Wall clock time and date at job start Mon Mar 30 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38574 * 120.08593 * 2 1 4 4 N 1.39861 * 120.02514 * 359.97438 * 3 2 1 5 5 C 1.39196 * 119.96078 * 179.79453 * 3 2 1 6 6 F 1.35105 * 119.92825 * 180.23212 * 5 3 2 7 7 C 1.38396 * 120.13703 * 0.45730 * 5 3 2 8 8 C 1.38017 * 120.18335 * 359.79420 * 7 5 3 9 9 C 1.39331 * 120.08655 * 180.27242 * 2 1 3 10 10 C 1.48280 * 120.07417 * 359.95802 * 9 2 1 11 11 C 1.39924 * 119.60757 * 133.42639 * 10 9 2 12 12 C 1.38681 * 119.46028 * 179.97438 * 11 10 9 13 13 C 1.38304 * 118.69143 * 0.02562 * 12 11 10 14 14 C 1.40676 * 119.19153 * 359.97438 * 13 12 11 15 15 C 1.41374 * 119.76641 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00462 * 353.27481 * 15 14 13 17 17 C 1.40020 * 119.99937 * 173.27415 * 15 14 13 18 18 N 1.30750 * 119.99835 * 352.80129 * 17 15 14 19 19 Si 1.86797 * 119.99971 * 172.80081 * 17 15 14 20 20 H 1.48504 * 109.47055 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47154 * 119.99910 * 19 17 15 22 22 H 1.48492 * 109.47271 * 240.00087 * 19 17 15 23 23 N 1.32228 * 119.60386 * 313.15482 * 10 9 2 24 24 H 1.09006 * 109.47206 * 275.33239 * 1 2 3 25 25 H 1.09002 * 109.47024 * 35.33096 * 1 2 3 26 26 H 1.08995 * 109.47142 * 155.32747 * 1 2 3 27 27 H 0.97001 * 119.99363 * 0.02562 * 4 3 2 28 28 H 0.96999 * 120.00673 * 180.02562 * 4 3 2 29 29 H 1.08003 * 119.91064 * 179.77438 * 7 5 3 30 30 H 1.07997 * 119.98621 * 179.97438 * 8 7 5 31 31 H 1.07993 * 120.27133 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.65409 * 180.02562 * 12 11 10 33 33 H 1.08000 * 120.40390 * 180.02562 * 13 12 11 34 34 H 0.96997 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2017 1.1990 0.0000 4 7 1.5048 2.4116 -0.0005 5 6 3.5937 1.1960 0.0043 6 9 4.2703 2.3654 0.0091 7 6 4.2859 -0.0024 -0.0009 8 6 3.5999 -1.2000 -0.0062 9 6 2.2055 -1.2056 -0.0057 10 6 1.4677 -2.4918 -0.0109 11 6 1.8486 -3.5037 -0.8991 12 6 1.1568 -4.7056 -0.9010 13 6 0.1041 -4.8671 -0.0187 14 6 -0.2310 -3.8127 0.8501 15 6 -1.3053 -3.9645 1.7565 16 1 -1.9334 -4.8416 1.7075 17 6 -1.5549 -2.9776 2.7179 18 7 -0.7152 -1.9871 2.8712 19 14 -3.0874 -3.0761 3.7814 20 1 -3.8682 -4.2846 3.4138 21 1 -2.6936 -3.1577 5.2109 22 1 -3.9185 -1.8646 3.5653 23 7 0.4612 -2.6708 0.8276 24 1 -0.3634 0.0955 1.0233 25 1 -0.3633 0.8384 -0.5943 26 1 -0.3633 -0.9338 -0.4290 27 1 0.5348 2.4134 -0.0005 28 1 1.9913 3.2508 -0.0009 29 1 5.3660 -0.0004 -0.0012 30 1 4.1434 -2.1333 -0.0107 31 1 2.6751 -3.3502 -1.5771 32 1 1.4346 -5.4998 -1.5781 33 1 -0.4534 -5.7919 0.0036 34 1 -0.8880 -1.3037 3.5375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245455654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:21 Heat of formation + Delta-G solvation = 6.217959 kcal Electronic energy + Delta-G solvation = -20243.462863 eV Core-core repulsion = 17054.995466 eV Total energy + Delta-G solvation = -3188.467397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.41778 -39.25274 -37.77512 -34.47311 -33.59084 -32.16762 -30.40446 -29.95231 -27.98089 -26.45040 -25.40413 -22.75391 -21.58152 -20.83360 -20.17960 -17.56277 -17.26877 -16.64012 -16.17181 -15.23837 -15.19078 -14.69982 -14.66359 -14.28827 -13.90587 -13.28373 -13.10908 -12.97570 -12.67818 -12.31521 -12.03159 -11.52182 -11.38538 -11.29065 -11.07849 -11.07287 -10.77797 -10.65095 -10.42582 -10.30488 -9.94522 -9.38940 -8.42209 -8.08725 -7.62015 -7.39931 -7.08764 -6.49436 -4.54401 1.56305 1.92234 2.71495 2.96751 3.07017 3.10429 3.15910 3.91444 4.08175 4.19740 4.68855 4.70720 5.21712 5.28915 5.61639 5.70478 5.83121 6.05683 6.11158 6.19175 6.31998 6.47589 6.50274 6.57556 6.69965 6.76761 6.79738 7.03856 7.07250 7.13481 7.28095 7.36661 7.53450 7.67934 7.75934 7.95958 7.98966 8.18476 8.61807 8.86723 9.98756 10.25468 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.006448 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.631122 B = 4341.089122 C = 5406.313101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.096 4.096 3 C 0.179 3.821 4 N -0.877 5.877 5 C 0.004 3.996 6 F -0.154 7.154 7 C -0.120 4.120 8 C -0.132 4.132 9 C 0.027 3.973 10 C 0.175 3.825 11 C -0.296 4.296 12 C -0.060 4.060 13 C -0.272 4.272 14 C 0.255 3.745 15 C -0.433 4.433 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.713 5.713 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.273 1.273 23 N -0.460 5.460 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.401 0.599 28 H 0.395 0.605 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 5.727 -3.425 7.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C 0.075 3.925 4 N -0.419 5.419 5 C -0.020 4.020 6 F -0.133 7.133 7 C -0.139 4.139 8 C -0.153 4.153 9 C 0.025 3.975 10 C 0.030 3.970 11 C -0.320 4.320 12 C -0.084 4.084 13 C -0.295 4.295 14 C 0.130 3.870 15 C -0.464 4.464 16 H 0.102 0.898 17 C -0.152 4.152 18 N -0.334 5.334 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.198 1.198 23 N -0.173 5.173 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.230 0.770 28 H 0.223 0.777 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.984 6.545 -2.684 7.678 hybrid contribution -0.353 -0.241 -0.054 0.431 sum 2.632 6.304 -2.738 7.359 Atomic orbital electron populations 1.20541 0.89896 1.01474 1.02735 1.19331 0.96671 0.89548 1.04567 1.17436 0.89186 0.87411 0.98438 1.42303 1.09007 1.04530 1.86044 1.17087 0.87941 0.81510 1.15444 1.91368 1.80115 1.46576 1.95224 1.20652 0.99743 0.90712 1.02782 1.20786 0.93082 0.97145 1.04289 1.18507 0.91984 0.91628 0.95355 1.19623 0.93728 0.90882 0.92776 1.21172 1.06671 0.96508 1.07644 1.20788 0.95028 0.95769 0.96781 1.21796 1.02869 1.00698 1.04175 1.18538 0.91296 0.86627 0.90513 1.19589 1.10562 1.04870 1.11349 0.89832 1.26004 0.97210 0.94717 0.97279 1.70087 1.31337 1.07188 1.24791 0.86346 0.81823 0.79410 0.79709 1.18464 1.19959 1.19820 1.68871 1.05901 1.22691 1.19810 0.89958 0.94515 0.90389 0.76950 0.77706 0.85462 0.85507 0.88509 0.88481 0.88326 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 8.47 36.01 0.30 -1.43 16 2 C -0.10 -1.87 5.92 -104.09 -0.62 -2.49 16 3 C 0.18 3.11 6.74 -83.71 -0.56 2.54 16 4 N -0.88 -12.12 9.00 32.44 0.29 -11.83 16 5 C 0.00 0.07 7.31 -39.17 -0.29 -0.22 16 6 F -0.15 -2.47 16.63 2.25 0.04 -2.43 16 7 C -0.12 -1.95 10.00 -39.60 -0.40 -2.35 16 8 C -0.13 -2.39 9.40 -39.21 -0.37 -2.76 16 9 C 0.03 0.56 5.62 -104.91 -0.59 -0.03 16 10 C 0.17 4.10 5.48 -82.94 -0.45 3.64 16 11 C -0.30 -6.52 9.46 -38.79 -0.37 -6.89 16 12 C -0.06 -1.30 10.15 -39.39 -0.40 -1.70 16 13 C -0.27 -6.48 9.83 -38.64 -0.38 -6.86 16 14 C 0.26 6.69 6.53 -85.01 -0.55 6.13 16 15 C -0.43 -11.08 9.13 -37.72 -0.34 -11.43 16 16 H 0.08 2.03 7.86 -52.49 -0.41 1.61 16 17 C 0.07 1.78 5.47 -17.34 -0.09 1.69 16 18 N -0.71 -17.90 11.55 55.55 0.64 -17.26 16 19 Si 0.90 17.98 29.57 -169.99 -5.03 12.95 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 N -0.46 -11.86 6.00 -7.68 -0.05 -11.91 16 24 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.04 0.58 6.83 -51.93 -0.35 0.23 16 26 H 0.08 1.73 6.23 -51.93 -0.32 1.40 16 27 H 0.40 5.02 6.94 -40.82 -0.28 4.74 16 28 H 0.40 4.71 8.31 -40.82 -0.34 4.37 16 29 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.13 2.12 7.95 -52.49 -0.42 1.71 16 31 H 0.10 1.90 7.96 -52.49 -0.42 1.48 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.27 6.27 8.29 -40.82 -0.34 5.94 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -27.59 296.25 -8.12 -35.71 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.37 Total: 12.45 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -5.11 Total: -22.15 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.89 Total: -41.00 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.59 -8.12 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245455654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.925 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds