 3 28 28 H 1.07991 * 120.52920 * 359.97438 * 4 3 2 29 29 H 1.07992 * 120.17248 * 0.02562 * 7 6 5 30 30 H 0.96993 * 120.00081 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.98824 * 180.02562 * 17 8 7 32 32 H 1.08003 * 119.82331 * 179.97438 * 18 17 8 33 33 H 1.08009 * 120.40650 * 179.74617 * 21 5 4 34 34 H 1.08001 * 119.51776 * 180.25491 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2041 0.0000 4 6 1.4582 2.4028 -0.0005 5 6 2.1701 3.6019 -0.0011 6 6 1.4636 4.9064 -0.0022 7 6 1.8112 5.8847 0.9175 8 6 1.1365 7.1176 0.9099 9 6 1.4819 8.1217 1.8428 10 1 1.2938 9.1601 1.6129 11 6 2.0674 7.7705 3.0638 12 7 1.9947 6.5366 3.4936 13 14 2.9531 9.0631 4.0809 14 1 2.0042 10.1485 4.4371 15 1 3.4807 8.4406 5.3217 16 1 4.0780 9.6277 3.2929 17 6 0.1139 7.3474 -0.0309 18 6 -0.2204 6.3682 -0.9372 19 6 0.4456 5.1508 -0.9316 20 9 0.1127 4.1983 -1.8301 21 6 3.5686 3.5427 -0.0066 22 6 4.1892 2.3125 -0.0002 23 7 3.4846 1.1959 0.0003 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 0.3783 2.4061 -0.0014 29 1 2.5963 5.7000 1.6357 30 1 2.4004 6.2933 4.3403 31 1 -0.4074 8.2932 -0.0412 32 1 -1.0054 6.5478 -1.6569 33 1 4.1542 4.4502 -0.0113 34 1 5.2680 2.2607 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244975517.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -8.664142 kcal Electronic energy + Delta-G solvation = -19941.364036 eV Core-core repulsion = 16752.251303 eV Total energy + Delta-G solvation = -3189.112733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.35156 -41.14049 -39.22705 -36.72929 -35.59962 -34.24231 -31.34489 -30.89121 -30.51617 -27.20062 -26.93691 -24.81224 -23.63151 -22.67421 -21.85288 -19.47955 -18.33233 -17.95622 -17.66132 -17.04732 -16.59718 -16.42397 -16.12852 -15.63801 -15.59095 -15.28918 -15.03171 -14.66822 -14.13631 -14.00420 -13.80257 -13.71149 -13.15951 -12.99236 -12.83253 -12.78150 -12.60721 -12.14276 -11.82312 -11.52921 -11.24028 -11.04327 -10.66587 -10.45979 -9.41205 -9.23659 -8.69868 -8.66244 -6.38790 0.06416 0.43130 0.81089 1.01547 1.41401 1.50305 1.54225 2.20090 2.26598 2.59256 2.98511 3.54029 3.60114 3.81553 3.91166 4.16807 4.23659 4.32218 4.39335 4.51884 4.59783 4.69155 4.83925 4.87566 4.95934 4.97856 5.09267 5.23006 5.46034 5.49108 5.59840 5.75276 5.83585 5.97964 6.07610 6.20544 6.53146 6.63893 6.83699 6.86182 7.21719 8.26750 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005790 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.472647 B = 4834.546394 C = 5654.881075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.726 5.726 3 C 0.391 3.609 4 C -0.234 4.234 5 C 0.040 3.960 6 C -0.077 4.077 7 C -0.135 4.135 8 C 0.075 3.925 9 C -0.485 4.485 10 H 0.087 0.913 11 C 0.037 3.963 12 N -0.820 5.820 13 Si 0.983 3.017 14 H -0.257 1.257 15 H -0.271 1.271 16 H -0.258 1.258 17 C -0.208 4.208 18 C -0.115 4.115 19 C -0.042 4.042 20 F -0.164 7.164 21 C -0.232 4.232 22 C 0.148 3.852 23 N -0.562 5.562 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.047 0.953 27 H 0.412 0.588 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.291 0.709 31 H 0.121 0.879 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 -7.277 -2.631 7.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.360 5.360 3 C 0.155 3.845 4 C -0.259 4.259 5 C 0.032 3.968 6 C -0.078 4.078 7 C -0.155 4.155 8 C 0.072 3.928 9 C -0.513 4.513 10 H 0.105 0.895 11 C -0.179 4.179 12 N -0.445 5.445 13 Si 0.803 3.197 14 H -0.182 1.182 15 H -0.195 1.195 16 H -0.182 1.182 17 C -0.227 4.227 18 C -0.133 4.133 19 C -0.062 4.062 20 F -0.143 7.143 21 C -0.255 4.255 22 C -0.008 4.008 23 N -0.281 5.281 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.066 0.934 27 H 0.248 0.752 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.966 -8.259 -2.460 8.672 hybrid contribution -0.232 0.951 0.369 1.046 sum 0.734 -7.308 -2.091 7.637 Atomic orbital electron populations 1.21743 0.77700 1.04602 1.01008 1.44228 1.06511 1.04230 1.80992 1.18395 0.88453 0.86856 0.90759 1.21392 1.00573 0.91283 1.12666 1.19129 0.93933 0.92024 0.91677 1.18687 0.97330 0.94002 0.97824 1.21226 1.01637 0.93737 0.98851 1.17957 0.89875 0.92860 0.92080 1.19846 1.36243 0.95021 1.00197 0.89458 1.26788 0.94096 0.98206 0.98811 1.69861 1.33687 1.20858 1.20061 0.85226 0.79101 0.78249 0.77084 1.18156 1.19538 1.18232 1.21143 1.00865 0.99930 1.00781 1.20753 1.00207 0.92111 1.00273 1.17417 1.04047 0.88925 0.95801 1.91292 1.92424 1.63951 1.66678 1.22046 0.93556 1.00347 1.09533 1.22728 1.00780 0.85775 0.91511 1.67178 1.05945 1.32583 1.22407 0.93255 0.86770 0.93446 0.75174 0.85869 0.86555 0.89874 0.86116 0.84883 0.84870 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.96 9.92 127.77 1.27 3.23 16 2 N -0.73 -19.09 5.89 -366.67 -2.16 -21.25 16 3 C 0.39 13.62 7.65 132.99 1.02 14.64 16 4 C -0.23 -9.29 8.19 22.72 0.19 -9.10 16 5 C 0.04 1.74 5.32 -19.87 -0.11 1.64 16 6 C -0.08 -3.71 5.51 -20.05 -0.11 -3.82 16 7 C -0.13 -6.91 8.17 22.94 0.19 -6.72 16 8 C 0.07 3.85 5.57 -21.31 -0.12 3.73 16 9 C -0.48 -24.40 9.04 23.44 0.21 -24.19 16 10 H 0.09 4.15 7.90 -2.91 -0.02 4.12 16 11 C 0.04 1.76 5.14 85.24 0.44 2.20 16 12 N -0.82 -41.14 10.96 21.82 0.24 -40.91 16 13 Si 0.98 35.97 29.59 68.60 2.03 38.00 16 14 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 15 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 16 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 17 C -0.21 -9.64 9.78 22.75 0.22 -9.42 16 18 C -0.11 -5.03 9.99 22.23 0.22 -4.81 16 19 C -0.04 -1.95 7.20 22.82 0.16 -1.79 16 20 F -0.16 -7.30 15.95 44.97 0.72 -6.58 16 21 C -0.23 -8.84 9.64 22.59 0.22 -8.62 16 22 C 0.15 4.83 11.16 84.55 0.94 5.78 16 23 N -0.56 -19.36 10.38 -193.53 -2.01 -21.37 16 24 H 0.05 1.11 7.92 -2.39 -0.02 1.09 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.08 7.93 -2.39 -0.02 1.06 16 27 H 0.41 9.01 8.95 -92.71 -0.83 8.18 16 28 H 0.12 4.86 6.51 -2.92 -0.02 4.84 16 29 H 0.12 6.21 6.18 -2.91 -0.02 6.19 16 30 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 31 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 32 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 34 H 0.19 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -60.20 300.45 3.87 -56.32 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.31 Total: 33.03 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 4.74 Total: -37.25 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.93 Total: -83.52 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.72 Total: -6.58 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -60.20 3.87 -56.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244975517.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.658 kcal (2) G-P(sol) polarization free energy of solvation -60.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds