Wall clock time and date at job start Mon Mar 30 2020 01:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39028 * 120.00138 * 2 1 4 4 C 1.38936 * 119.65073 * 0.02562 * 3 2 1 5 5 C 1.39420 * 118.95555 * 179.97438 * 4 3 2 6 6 C 1.48411 * 120.86509 * 179.72579 * 5 4 3 7 7 C 1.39697 * 119.98386 * 359.72543 * 6 5 4 8 8 C 1.38617 * 120.34948 * 179.76412 * 7 6 5 9 9 F 1.35099 * 119.83722 * 180.27915 * 8 7 6 10 10 C 1.37934 * 120.33149 * 0.51398 * 8 7 6 11 11 C 1.40710 * 119.96899 * 359.74412 * 10 8 7 12 12 C 1.41422 * 120.17758 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99848 * 150.17672 * 12 11 10 14 14 C 1.39930 * 119.99995 * 330.17592 * 12 11 10 15 15 N 1.30831 * 119.99799 * 161.72633 * 14 12 11 16 16 Si 1.86791 * 119.99946 * 341.72529 * 14 12 11 17 17 H 1.48503 * 109.47415 * 95.41143 * 16 14 12 18 18 H 1.48500 * 109.47342 * 215.41372 * 16 14 12 19 19 H 1.48498 * 109.47438 * 335.41290 * 16 14 12 20 20 C 1.38739 * 119.99310 * 180.02562 * 6 5 4 21 21 C 1.39963 * 118.27889 * 0.02562 * 5 4 3 22 22 C 1.37806 * 119.18790 * 359.97399 * 21 5 4 23 23 N 1.32022 * 120.97918 * 0.02704 * 22 21 5 24 24 H 1.09001 * 109.46982 * 60.00125 * 1 2 3 25 25 H 1.08996 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47178 * 299.99897 * 1 2 3 27 27 H 0.97005 * 119.99775 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.52378 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.82177 * 0.02562 * 7 6 5 30 30 H 1.07995 * 120.02143 * 179.76305 * 10 8 7 31 31 H 0.97003 * 119.99670 * 180.02562 * 15 14 12 32 32 H 1.08008 * 120.16087 * 359.97438 * 20 6 5 33 33 H 1.07998 * 120.41041 * 179.97438 * 21 5 4 34 34 H 1.08002 * 119.50927 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 6 1.4582 2.4030 0.0005 5 6 2.1700 3.6018 0.0011 6 6 1.4632 4.9069 -0.0044 7 6 0.0668 4.9445 -0.0160 8 6 -0.6011 6.1592 -0.0163 9 9 -1.9519 6.1835 -0.0219 10 6 0.1065 7.3432 -0.0158 11 6 1.5134 7.3212 -0.0096 12 6 2.2433 8.5325 -0.0085 13 1 3.2150 8.5771 0.4609 14 6 1.7066 9.6733 -0.6156 15 7 2.1824 10.8560 -0.3215 16 14 0.3108 9.5076 -1.8458 17 1 -0.9868 9.7099 -1.1525 18 1 0.4668 10.5292 -2.9121 19 1 0.3425 8.1518 -2.4508 20 6 2.1895 6.0889 -0.0043 21 6 3.5683 3.5428 0.0005 22 6 4.1890 2.3124 0.0000 23 7 3.4845 1.1959 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9500 -0.8401 0.0004 28 1 0.3782 2.4063 0.0005 29 1 -0.4954 4.0224 -0.0206 30 1 -0.4190 8.2867 -0.0199 31 1 1.8101 11.6469 -0.7421 32 1 3.2693 6.0624 0.0002 33 1 4.1538 4.4503 0.0005 34 1 5.2678 2.2608 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244978280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:37 Heat of formation + Delta-G solvation = -8.357055 kcal Electronic energy + Delta-G solvation = -19618.225525 eV Core-core repulsion = 16429.126108 eV Total energy + Delta-G solvation = -3189.099417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.76901 -41.23808 -39.45236 -36.71831 -35.80215 -34.18659 -32.11003 -30.88508 -30.41855 -27.56163 -26.87056 -25.14620 -23.63364 -22.37962 -22.05662 -19.69357 -18.50261 -18.09061 -17.39124 -17.34125 -16.66511 -16.50465 -16.36473 -16.10942 -15.62595 -15.30291 -15.14501 -14.97515 -14.23528 -14.17632 -14.02748 -13.77956 -13.42543 -13.13180 -12.91366 -12.79607 -12.57331 -12.26556 -11.80868 -11.73308 -11.35961 -11.08383 -10.76899 -10.43284 -9.59897 -9.19997 -9.00376 -8.63006 -6.63764 -0.23681 0.46061 0.53443 1.07294 1.24698 1.33060 1.43863 2.05405 2.30607 2.42805 3.02854 3.35271 3.38632 3.68182 3.88218 4.13616 4.22149 4.31241 4.34373 4.39252 4.49281 4.65823 4.66005 4.78350 4.85982 4.89321 4.93970 5.14315 5.31734 5.41927 5.46542 5.63803 5.70049 5.81440 6.04171 6.13379 6.23980 6.53188 6.66292 6.68739 7.26210 8.06429 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.005152 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.832940 B = 5433.667115 C = 6341.341326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.728 5.728 3 C 0.390 3.610 4 C -0.237 4.237 5 C 0.036 3.964 6 C -0.005 4.005 7 C -0.245 4.245 8 C 0.122 3.878 9 F -0.155 7.155 10 C -0.286 4.286 11 C 0.096 3.904 12 C -0.468 4.468 13 H 0.075 0.925 14 C 0.058 3.942 15 N -0.831 5.831 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.255 1.255 20 C -0.189 4.189 21 C -0.232 4.232 22 C 0.148 3.852 23 N -0.565 5.565 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.410 0.590 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.298 0.702 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -16.289 -1.207 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.361 5.361 3 C 0.154 3.846 4 C -0.262 4.262 5 C 0.028 3.972 6 C -0.005 4.005 7 C -0.265 4.265 8 C 0.103 3.897 9 F -0.134 7.134 10 C -0.306 4.306 11 C 0.093 3.907 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.160 4.160 15 N -0.455 5.455 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.179 1.179 20 C -0.209 4.209 21 C -0.254 4.254 22 C -0.008 4.008 23 N -0.284 5.284 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.917 -16.770 -1.212 16.923 hybrid contribution -0.984 1.262 -0.288 1.626 sum -2.901 -15.508 -1.499 15.848 Atomic orbital electron populations 1.21785 0.77549 1.04608 1.01414 1.44303 1.06621 1.04363 1.80837 1.18451 0.88371 0.87026 0.90768 1.21522 1.01348 0.90838 1.12467 1.19053 0.93662 0.91558 0.92890 1.18339 0.92035 0.91712 0.98410 1.20648 0.93915 0.95653 1.16264 1.17480 0.75654 0.94901 1.01616 1.91379 1.30181 1.97605 1.94251 1.21129 0.95217 0.96076 1.18224 1.17519 0.90551 0.93668 0.88952 1.19502 1.04759 0.92643 1.32738 0.90664 1.26680 0.98271 0.93862 0.97143 1.69691 1.39708 0.99865 1.36264 0.85680 0.78383 0.79671 0.78772 1.19108 1.19477 1.17863 1.21434 0.99551 0.90611 1.09269 1.22141 0.93907 1.00485 1.08877 1.22722 1.00771 0.85873 0.91441 1.67167 1.06295 1.32839 1.22101 0.92788 0.87394 0.92771 0.75376 0.84144 0.84445 0.87610 0.89150 0.85538 0.84081 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 9.92 127.77 1.27 2.57 16 2 N -0.73 -14.63 5.89 -366.66 -2.16 -16.79 16 3 C 0.39 10.71 7.65 133.00 1.02 11.73 16 4 C -0.24 -7.09 8.71 22.72 0.20 -6.89 16 5 C 0.04 1.23 5.91 -19.86 -0.12 1.11 16 6 C 0.00 -0.18 5.87 -20.09 -0.12 -0.30 16 7 C -0.24 -9.65 9.43 22.71 0.21 -9.44 16 8 C 0.12 5.36 7.28 22.29 0.16 5.52 16 9 F -0.16 -6.43 17.26 44.97 0.78 -5.65 16 10 C -0.29 -13.72 7.14 22.80 0.16 -13.56 16 11 C 0.10 4.71 5.10 -21.32 -0.11 4.60 16 12 C -0.47 -24.75 9.57 23.46 0.22 -24.53 16 13 H 0.08 4.17 8.06 -2.91 -0.02 4.15 16 14 C 0.06 2.97 5.40 85.25 0.46 3.43 16 15 N -0.83 -43.34 13.93 21.82 0.30 -43.04 16 16 Si 0.95 41.93 24.52 68.60 1.68 43.62 16 17 H -0.27 -11.47 6.71 99.48 0.67 -10.81 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.25 -11.60 6.86 99.48 0.68 -10.92 16 20 C -0.19 -8.24 9.19 22.96 0.21 -8.03 16 21 C -0.23 -6.99 9.49 22.59 0.21 -6.78 16 22 C 0.15 3.90 11.16 84.56 0.94 4.85 16 23 N -0.57 -16.01 10.38 -193.51 -2.01 -18.02 16 24 H 0.05 0.82 7.93 -2.39 -0.02 0.80 16 25 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.82 7.92 -2.39 -0.02 0.80 16 27 H 0.41 6.93 8.95 -92.70 -0.83 6.10 16 28 H 0.14 3.81 4.96 -2.91 -0.01 3.79 16 29 H 0.14 4.59 6.27 -2.91 -0.02 4.57 16 30 H 0.11 5.15 4.72 -2.91 -0.01 5.13 16 31 H 0.30 13.94 8.30 -92.71 -0.77 13.17 16 32 H 0.13 5.07 6.27 -2.91 -0.02 5.06 16 33 H 0.14 4.04 6.32 -2.91 -0.02 4.02 16 34 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -59.26 290.36 3.60 -55.66 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.27 Total: 19.93 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.73 Total: -35.71 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -3.86 Total: -77.85 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.78 Total: -5.65 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.68 Total: 43.62 kcal Total: -59.26 3.60 -55.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244978280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.307 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds