Wall clock time and date at job start Mon Mar 30 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38474 * 120.10490 * 2 1 4 4 N 1.39844 * 120.01014 * 359.97438 * 3 2 1 5 5 C 1.39287 * 119.98485 * 180.29508 * 3 2 1 6 6 F 1.35104 * 119.90434 * 179.70123 * 5 3 2 7 7 C 1.38489 * 120.19439 * 359.71867 * 5 3 2 8 8 C 1.37914 * 120.20290 * 0.02562 * 7 5 3 9 9 C 1.39646 * 120.09693 * 179.73701 * 2 1 3 10 10 C 1.47760 * 120.09260 * 359.97438 * 9 2 1 11 11 N 1.32609 * 119.99561 * 308.88976 * 10 9 2 12 12 C 1.31731 * 121.71678 * 179.97438 * 11 10 9 13 13 C 1.38878 * 121.51241 * 0.02562 * 12 11 10 14 14 C 1.36877 * 119.80289 * 359.97438 * 13 12 11 15 15 C 1.41128 * 118.39757 * 0.24972 * 14 13 12 16 16 C 1.40867 * 120.72172 * 179.75015 * 15 14 13 17 17 H 1.08001 * 120.00173 * 151.04778 * 16 15 14 18 18 C 1.40063 * 119.99964 * 331.04847 * 16 15 14 19 19 N 1.30782 * 119.99950 * 162.53383 * 18 16 15 20 20 Si 1.86800 * 119.99800 * 342.53941 * 18 16 15 21 21 H 1.48502 * 109.47435 * 90.41721 * 20 18 16 22 22 H 1.48500 * 109.47001 * 210.41805 * 20 18 16 23 23 H 1.48502 * 109.47083 * 330.41655 * 20 18 16 24 24 H 1.09001 * 109.47302 * 274.44417 * 1 2 3 25 25 H 1.08999 * 109.46788 * 34.44228 * 1 2 3 26 26 H 1.08996 * 109.47631 * 154.44176 * 1 2 3 27 27 H 0.96994 * 120.00590 * 180.30360 * 4 3 2 28 28 H 0.97001 * 119.99065 * 0.30520 * 4 3 2 29 29 H 1.08005 * 119.89850 * 179.97438 * 7 5 3 30 30 H 1.08005 * 119.99528 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.24333 * 180.02562 * 12 11 10 32 32 H 1.07991 * 120.09952 * 179.97438 * 13 12 11 33 33 H 1.07993 * 120.80156 * 179.97438 * 14 13 12 34 34 H 0.96995 * 119.99686 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 7 1.5048 2.4104 -0.0005 5 6 3.5944 1.1950 -0.0062 6 9 4.2704 2.3648 -0.0123 7 6 4.2884 -0.0034 -0.0065 8 6 3.6047 -1.2011 -0.0012 9 6 2.2073 -1.2082 0.0055 10 6 1.4727 -2.4902 0.0120 11 7 0.5178 -2.7027 0.9073 12 6 -0.1586 -3.8325 0.9435 13 6 0.0954 -4.8598 0.0442 14 6 1.0682 -4.7066 -0.9066 15 6 1.7924 -3.4957 -0.9368 16 6 2.8076 -3.2880 -1.8910 17 1 3.0304 -2.2883 -2.2336 18 6 3.5281 -4.3780 -2.3956 19 7 4.2149 -4.2523 -3.5014 20 14 3.5079 -6.0111 -1.4890 21 1 2.3889 -6.8452 -1.9965 22 1 4.7941 -6.7183 -1.7143 23 1 3.3245 -5.7682 -0.0355 24 1 -0.3634 0.0796 1.0246 25 1 -0.3633 0.8475 -0.5812 26 1 -0.3634 -0.9270 -0.4433 27 1 1.9913 3.2495 -0.0050 28 1 0.5348 2.4122 0.0036 29 1 5.3685 -0.0001 -0.0118 30 1 4.1493 -2.1338 -0.0019 31 1 -0.9285 -3.9628 1.6897 32 1 -0.4728 -5.7767 0.0948 33 1 1.2794 -5.4951 -1.6136 34 1 4.7135 -5.0073 -3.8510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245459129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:25 Heat of formation + Delta-G solvation = -15.930324 kcal Electronic energy + Delta-G solvation = -20413.377636 eV Core-core repulsion = 17223.949817 eV Total energy + Delta-G solvation = -3189.427818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.69086 -40.96870 -39.55826 -36.00767 -35.57673 -33.76837 -33.09909 -31.71863 -29.28689 -27.92618 -27.21754 -24.36838 -23.50915 -22.34111 -21.84658 -19.40409 -18.59509 -18.33104 -17.78634 -17.32458 -16.58922 -16.41346 -16.36464 -15.82070 -15.39477 -15.13892 -14.68126 -14.42885 -14.29562 -14.06894 -13.93571 -13.74589 -13.30654 -13.05559 -12.83285 -12.68678 -12.62244 -12.00414 -11.88476 -11.82764 -11.45218 -11.34449 -10.28407 -9.99351 -9.80687 -9.10382 -8.96825 -8.35878 -6.50638 0.06472 0.58879 0.71970 0.92601 1.23898 1.38165 1.46133 2.05981 2.61409 2.79415 2.91094 3.38549 3.53439 3.74139 3.96509 4.22059 4.28489 4.35668 4.47984 4.59934 4.70579 4.75472 4.81504 4.89294 5.00301 5.06339 5.18497 5.30557 5.37223 5.52871 5.58746 5.69134 5.91838 5.96541 5.98106 6.26708 6.51417 6.58982 6.68417 6.95717 7.60537 8.08694 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.007360 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.354838 B = 3803.227107 C = 4860.729344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.138 4.138 3 C 0.187 3.813 4 N -0.862 5.862 5 C -0.007 4.007 6 F -0.148 7.148 7 C -0.116 4.116 8 C -0.130 4.130 9 C 0.029 3.971 10 C 0.025 3.975 11 N -0.447 5.447 12 C -0.036 4.036 13 C -0.117 4.117 14 C -0.226 4.226 15 C 0.044 3.956 16 C -0.440 4.440 17 H 0.070 0.930 18 C 0.053 3.947 19 N -0.825 5.825 20 Si 0.959 3.041 21 H -0.251 1.251 22 H -0.275 1.275 23 H -0.260 1.260 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.406 0.594 28 H 0.410 0.590 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 4.839 5.431 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.081 3.919 4 N -0.405 5.405 5 C -0.031 4.031 6 F -0.127 7.127 7 C -0.135 4.135 8 C -0.151 4.151 9 C 0.027 3.973 10 C -0.114 4.114 11 N -0.154 5.154 12 C -0.195 4.195 13 C -0.137 4.137 14 C -0.252 4.252 15 C 0.039 3.961 16 C -0.468 4.468 17 H 0.088 0.912 18 C -0.165 4.165 19 N -0.449 5.449 20 Si 0.783 3.217 21 H -0.177 1.177 22 H -0.201 1.201 23 H -0.184 1.184 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.236 0.764 28 H 0.241 0.759 29 H 0.164 0.836 30 H 0.136 0.864 31 H 0.180 0.820 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.115 5.444 5.792 8.951 hybrid contribution 0.570 -0.969 -0.808 1.384 sum -3.545 4.475 4.984 7.579 Atomic orbital electron populations 1.20395 0.89468 1.01695 1.02177 1.19485 0.97070 0.89803 1.08014 1.17319 0.89173 0.87953 0.97418 1.42219 1.09429 1.03766 1.85098 1.17165 0.88323 0.81575 1.16064 1.91374 1.80091 1.45977 1.95224 1.20878 1.00904 0.90272 1.01428 1.20865 0.93311 0.97524 1.03354 1.18269 0.92368 0.90776 0.95888 1.19608 0.99922 0.95619 0.96286 1.67243 1.04355 1.22737 1.21073 1.22427 1.03754 0.90497 1.02862 1.21765 0.96914 1.00195 0.94822 1.21406 1.00850 0.99472 1.03439 1.18609 0.93205 0.92491 0.91789 1.19334 1.14579 0.95654 1.17255 0.91179 1.26813 0.92851 1.03167 0.93678 1.69675 1.23223 1.35328 1.16695 0.85624 0.77997 0.77591 0.80505 1.17674 1.20121 1.18409 0.90753 0.90818 0.93388 0.76432 0.75865 0.83628 0.86437 0.82035 0.83881 0.86828 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.64 8.54 71.24 0.61 -2.03 16 2 C -0.14 -5.23 5.93 -19.47 -0.12 -5.34 16 3 C 0.19 6.31 6.74 38.17 0.26 6.56 16 4 N -0.86 -21.20 8.99 -51.30 -0.46 -21.66 16 5 C -0.01 -0.25 7.32 22.58 0.17 -0.09 16 6 F -0.15 -4.79 16.63 44.97 0.75 -4.05 16 7 C -0.12 -4.28 10.00 22.25 0.22 -4.06 16 8 C -0.13 -5.50 8.05 22.56 0.18 -5.32 16 9 C 0.03 1.25 5.04 -20.06 -0.10 1.15 16 10 C 0.03 1.17 5.35 42.45 0.23 1.40 16 11 N -0.45 -19.32 8.81 -182.94 -1.61 -20.93 16 12 C -0.04 -1.40 11.16 84.86 0.95 -0.45 16 13 C -0.12 -4.48 10.03 22.10 0.22 -4.25 16 14 C -0.23 -10.07 7.33 22.66 0.17 -9.91 16 15 C 0.04 2.15 5.14 -21.02 -0.11 2.05 16 16 C -0.44 -22.95 7.61 23.36 0.18 -22.77 16 17 H 0.07 4.00 6.95 -2.91 -0.02 3.98 16 18 C 0.05 2.63 5.43 85.29 0.46 3.09 16 19 N -0.83 -42.11 13.93 21.85 0.30 -41.80 16 20 Si 0.96 39.86 24.54 68.60 1.68 41.54 16 21 H -0.25 -9.74 6.45 99.48 0.64 -9.10 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.26 -11.28 7.01 99.48 0.70 -10.58 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.07 1.93 6.78 -2.39 -0.02 1.91 16 26 H 0.05 1.81 6.47 -2.39 -0.02 1.80 16 27 H 0.41 8.56 8.31 -92.71 -0.77 7.79 16 28 H 0.41 8.30 6.92 -92.71 -0.64 7.65 16 29 H 0.15 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.12 5.25 7.34 -2.91 -0.02 5.23 16 31 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.11 4.94 4.50 -2.91 -0.01 4.92 16 34 H 0.30 13.61 8.29 -92.71 -0.77 12.84 16 Total: -1.00 -58.05 285.00 3.67 -54.38 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.31 Total: 32.48 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.31 Total: -39.97 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.77 Total: -84.39 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.75 Total: -4.05 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.68 Total: 41.54 kcal Total: -58.05 3.67 -54.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245459129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.452 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds