Wall clock time and date at job start Mon Mar 30 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38595 * 120.08765 * 2 1 4 4 N 1.39857 * 120.02174 * 0.02623 * 3 2 1 5 5 C 1.39178 * 119.96164 * 180.29676 * 3 2 1 6 6 F 1.35101 * 119.93445 * 179.72275 * 5 3 2 7 7 C 1.38390 * 120.12963 * 359.44790 * 5 3 2 8 8 C 1.38048 * 120.17426 * 0.55711 * 7 5 3 9 9 C 1.39296 * 120.08761 * 180.02562 * 2 1 3 10 10 C 1.48349 * 120.06630 * 359.97438 * 9 2 1 11 11 C 1.38914 * 119.61407 * 187.21688 * 10 9 2 12 12 C 1.40837 * 118.76348 * 179.97438 * 11 10 9 13 13 C 1.41525 * 120.98963 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99715 * 22.19137 * 13 12 11 15 15 C 1.40048 * 120.00329 * 202.18760 * 13 12 11 16 16 N 1.30736 * 119.99353 * 18.73492 * 15 13 12 17 17 Si 1.86799 * 120.00134 * 198.73698 * 15 13 12 18 18 H 1.48502 * 109.46928 * 90.00024 * 17 15 13 19 19 H 1.48496 * 109.46862 * 210.00123 * 17 15 13 20 20 H 1.48495 * 109.46783 * 329.99793 * 17 15 13 21 21 C 1.41148 * 118.02519 * 0.02562 * 12 11 10 22 22 C 1.37736 * 119.07509 * 0.02562 * 21 12 11 23 23 N 1.31926 * 121.16123 * 359.74053 * 22 21 12 24 24 H 1.08991 * 109.47373 * 97.08858 * 1 2 3 25 25 H 1.09007 * 109.46811 * 217.08793 * 1 2 3 26 26 H 1.09002 * 109.47238 * 337.08266 * 1 2 3 27 27 H 0.96999 * 119.99765 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00421 * 179.72102 * 4 3 2 29 29 H 1.07997 * 119.91106 * 180.25126 * 7 5 3 30 30 H 1.07998 * 119.97193 * 179.70171 * 8 7 5 31 31 H 1.07998 * 120.62249 * 359.95564 * 11 10 9 32 32 H 0.97010 * 119.99311 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.46058 * 179.97438 * 21 12 11 34 34 H 1.08001 * 119.41594 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2018 1.1992 0.0000 4 7 1.5048 2.4117 0.0006 5 6 3.5935 1.1962 -0.0062 6 9 4.2703 2.3655 -0.0119 7 6 4.2856 -0.0023 -0.0009 8 6 3.5991 -1.2000 -0.0010 9 6 2.2053 -1.2053 -0.0005 10 6 1.4670 -2.4920 -0.0005 11 6 2.1646 -3.6837 0.1506 12 6 1.4458 -4.8948 0.1486 13 6 2.1089 -6.1361 0.2986 14 1 3.0832 -6.1751 0.7629 15 6 1.5017 -7.3137 -0.1551 16 7 0.5265 -7.2535 -1.0237 17 14 2.0852 -8.9703 0.4810 18 1 1.3124 -9.3342 1.6958 19 1 1.8778 -10.0033 -0.5655 20 1 3.5291 -8.8903 0.8182 21 6 0.0444 -4.8339 -0.0086 22 6 -0.5602 -3.6048 -0.1531 23 7 0.1465 -2.4909 -0.1416 24 1 -0.3633 -0.1268 -1.0197 25 1 -0.3633 -0.8198 0.6198 26 1 -0.3634 0.9466 0.4002 27 1 0.5348 2.4135 0.0013 28 1 1.9913 3.2509 0.0046 29 1 5.3656 -0.0005 -0.0017 30 1 4.1425 -2.1333 -0.0017 31 1 3.2383 -3.6816 0.2673 32 1 0.1056 -8.0693 -1.3376 33 1 -0.5455 -5.7386 -0.0164 34 1 -1.6322 -3.5518 -0.2734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245456684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:22 Heat of formation + Delta-G solvation = -8.336058 kcal Electronic energy + Delta-G solvation = -19742.991032 eV Core-core repulsion = 16553.892526 eV Total energy + Delta-G solvation = -3189.098506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.74327 -40.92785 -39.49454 -36.14646 -35.67955 -33.55040 -32.60229 -31.35222 -29.05054 -28.03586 -27.44401 -24.43077 -23.37889 -22.16088 -22.03569 -19.39439 -18.52553 -18.01027 -17.61874 -17.06386 -16.57330 -16.39917 -16.19036 -15.94453 -15.40999 -14.94062 -14.84864 -14.42940 -14.21786 -13.92781 -13.87509 -13.31397 -13.05132 -12.89421 -12.82366 -12.64828 -12.61353 -12.05388 -11.88316 -11.72183 -11.60429 -11.22440 -10.11208 -9.98731 -9.60798 -8.90324 -8.69463 -8.38447 -6.55245 -0.11414 0.50645 0.93535 1.19036 1.39846 1.53023 1.58453 2.18322 2.62633 2.86729 2.91299 3.33694 3.58193 3.77844 3.87457 4.18209 4.24575 4.40119 4.66180 4.80312 4.84871 4.94239 4.97052 5.00092 5.09503 5.15316 5.23562 5.35317 5.47313 5.51436 5.67092 5.80251 5.90866 5.99209 6.23637 6.47224 6.53374 6.80738 6.80962 6.91458 7.67296 8.22861 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032997 B = 0.004398 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.349785 B = 6364.761742 C = 7121.092656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.119 4.119 3 C 0.183 3.817 4 N -0.863 5.863 5 C 0.003 3.997 6 F -0.145 7.145 7 C -0.108 4.108 8 C -0.141 4.141 9 C -0.012 4.012 10 C 0.150 3.850 11 C -0.269 4.269 12 C 0.098 3.902 13 C -0.487 4.487 14 H 0.083 0.917 15 C 0.041 3.959 16 N -0.811 5.811 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.235 4.235 22 C 0.081 3.919 23 N -0.550 5.550 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.410 0.590 28 H 0.407 0.593 29 H 0.158 0.842 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.293 0.707 33 H 0.115 0.885 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 10.490 1.817 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.077 3.923 4 N -0.406 5.406 5 C -0.021 4.021 6 F -0.124 7.124 7 C -0.127 4.127 8 C -0.162 4.162 9 C -0.014 4.014 10 C 0.017 3.983 11 C -0.292 4.292 12 C 0.090 3.910 13 C -0.518 4.518 14 H 0.101 0.899 15 C -0.177 4.177 16 N -0.436 5.436 17 Si 0.806 3.194 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.257 4.257 22 C -0.070 4.070 23 N -0.265 5.265 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.237 0.763 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.418 11.180 1.558 11.377 hybrid contribution 0.494 -1.320 0.107 1.413 sum 1.912 9.860 1.665 10.181 Atomic orbital electron populations 1.20766 0.89168 1.01889 1.02694 1.19522 0.97522 0.89629 1.05788 1.17450 0.89438 0.87983 0.97466 1.42334 1.09604 1.03892 1.84770 1.17233 0.88143 0.81961 1.14784 1.91400 1.79924 1.46042 1.95048 1.20951 1.01364 0.89701 1.00708 1.20977 0.92569 0.98478 1.04143 1.18573 0.92958 0.90829 0.99059 1.19545 0.90216 0.91536 0.97025 1.22024 0.99484 0.92694 1.15014 1.18154 0.92496 0.93255 0.87062 1.19903 1.04711 0.91476 1.35666 0.89916 1.26827 0.93697 1.05115 0.92059 1.69817 1.20079 1.32802 1.20893 0.85142 0.79974 0.75338 0.78963 1.18578 1.19105 1.18031 1.22267 0.95490 0.98172 1.09781 1.22456 0.99515 0.88310 0.96768 1.67769 1.06542 1.29561 1.22675 0.92264 0.89505 0.91956 0.75817 0.76342 0.82398 0.84715 0.86709 0.89606 0.86725 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.81 8.27 71.24 0.59 -2.22 16 2 C -0.12 -4.07 5.92 -19.52 -0.12 -4.19 16 3 C 0.18 5.35 6.74 38.17 0.26 5.61 16 4 N -0.86 -18.57 9.00 -51.28 -0.46 -19.04 16 5 C 0.00 0.09 7.31 22.53 0.16 0.25 16 6 F -0.15 -3.92 16.63 44.97 0.75 -3.17 16 7 C -0.11 -3.12 10.00 22.26 0.22 -2.89 16 8 C -0.14 -4.78 9.40 22.50 0.21 -4.57 16 9 C -0.01 -0.49 5.87 -20.05 -0.12 -0.60 16 10 C 0.15 6.85 6.65 41.85 0.28 7.13 16 11 C -0.27 -13.13 9.23 23.07 0.21 -12.92 16 12 C 0.10 5.18 5.62 -21.12 -0.12 5.07 16 13 C -0.49 -25.25 9.11 23.52 0.21 -25.04 16 14 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 15 C 0.04 1.96 5.17 85.29 0.44 2.40 16 16 N -0.81 -40.37 10.92 21.84 0.24 -40.13 16 17 Si 0.99 36.14 29.60 68.60 2.03 38.17 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.23 -12.02 8.81 22.87 0.20 -11.81 16 22 C 0.08 3.75 11.15 84.56 0.94 4.69 16 23 N -0.55 -24.91 6.19 -185.37 -1.15 -26.06 16 24 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 25 H 0.09 3.20 5.68 -2.38 -0.01 3.18 16 26 H 0.06 1.52 6.20 -2.39 -0.01 1.50 16 27 H 0.41 7.47 6.68 -92.71 -0.62 6.85 16 28 H 0.41 7.26 8.31 -92.71 -0.77 6.49 16 29 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.14 4.44 6.23 -2.91 -0.02 4.42 16 31 H 0.11 5.18 6.24 -2.91 -0.02 5.16 16 32 H 0.29 13.06 8.29 -92.70 -0.77 12.29 16 33 H 0.11 6.02 6.14 -2.91 -0.02 6.00 16 34 H 0.15 5.85 8.06 -2.91 -0.02 5.83 16 Total: -1.00 -58.29 288.84 4.58 -53.70 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.21 Total: 35.63 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.38 Total: -39.11 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.37 Total: -85.22 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.75 Total: -3.17 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -58.29 4.58 -53.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245456684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -58.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds