Wall clock time and date at job start Mon Mar 30 2020 01:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38505 * 120.09565 * 2 1 4 4 N 1.39843 * 120.00582 * 359.97438 * 3 2 1 5 5 C 1.39270 * 119.98129 * 179.97438 * 3 2 1 6 6 F 1.35097 * 119.91461 * 179.97438 * 5 3 2 7 7 C 1.38481 * 120.17496 * 0.02562 * 5 3 2 8 8 C 1.37937 * 120.20140 * 359.71953 * 7 5 3 9 9 C 1.39570 * 120.10049 * 179.97438 * 2 1 3 10 10 C 1.47911 * 120.08551 * 0.03243 * 9 2 1 11 11 C 1.39925 * 119.45230 * 173.27383 * 10 9 2 12 12 C 1.36583 * 119.46795 * 179.73993 * 11 10 9 13 13 C 1.41320 * 118.41415 * 0.51972 * 12 11 10 14 14 C 1.41037 * 120.55025 * 179.70204 * 13 12 11 15 15 H 1.07999 * 119.99885 * 328.83010 * 14 13 12 16 16 C 1.40003 * 120.00135 * 148.83556 * 14 13 12 17 17 N 1.30802 * 120.00400 * 166.87316 * 16 14 13 18 18 Si 1.86805 * 119.99817 * 346.86516 * 16 14 13 19 19 H 1.48498 * 109.47103 * 92.55768 * 18 16 14 20 20 H 1.48495 * 109.47120 * 212.56074 * 18 16 14 21 21 H 1.48500 * 109.46995 * 332.55776 * 18 16 14 22 22 C 1.40949 * 118.89574 * 359.72421 * 13 12 11 23 23 N 1.31257 * 120.40421 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.47642 * 262.88060 * 1 2 3 25 25 H 1.08997 * 109.47202 * 22.87745 * 1 2 3 26 26 H 1.09006 * 109.47025 * 142.87544 * 1 2 3 27 27 H 0.96996 * 120.00745 * 0.02562 * 4 3 2 28 28 H 0.97009 * 119.99742 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.89703 * 179.97438 * 7 5 3 30 30 H 1.08001 * 119.99200 * 180.27500 * 8 7 5 31 31 H 1.07999 * 120.26506 * 359.97126 * 11 10 9 32 32 H 1.07999 * 120.79371 * 180.23809 * 12 11 10 33 33 H 0.96995 * 120.00303 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.79660 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1983 0.0000 4 7 1.5044 2.4106 -0.0005 5 6 3.5942 1.1955 0.0005 6 9 4.2703 2.3652 0.0000 7 6 4.2879 -0.0030 0.0005 8 6 3.6037 -1.2007 0.0058 9 6 2.2069 -1.2075 0.0005 10 6 1.4715 -2.4908 0.0004 11 6 2.1794 -3.6894 -0.1418 12 6 1.5012 -4.8750 -0.1366 13 6 0.0952 -4.8448 0.0025 14 6 -0.6506 -6.0418 0.0073 15 1 -0.3083 -6.8935 -0.5617 16 6 -1.8346 -6.1259 0.7496 17 7 -2.6563 -7.1257 0.5593 18 14 -2.2409 -4.8104 2.0121 19 1 -3.0703 -3.7547 1.3776 20 1 -2.9925 -5.4204 3.1382 21 1 -0.9827 -4.2104 2.5242 22 6 -0.5494 -3.5984 0.1358 23 7 0.1475 -2.4861 0.1299 24 1 -0.3634 -0.1274 1.0197 25 1 -0.3633 0.9468 -0.3995 26 1 -0.3633 -0.8194 -0.6203 27 1 0.5345 2.4125 -0.0005 28 1 1.9910 3.2499 -0.0009 29 1 5.3679 0.0001 0.0005 30 1 4.1481 -2.1335 0.0103 31 1 3.2538 -3.6774 -0.2509 32 1 2.0264 -5.8128 -0.2409 33 1 -3.4765 -7.1841 1.0738 34 1 -1.6234 -3.5584 0.2425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245458087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:24 Heat of formation + Delta-G solvation = 7.694001 kcal Electronic energy + Delta-G solvation = -19881.566887 eV Core-core repulsion = 16693.163496 eV Total energy + Delta-G solvation = -3188.403391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.47140 -39.54692 -38.16881 -34.69764 -34.06754 -32.38397 -31.18974 -30.53239 -28.29352 -26.64412 -25.23157 -22.69860 -22.12732 -20.97023 -20.48110 -17.89975 -17.28884 -17.10279 -16.46009 -15.83539 -15.30610 -14.96189 -14.79914 -14.42097 -14.04698 -13.61207 -13.28928 -12.97443 -12.86031 -12.72097 -12.49481 -12.19394 -11.60260 -11.58290 -11.31918 -11.12578 -10.91152 -10.85378 -10.50477 -10.38440 -10.09480 -9.56575 -8.72913 -8.60773 -8.07331 -7.50932 -7.25901 -7.17035 -4.75243 1.29502 1.79695 2.45645 2.54066 2.97320 3.07934 3.15677 3.75053 3.96180 4.00250 4.47577 4.63487 5.07833 5.14699 5.26216 5.45367 5.58152 5.74149 5.92947 6.04858 6.09509 6.21045 6.29426 6.36993 6.44864 6.46952 6.68688 6.72572 6.82454 7.00967 7.05098 7.17704 7.34734 7.42558 7.64617 7.74597 7.86013 7.95891 8.24168 8.38941 9.20998 9.73830 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.004881 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.763101 B = 5734.900351 C = 6357.512450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.128 4.128 3 C 0.188 3.812 4 N -0.878 5.878 5 C -0.012 4.012 6 F -0.155 7.155 7 C -0.108 4.108 8 C -0.156 4.156 9 C 0.047 3.953 10 C -0.005 4.005 11 C -0.100 4.100 12 C -0.181 4.181 13 C 0.047 3.953 14 C -0.414 4.414 15 H 0.097 0.903 16 C 0.080 3.920 17 N -0.788 5.788 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.244 1.244 22 C -0.033 4.033 23 N -0.426 5.426 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.106 0.894 27 H 0.400 0.600 28 H 0.395 0.605 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.292 0.708 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 10.759 0.388 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.084 3.916 4 N -0.420 5.420 5 C -0.036 4.036 6 F -0.134 7.134 7 C -0.128 4.128 8 C -0.177 4.177 9 C 0.045 3.955 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.206 4.206 13 C 0.042 3.958 14 C -0.442 4.442 15 H 0.115 0.885 16 C -0.142 4.142 17 N -0.411 5.411 18 Si 0.739 3.261 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.167 1.167 22 C -0.197 4.197 23 N -0.134 5.134 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.124 0.876 27 H 0.231 0.769 28 H 0.223 0.777 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.964 11.331 0.499 12.381 hybrid contribution 0.127 0.056 0.449 0.470 sum 5.092 11.387 0.949 12.510 Atomic orbital electron populations 1.20868 0.90067 1.01075 1.03132 1.19360 0.96698 0.89614 1.07684 1.17450 0.89197 0.87381 0.97605 1.42390 1.09038 1.04656 1.85947 1.17082 0.87923 0.81528 1.17096 1.91362 1.80136 1.46550 1.95348 1.20645 0.99686 0.90723 1.01723 1.20783 0.93102 0.97165 1.06605 1.18332 0.91720 0.91094 0.94338 1.18779 0.89477 0.90690 1.14900 1.21299 0.99105 0.93050 0.98574 1.21074 0.93674 0.96847 1.08981 1.18717 0.92659 0.94126 0.90309 1.19596 1.02735 0.98673 1.23175 0.88468 1.26296 0.94021 0.96476 0.97443 1.69620 1.08596 1.28771 1.34069 0.86289 0.80643 0.79762 0.79365 1.18749 1.21298 1.16676 1.22560 0.98479 0.87948 1.10755 1.67246 1.07141 1.30644 1.08370 0.91841 0.94946 0.87624 0.76921 0.77689 0.85536 0.85452 0.87192 0.86932 0.89694 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 8.27 36.00 0.30 -1.30 16 2 C -0.13 -2.25 5.93 -104.03 -0.62 -2.87 16 3 C 0.19 2.98 6.74 -83.72 -0.56 2.42 16 4 N -0.88 -10.99 9.00 32.44 0.29 -10.70 16 5 C -0.01 -0.20 7.32 -39.11 -0.29 -0.48 16 6 F -0.15 -2.34 16.63 2.25 0.04 -2.30 16 7 C -0.11 -1.62 10.00 -39.60 -0.40 -2.02 16 8 C -0.16 -2.52 9.40 -39.16 -0.37 -2.88 16 9 C 0.05 0.88 5.87 -104.90 -0.62 0.26 16 10 C -0.01 -0.11 6.67 -82.75 -0.55 -0.67 16 11 C -0.10 -2.01 9.37 -39.55 -0.37 -2.38 16 12 C -0.18 -3.90 9.87 -39.01 -0.39 -4.28 16 13 C 0.05 1.12 5.13 -106.64 -0.55 0.57 16 14 C -0.41 -10.23 9.61 -37.86 -0.36 -10.59 16 15 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.08 1.91 5.46 -17.33 -0.09 1.81 16 17 N -0.79 -19.22 13.93 55.55 0.77 -18.44 16 18 Si 0.91 19.40 24.43 -169.99 -4.15 15.25 16 19 H -0.26 -5.38 6.66 56.52 0.38 -5.00 16 20 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.24 -5.47 6.73 56.52 0.38 -5.09 16 22 C -0.03 -0.76 8.23 -16.77 -0.14 -0.90 16 23 N -0.43 -9.50 6.16 -9.11 -0.06 -9.56 16 24 H 0.06 1.10 8.13 -51.93 -0.42 0.67 16 25 H 0.03 0.44 6.20 -51.93 -0.32 0.12 16 26 H 0.11 2.01 5.66 -51.93 -0.29 1.71 16 27 H 0.40 4.42 6.67 -40.82 -0.27 4.15 16 28 H 0.40 4.28 8.31 -40.82 -0.34 3.94 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.13 1.82 6.20 -52.49 -0.33 1.50 16 31 H 0.11 1.84 6.20 -52.49 -0.33 1.51 16 32 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 34 H 0.13 3.03 4.48 -52.49 -0.24 2.79 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -26.04 282.82 -6.83 -32.87 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -2.98 Total: 11.94 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -5.00 Total: -23.31 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 1.01 Total: -38.70 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.15 Total: 15.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.04 -6.83 -32.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245458087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.560 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds