Wall clock time and date at job start Mon Mar 30 2020 01:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.39038 * 120.00056 * 2 1 4 4 C 1.38876 * 119.63981 * 359.97438 * 3 2 1 5 5 C 1.39729 * 118.92234 * 179.97438 * 4 3 2 6 6 C 1.47903 * 120.89136 * 179.97438 * 5 4 3 7 7 C 1.39089 * 120.24187 * 310.02103 * 6 5 4 8 8 C 1.38075 * 120.13540 * 179.97438 * 7 6 5 9 9 C 1.39146 * 120.64177 * 0.02562 * 8 7 6 10 10 F 1.35102 * 119.75261 * 179.97438 * 9 8 7 11 11 C 1.37693 * 120.49142 * 359.73700 * 9 8 7 12 12 C 1.40706 * 119.83964 * 0.51737 * 11 9 8 13 13 C 1.40903 * 120.31104 * 179.76293 * 12 11 9 14 14 H 1.07997 * 120.00154 * 149.04793 * 13 12 11 15 15 C 1.40103 * 120.00034 * 329.33066 * 13 12 11 16 16 N 1.30747 * 120.00039 * 162.42539 * 15 13 12 17 17 Si 1.86800 * 120.00183 * 342.41924 * 15 13 12 18 18 H 1.48500 * 109.46852 * 95.35714 * 17 15 13 19 19 H 1.48496 * 109.47558 * 215.36397 * 17 15 13 20 20 H 1.48503 * 109.47090 * 335.36089 * 17 15 13 21 21 C 1.40243 * 118.21320 * 0.25709 * 5 4 3 22 22 C 1.37732 * 119.15968 * 359.47398 * 21 5 4 23 23 N 1.32046 * 121.00880 * 0.53498 * 22 21 5 24 24 H 1.08996 * 109.46724 * 59.99811 * 1 2 3 25 25 H 1.08995 * 109.47038 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46948 * 299.99999 * 1 2 3 27 27 H 0.96996 * 119.99761 * 179.97438 * 2 1 3 28 28 H 1.08003 * 120.53633 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.93404 * 0.02562 * 7 6 5 30 30 H 1.08004 * 119.67882 * 180.02562 * 8 7 6 31 31 H 1.07999 * 120.07963 * 180.28360 * 11 9 8 32 32 H 0.97004 * 119.99704 * 179.97438 * 16 15 13 33 33 H 1.08007 * 120.41635 * 179.73057 * 21 5 4 34 34 H 1.08006 * 119.49385 * 180.25603 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1603 1.2041 0.0000 4 6 1.4584 2.4024 -0.0005 5 6 2.1721 3.6037 0.0000 6 6 1.4689 4.9048 -0.0011 7 6 0.4571 5.1534 -0.9225 8 6 -0.1984 6.3687 -0.9212 9 6 0.1424 7.3573 -0.0033 10 9 -0.5103 8.5401 -0.0184 11 6 1.1367 7.1373 0.9236 12 6 1.8217 5.9083 0.9372 13 6 2.8441 5.6744 1.8780 14 1 3.0240 4.6739 2.2426 15 6 3.6236 6.7408 2.3451 16 7 4.3226 6.6083 3.4421 17 14 3.6645 8.3518 1.4005 18 1 2.6754 9.2931 1.9843 19 1 5.0235 8.9436 1.4896 20 1 3.3270 8.0994 -0.0235 21 6 3.5732 3.5424 -0.0044 22 6 4.1911 2.3115 0.0019 23 7 3.4849 1.1957 0.0014 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 0.0004 28 1 0.3783 2.4057 -0.0005 29 1 0.1830 4.3941 -1.6399 30 1 -0.9832 6.5538 -1.6398 31 1 1.3927 7.9076 1.6360 32 1 4.8626 7.3465 3.7652 33 1 4.1602 4.4490 -0.0086 34 1 5.2699 2.2580 0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244975675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:15 Heat of formation + Delta-G solvation = -8.648901 kcal Electronic energy + Delta-G solvation = -20050.761032 eV Core-core repulsion = 16861.648959 eV Total energy + Delta-G solvation = -3189.112072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.74995 -41.07837 -39.38609 -36.53135 -35.64930 -33.99849 -32.53546 -30.72031 -30.13057 -27.37692 -26.97728 -24.62093 -23.44567 -22.92598 -21.70788 -19.65961 -18.59581 -18.08854 -17.59449 -16.77656 -16.60532 -16.38204 -16.35721 -16.01624 -15.50504 -15.26411 -15.07761 -14.85967 -14.54279 -14.10857 -13.89871 -13.72052 -13.35136 -12.89332 -12.82441 -12.74822 -12.53383 -12.25048 -11.97238 -11.68151 -11.15157 -10.98367 -10.46936 -10.30488 -9.68995 -9.18855 -9.00448 -8.51216 -6.58051 0.09790 0.59021 0.65204 0.93877 1.23615 1.33853 1.42789 2.04802 2.38811 2.45345 3.08601 3.34357 3.59219 3.83021 4.01076 4.15212 4.35029 4.38678 4.42885 4.56737 4.65417 4.70187 4.71372 4.84660 4.93598 4.98387 5.06381 5.14972 5.46056 5.50984 5.58900 5.64036 5.79902 5.89782 6.11099 6.24390 6.27922 6.58339 6.68709 6.74701 7.37807 8.05774 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.007052 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.715755 B = 3969.373363 C = 5163.007168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.731 5.731 3 C 0.385 3.615 4 C -0.245 4.245 5 C 0.071 3.929 6 C -0.181 4.181 7 C -0.027 4.027 8 C -0.263 4.263 9 C 0.126 3.874 10 F -0.158 7.158 11 C -0.290 4.290 12 C 0.113 3.887 13 C -0.444 4.444 14 H 0.071 0.929 15 C 0.059 3.941 16 N -0.824 5.824 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.270 1.270 20 H -0.252 1.252 21 C -0.217 4.217 22 C 0.133 3.867 23 N -0.572 5.572 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.408 0.592 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.105 0.895 32 H 0.298 0.702 33 H 0.120 0.880 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -7.198 -7.231 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.365 5.365 3 C 0.150 3.850 4 C -0.269 4.269 5 C 0.063 3.937 6 C -0.182 4.182 7 C -0.045 4.045 8 C -0.282 4.282 9 C 0.107 3.893 10 F -0.136 7.136 11 C -0.310 4.310 12 C 0.110 3.890 13 C -0.472 4.472 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.448 5.448 17 Si 0.773 3.227 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.176 1.176 21 C -0.240 4.240 22 C -0.022 4.022 23 N -0.291 5.291 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.066 0.934 27 H 0.243 0.757 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.633 -7.879 -6.990 11.507 hybrid contribution -0.006 1.693 0.347 1.728 sum -4.640 -6.187 -6.643 10.195 Atomic orbital electron populations 1.21742 0.77535 1.04386 1.01313 1.44252 1.06563 1.04170 1.81532 1.18445 0.88291 0.87155 0.91152 1.21557 1.00909 0.90675 1.13787 1.18874 0.92884 0.91935 0.90009 1.18826 1.03299 0.95180 1.00936 1.20855 0.91860 0.95723 0.96094 1.20645 1.08212 0.94756 1.04614 1.17821 0.92798 0.81331 0.97355 1.91376 1.80265 1.45831 1.96174 1.21007 1.03459 1.01384 1.05182 1.17469 0.91257 0.89954 0.90353 1.19350 1.13334 0.96093 1.18409 0.91053 1.26710 0.93177 1.02294 0.93726 1.69659 1.22063 1.35494 1.17606 0.85716 0.77740 0.78019 0.81269 1.19303 1.19551 1.17604 1.22017 0.94844 0.99214 1.07878 1.22475 1.00200 0.86407 0.93077 1.67091 1.06543 1.32447 1.23036 0.92391 0.87487 0.93377 0.75683 0.84283 0.84035 0.84017 0.87700 0.89122 0.86179 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 9.92 127.77 1.27 2.92 16 2 N -0.73 -18.02 5.89 -366.68 -2.16 -20.18 16 3 C 0.39 12.86 7.65 132.97 1.02 13.88 16 4 C -0.24 -8.64 8.86 22.78 0.20 -8.44 16 5 C 0.07 2.88 4.93 -19.87 -0.10 2.78 16 6 C -0.18 -7.78 5.56 -19.62 -0.11 -7.89 16 7 C -0.03 -1.00 9.53 22.44 0.21 -0.79 16 8 C -0.26 -9.78 10.01 22.45 0.22 -9.56 16 9 C 0.13 5.39 7.28 22.36 0.16 5.56 16 10 F -0.16 -6.46 17.26 44.97 0.78 -5.68 16 11 C -0.29 -13.71 7.12 22.74 0.16 -13.55 16 12 C 0.11 5.48 5.09 -21.13 -0.11 5.37 16 13 C -0.44 -23.12 7.58 23.38 0.18 -22.95 16 14 H 0.07 4.05 7.03 -2.91 -0.02 4.03 16 15 C 0.06 3.00 5.41 85.31 0.46 3.46 16 16 N -0.82 -42.58 13.92 21.85 0.30 -42.28 16 17 Si 0.95 41.42 24.53 68.60 1.68 43.10 16 18 H -0.27 -11.52 6.72 99.48 0.67 -10.85 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.25 -11.33 6.85 99.48 0.68 -10.65 16 21 C -0.22 -8.75 8.21 22.64 0.19 -8.56 16 22 C 0.13 4.79 11.16 84.54 0.94 5.73 16 23 N -0.57 -20.43 10.38 -193.57 -2.01 -22.44 16 24 H 0.06 0.98 7.92 -2.39 -0.02 0.96 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 0.92 7.93 -2.39 -0.02 0.90 16 27 H 0.41 8.77 8.95 -92.71 -0.83 7.94 16 28 H 0.14 4.33 6.70 -2.91 -0.02 4.31 16 29 H 0.14 4.24 8.05 -2.91 -0.02 4.22 16 30 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.11 5.06 4.80 -2.91 -0.01 5.04 16 32 H 0.30 13.84 8.29 -92.71 -0.77 13.07 16 33 H 0.12 5.11 7.39 -2.91 -0.02 5.09 16 34 H 0.17 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -58.71 292.29 3.55 -55.15 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.26 Total: 24.35 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.70 Total: -32.02 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.86 Total: -84.90 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.78 Total: -5.68 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.68 Total: 43.10 kcal Total: -58.71 3.55 -55.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244975675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.506 kcal (2) G-P(sol) polarization free energy of solvation -58.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds