Wall clock time and date at job start Mon Mar 30 2020 01:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38505 * 120.09565 * 2 1 4 4 N 1.39843 * 120.00582 * 359.97438 * 3 2 1 5 5 C 1.39270 * 119.98129 * 179.97438 * 3 2 1 6 6 F 1.35097 * 119.91461 * 179.97438 * 5 3 2 7 7 C 1.38481 * 120.17496 * 0.02562 * 5 3 2 8 8 C 1.37937 * 120.20140 * 359.71953 * 7 5 3 9 9 C 1.39570 * 120.10049 * 179.97438 * 2 1 3 10 10 C 1.47911 * 120.08551 * 0.03243 * 9 2 1 11 11 C 1.39925 * 119.45230 * 173.27383 * 10 9 2 12 12 C 1.36583 * 119.46795 * 179.73993 * 11 10 9 13 13 C 1.41320 * 118.41415 * 0.51972 * 12 11 10 14 14 C 1.41037 * 120.55025 * 179.70204 * 13 12 11 15 15 H 1.07999 * 119.99885 * 328.83010 * 14 13 12 16 16 C 1.40003 * 120.00135 * 148.83556 * 14 13 12 17 17 N 1.30802 * 120.00400 * 166.87316 * 16 14 13 18 18 Si 1.86805 * 119.99817 * 346.86516 * 16 14 13 19 19 H 1.48498 * 109.47103 * 92.55768 * 18 16 14 20 20 H 1.48495 * 109.47120 * 212.56074 * 18 16 14 21 21 H 1.48500 * 109.46995 * 332.55776 * 18 16 14 22 22 C 1.40949 * 118.89574 * 359.72421 * 13 12 11 23 23 N 1.31257 * 120.40421 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.47642 * 262.88060 * 1 2 3 25 25 H 1.08997 * 109.47202 * 22.87745 * 1 2 3 26 26 H 1.09006 * 109.47025 * 142.87544 * 1 2 3 27 27 H 0.96996 * 120.00745 * 0.02562 * 4 3 2 28 28 H 0.97009 * 119.99742 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.89703 * 179.97438 * 7 5 3 30 30 H 1.08001 * 119.99200 * 180.27500 * 8 7 5 31 31 H 1.07999 * 120.26506 * 359.97126 * 11 10 9 32 32 H 1.07999 * 120.79371 * 180.23809 * 12 11 10 33 33 H 0.96995 * 120.00303 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.79660 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1983 0.0000 4 7 1.5044 2.4106 -0.0005 5 6 3.5942 1.1955 0.0005 6 9 4.2703 2.3652 0.0000 7 6 4.2879 -0.0030 0.0005 8 6 3.6037 -1.2007 0.0058 9 6 2.2069 -1.2075 0.0005 10 6 1.4715 -2.4908 0.0004 11 6 2.1794 -3.6894 -0.1418 12 6 1.5012 -4.8750 -0.1366 13 6 0.0952 -4.8448 0.0025 14 6 -0.6506 -6.0418 0.0073 15 1 -0.3083 -6.8935 -0.5617 16 6 -1.8346 -6.1259 0.7496 17 7 -2.6563 -7.1257 0.5593 18 14 -2.2409 -4.8104 2.0121 19 1 -3.0703 -3.7547 1.3776 20 1 -2.9925 -5.4204 3.1382 21 1 -0.9827 -4.2104 2.5242 22 6 -0.5494 -3.5984 0.1358 23 7 0.1475 -2.4861 0.1299 24 1 -0.3634 -0.1274 1.0197 25 1 -0.3633 0.9468 -0.3995 26 1 -0.3633 -0.8194 -0.6203 27 1 0.5345 2.4125 -0.0005 28 1 1.9910 3.2499 -0.0009 29 1 5.3679 0.0001 0.0005 30 1 4.1481 -2.1335 0.0103 31 1 3.2538 -3.6774 -0.2509 32 1 2.0264 -5.8128 -0.2409 33 1 -3.4765 -7.1841 1.0738 34 1 -1.6234 -3.5584 0.2425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245458087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:23 Heat of formation + Delta-G solvation = -6.805923 kcal Electronic energy + Delta-G solvation = -19882.195651 eV Core-core repulsion = 16693.163496 eV Total energy + Delta-G solvation = -3189.032155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.68413 -41.04446 -39.65101 -36.13871 -35.54741 -33.91645 -32.80262 -32.03935 -29.67768 -27.95869 -26.83923 -24.33402 -23.66644 -22.28263 -21.98661 -19.64616 -18.51108 -18.46114 -17.76465 -17.42205 -16.52390 -16.41599 -16.28058 -15.84473 -15.57440 -15.15373 -14.85023 -14.44117 -14.25360 -14.13231 -14.05405 -13.63637 -13.18790 -12.91279 -12.82019 -12.74937 -12.49107 -12.42582 -11.89443 -11.77495 -11.66567 -11.25936 -10.43290 -10.09960 -9.74303 -9.03774 -9.00364 -8.38640 -6.58542 -0.13770 0.55615 0.76192 0.92020 1.25519 1.38760 1.43638 2.03191 2.47683 2.88193 2.90321 3.39945 3.53200 3.59955 3.88499 4.14330 4.19652 4.35004 4.45680 4.55339 4.71309 4.75986 4.86373 4.93037 4.98696 5.09470 5.17997 5.22238 5.40482 5.47000 5.58561 5.70463 5.87016 5.94200 6.02852 6.15723 6.47552 6.49873 6.60538 6.90333 7.48237 8.03517 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033335 B = 0.004881 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.763101 B = 5734.900351 C = 6357.512450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.140 4.140 3 C 0.187 3.813 4 N -0.866 5.866 5 C -0.013 4.013 6 F -0.149 7.149 7 C -0.102 4.102 8 C -0.150 4.150 9 C 0.014 3.986 10 C 0.007 3.993 11 C -0.102 4.102 12 C -0.183 4.183 13 C 0.032 3.968 14 C -0.452 4.452 15 H 0.072 0.928 16 C 0.054 3.946 17 N -0.828 5.828 18 Si 0.961 3.039 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.264 1.264 22 C -0.049 4.049 23 N -0.436 5.436 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.408 0.592 28 H 0.406 0.594 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.128 0.872 33 H 0.300 0.700 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 13.599 0.671 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.081 3.919 4 N -0.409 5.409 5 C -0.037 4.037 6 F -0.128 7.128 7 C -0.121 4.121 8 C -0.171 4.171 9 C 0.012 3.988 10 C -0.128 4.128 11 C -0.121 4.121 12 C -0.208 4.208 13 C 0.027 3.973 14 C -0.481 4.481 15 H 0.090 0.910 16 C -0.164 4.164 17 N -0.452 5.452 18 Si 0.785 3.215 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.188 1.188 22 C -0.211 4.211 23 N -0.144 5.144 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.240 0.760 28 H 0.235 0.765 29 H 0.176 0.824 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.145 0.855 33 H 0.111 0.889 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.161 14.183 0.779 15.907 hybrid contribution -0.243 -0.446 0.288 0.584 sum 6.918 13.737 1.068 15.417 Atomic orbital electron populations 1.20752 0.90086 1.01702 1.02227 1.19467 0.96935 0.90142 1.08036 1.17474 0.89573 0.87792 0.97104 1.42373 1.09557 1.04139 1.84816 1.17299 0.88025 0.82110 1.16268 1.91385 1.79956 1.46294 1.95209 1.20968 1.01304 0.89765 1.00029 1.20990 0.91988 0.98645 1.05471 1.18444 0.92949 0.90257 0.97143 1.19464 0.89317 0.92486 1.11552 1.21683 1.01117 0.91888 0.97440 1.21387 0.93088 0.98389 1.07967 1.18856 0.93773 0.93842 0.90832 1.19496 1.04462 0.98648 1.25529 0.91012 1.26747 0.93717 0.97686 0.98216 1.69632 1.09576 1.30270 1.35768 0.85580 0.79614 0.78179 0.78131 1.17960 1.19745 1.18804 1.22580 0.98697 0.88219 1.11631 1.67384 1.07987 1.30020 1.08998 0.92730 0.92132 0.89976 0.76027 0.76458 0.82369 0.83433 0.83221 0.85455 0.88887 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 8.27 71.23 0.59 -2.34 16 2 C -0.14 -4.59 5.93 -19.48 -0.12 -4.71 16 3 C 0.19 5.29 6.74 38.17 0.26 5.54 16 4 N -0.87 -18.70 9.00 -51.29 -0.46 -19.17 16 5 C -0.01 -0.35 7.32 22.58 0.17 -0.19 16 6 F -0.15 -3.89 16.63 44.97 0.75 -3.14 16 7 C -0.10 -2.56 10.00 22.26 0.22 -2.34 16 8 C -0.15 -4.24 9.40 22.55 0.21 -4.03 16 9 C 0.01 0.48 5.87 -20.05 -0.12 0.36 16 10 C 0.01 0.29 6.67 41.93 0.28 0.57 16 11 C -0.10 -3.86 9.37 22.29 0.21 -3.65 16 12 C -0.18 -7.81 9.87 22.64 0.22 -7.58 16 13 C 0.03 1.54 5.13 -21.17 -0.11 1.43 16 14 C -0.45 -23.56 9.61 23.38 0.22 -23.33 16 15 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 16 C 0.05 2.71 5.46 85.27 0.47 3.18 16 17 N -0.83 -42.17 13.93 21.84 0.30 -41.86 16 18 Si 0.96 41.08 24.43 68.60 1.68 42.76 16 19 H -0.25 -10.39 6.66 99.48 0.66 -9.73 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.26 -11.99 6.73 99.48 0.67 -11.32 16 22 C -0.05 -2.34 8.23 85.44 0.70 -1.64 16 23 N -0.44 -19.33 6.16 -182.73 -1.13 -20.45 16 24 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 25 H 0.06 1.54 6.20 -2.39 -0.01 1.52 16 26 H 0.08 3.08 5.66 -2.38 -0.01 3.06 16 27 H 0.41 7.67 6.67 -92.71 -0.62 7.05 16 28 H 0.41 7.30 8.31 -92.70 -0.77 6.53 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.15 3.49 6.20 -2.91 -0.02 3.48 16 31 H 0.15 4.40 6.20 -2.91 -0.02 4.38 16 32 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 33 H 0.30 13.66 8.30 -92.71 -0.77 12.89 16 34 H 0.13 6.08 4.48 -2.91 -0.01 6.06 16 Total: -1.00 -57.16 282.82 4.06 -53.09 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.29 Total: 27.50 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 3.21 Total: -38.72 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.28 Total: -81.48 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.75 Total: -3.14 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.68 Total: 42.76 kcal Total: -57.16 4.06 -53.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245458087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.288 kcal (2) G-P(sol) polarization free energy of solvation -57.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds