Wall clock time and date at job start Mon Mar 30 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38474 * 120.10490 * 2 1 4 4 N 1.39844 * 120.01014 * 359.97438 * 3 2 1 5 5 C 1.39287 * 119.98485 * 180.29508 * 3 2 1 6 6 F 1.35104 * 119.90434 * 179.70123 * 5 3 2 7 7 C 1.38489 * 120.19439 * 359.71867 * 5 3 2 8 8 C 1.37914 * 120.20290 * 0.02562 * 7 5 3 9 9 C 1.39646 * 120.09693 * 179.73701 * 2 1 3 10 10 C 1.47760 * 120.09260 * 359.97438 * 9 2 1 11 11 N 1.32609 * 119.99561 * 308.88976 * 10 9 2 12 12 C 1.31731 * 121.71678 * 179.97438 * 11 10 9 13 13 C 1.38878 * 121.51241 * 0.02562 * 12 11 10 14 14 C 1.36877 * 119.80289 * 359.97438 * 13 12 11 15 15 C 1.41128 * 118.39757 * 0.24972 * 14 13 12 16 16 C 1.40867 * 120.72172 * 179.75015 * 15 14 13 17 17 H 1.08001 * 120.00173 * 151.04778 * 16 15 14 18 18 C 1.40063 * 119.99964 * 331.04847 * 16 15 14 19 19 N 1.30782 * 119.99950 * 162.53383 * 18 16 15 20 20 Si 1.86800 * 119.99800 * 342.53941 * 18 16 15 21 21 H 1.48502 * 109.47435 * 90.41721 * 20 18 16 22 22 H 1.48500 * 109.47001 * 210.41805 * 20 18 16 23 23 H 1.48502 * 109.47083 * 330.41655 * 20 18 16 24 24 H 1.09001 * 109.47302 * 274.44417 * 1 2 3 25 25 H 1.08999 * 109.46788 * 34.44228 * 1 2 3 26 26 H 1.08996 * 109.47631 * 154.44176 * 1 2 3 27 27 H 0.96994 * 120.00590 * 180.30360 * 4 3 2 28 28 H 0.97001 * 119.99065 * 0.30520 * 4 3 2 29 29 H 1.08005 * 119.89850 * 179.97438 * 7 5 3 30 30 H 1.08005 * 119.99528 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.24333 * 180.02562 * 12 11 10 32 32 H 1.07991 * 120.09952 * 179.97438 * 13 12 11 33 33 H 1.07993 * 120.80156 * 179.97438 * 14 13 12 34 34 H 0.96995 * 119.99686 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 7 1.5048 2.4104 -0.0005 5 6 3.5944 1.1950 -0.0062 6 9 4.2704 2.3648 -0.0123 7 6 4.2884 -0.0034 -0.0065 8 6 3.6047 -1.2011 -0.0012 9 6 2.2073 -1.2082 0.0055 10 6 1.4727 -2.4902 0.0120 11 7 0.5178 -2.7027 0.9073 12 6 -0.1586 -3.8325 0.9435 13 6 0.0954 -4.8598 0.0442 14 6 1.0682 -4.7066 -0.9066 15 6 1.7924 -3.4957 -0.9368 16 6 2.8076 -3.2880 -1.8910 17 1 3.0304 -2.2883 -2.2336 18 6 3.5281 -4.3780 -2.3956 19 7 4.2149 -4.2523 -3.5014 20 14 3.5079 -6.0111 -1.4890 21 1 2.3889 -6.8452 -1.9965 22 1 4.7941 -6.7183 -1.7143 23 1 3.3245 -5.7682 -0.0355 24 1 -0.3634 0.0796 1.0246 25 1 -0.3633 0.8475 -0.5812 26 1 -0.3634 -0.9270 -0.4433 27 1 1.9913 3.2495 -0.0050 28 1 0.5348 2.4122 0.0036 29 1 5.3685 -0.0001 -0.0118 30 1 4.1493 -2.1338 -0.0019 31 1 -0.9285 -3.9628 1.6897 32 1 -0.4728 -5.7767 0.0948 33 1 1.2794 -5.4951 -1.6136 34 1 4.7135 -5.0073 -3.8510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245459129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:26 Heat of formation + Delta-G solvation = -0.523189 kcal Electronic energy + Delta-G solvation = -20412.709532 eV Core-core repulsion = 17223.949817 eV Total energy + Delta-G solvation = -3188.759715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.27705 -39.37227 -37.99689 -34.41627 -34.02577 -32.23076 -31.36001 -30.19896 -27.78371 -26.45296 -25.52080 -22.75278 -21.81829 -20.86305 -20.27147 -17.60296 -17.21186 -16.87163 -16.30942 -15.68476 -15.12054 -14.86587 -14.82746 -14.36509 -13.78304 -13.48868 -13.11640 -13.01318 -12.79196 -12.44196 -12.32150 -12.12943 -11.71744 -11.48083 -11.38357 -11.14125 -10.94317 -10.47982 -10.29951 -10.24704 -9.87792 -9.59501 -8.59741 -8.31852 -8.11339 -7.52386 -7.19255 -6.98740 -4.67679 1.63113 2.07977 2.40010 2.62456 2.94700 3.06201 3.15706 3.77365 4.13851 4.28073 4.41667 4.82283 5.25164 5.30247 5.43225 5.66360 5.78390 5.93223 6.03060 6.12280 6.17787 6.24238 6.28124 6.40189 6.59647 6.67201 6.73364 6.80788 6.92980 7.09670 7.23330 7.32701 7.44587 7.53040 7.71199 7.84789 8.01516 8.11517 8.33876 8.51111 9.32053 9.80791 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.007360 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.354838 B = 3803.227107 C = 4860.729344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.126 4.126 3 C 0.179 3.821 4 N -0.880 5.880 5 C -0.002 4.002 6 F -0.155 7.155 7 C -0.117 4.117 8 C -0.112 4.112 9 C 0.056 3.944 10 C 0.032 3.968 11 N -0.434 5.434 12 C -0.046 4.046 13 C -0.118 4.118 14 C -0.213 4.213 15 C 0.063 3.937 16 C -0.416 4.416 17 H 0.103 0.897 18 C 0.083 3.917 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.246 1.246 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.395 0.605 28 H 0.398 0.602 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 4.628 4.124 6.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.076 3.924 4 N -0.422 5.422 5 C -0.025 4.025 6 F -0.135 7.135 7 C -0.137 4.137 8 C -0.132 4.132 9 C 0.054 3.946 10 C -0.109 4.109 11 N -0.142 5.142 12 C -0.204 4.204 13 C -0.138 4.138 14 C -0.238 4.238 15 C 0.057 3.943 16 C -0.444 4.444 17 H 0.121 0.879 18 C -0.139 4.139 19 N -0.407 5.407 20 Si 0.738 3.262 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.169 1.169 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.223 0.777 28 H 0.227 0.773 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.535 5.191 4.493 7.318 hybrid contribution 0.227 -1.042 -0.537 1.194 sum -2.307 4.149 3.957 6.180 Atomic orbital electron populations 1.20446 0.90929 1.01795 1.01384 1.19296 0.95943 0.90015 1.07913 1.17324 0.89200 0.87118 0.98786 1.42267 1.08734 1.04654 1.86582 1.17116 0.87891 0.81468 1.16070 1.91356 1.80197 1.46611 1.95294 1.20715 0.99856 0.90720 1.02359 1.20959 0.93285 0.97346 1.01647 1.18099 0.91917 0.90309 0.94274 1.19326 0.99862 0.95108 0.96611 1.67136 1.04076 1.21760 1.21185 1.21672 1.04374 0.91374 1.03000 1.21356 0.97674 0.98661 0.96085 1.21201 1.00240 0.99878 1.02528 1.18410 0.93035 0.91250 0.91580 1.19548 1.12682 0.96735 1.15385 0.87885 1.26274 0.93363 1.00952 0.93361 1.69656 1.21532 1.34071 1.15449 0.86350 0.77037 0.80283 0.82575 1.19260 1.21374 1.16884 0.91678 0.93645 0.90897 0.77746 0.77280 0.85533 0.84765 0.85684 0.87891 0.87058 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 8.54 36.01 0.31 -1.21 16 2 C -0.13 -2.43 5.93 -104.01 -0.62 -3.04 16 3 C 0.18 3.15 6.74 -83.73 -0.56 2.59 16 4 N -0.88 -12.03 8.99 32.43 0.29 -11.74 16 5 C 0.00 -0.03 7.32 -39.10 -0.29 -0.32 16 6 F -0.16 -2.67 16.63 2.25 0.04 -2.63 16 7 C -0.12 -2.15 10.00 -39.61 -0.40 -2.55 16 8 C -0.11 -2.28 8.05 -39.14 -0.32 -2.59 16 9 C 0.06 1.19 5.04 -104.92 -0.53 0.66 16 10 C 0.03 0.73 5.35 -82.24 -0.44 0.29 16 11 N -0.43 -9.65 8.81 -9.17 -0.08 -9.73 16 12 C -0.05 -0.94 11.16 -17.36 -0.19 -1.13 16 13 C -0.12 -2.41 10.03 -39.84 -0.40 -2.81 16 14 C -0.21 -4.84 7.33 -38.98 -0.29 -5.13 16 15 C 0.06 1.50 5.14 -106.41 -0.55 0.96 16 16 C -0.42 -10.34 7.61 -37.90 -0.29 -10.63 16 17 H 0.10 2.73 6.95 -52.49 -0.36 2.36 16 18 C 0.08 1.99 5.43 -17.31 -0.09 1.89 16 19 N -0.79 -19.28 13.93 55.55 0.77 -18.50 16 20 Si 0.91 19.26 24.54 -169.99 -4.17 15.09 16 21 H -0.27 -5.45 6.45 56.52 0.36 -5.09 16 22 H -0.29 -5.84 7.11 56.52 0.40 -5.43 16 23 H -0.25 -5.39 7.01 56.52 0.40 -4.99 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.65 6.78 -51.93 -0.35 0.30 16 26 H 0.07 1.41 6.47 -51.93 -0.34 1.07 16 27 H 0.39 4.76 8.31 -40.82 -0.34 4.42 16 28 H 0.40 4.68 6.92 -40.82 -0.28 4.40 16 29 H 0.13 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.13 2.79 7.34 -52.48 -0.39 2.40 16 31 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 2.48 4.50 -52.49 -0.24 2.24 16 34 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -26.43 285.00 -6.67 -33.09 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -3.16 Total: 13.13 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -4.65 Total: -23.01 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.98 Total: -39.97 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.17 Total: 15.09 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.43 -6.67 -33.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245459129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.570 kcal (2) G-P(sol) polarization free energy of solvation -26.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds