Wall clock time and date at job start Mon Mar 30 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38616 * 120.08365 * 2 1 4 4 N 1.39865 * 120.02485 * 0.02562 * 3 2 1 5 5 C 1.39162 * 119.95713 * 180.29687 * 3 2 1 6 6 F 1.35097 * 119.93689 * 179.72590 * 5 3 2 7 7 C 1.38371 * 120.12832 * 359.74692 * 5 3 2 8 8 C 1.38067 * 120.17267 * 359.97438 * 7 5 3 9 9 C 1.39257 * 120.08779 * 179.77249 * 2 1 3 10 10 C 1.48405 * 120.06249 * 359.97136 * 9 2 1 11 11 C 1.39708 * 120.41421 * 309.72815 * 10 9 2 12 12 N 1.31918 * 121.15243 * 179.72132 * 11 10 9 13 13 C 1.31523 * 122.11959 * 0.27794 * 12 11 10 14 14 C 1.40774 * 120.66476 * 0.02562 * 13 12 11 15 15 C 1.41438 * 120.60186 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00117 * 335.71164 * 15 14 13 17 17 C 1.39936 * 119.99772 * 155.71795 * 15 14 13 18 18 N 1.30830 * 120.00243 * 343.63708 * 17 15 14 19 19 Si 1.86797 * 119.99856 * 163.63433 * 17 15 14 20 20 H 1.48508 * 109.47007 * 60.00100 * 19 17 15 21 21 H 1.48504 * 109.47112 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47653 * 299.99827 * 19 17 15 23 23 C 1.39143 * 120.40730 * 130.00503 * 10 9 2 24 24 H 1.09001 * 109.46668 * 270.22868 * 1 2 3 25 25 H 1.08995 * 109.47080 * 30.22858 * 1 2 3 26 26 H 1.08997 * 109.46430 * 150.22970 * 1 2 3 27 27 H 0.96994 * 119.99611 * 180.29496 * 4 3 2 28 28 H 0.97001 * 119.99464 * 0.29786 * 4 3 2 29 29 H 1.07998 * 119.91093 * 179.97438 * 7 5 3 30 30 H 1.08001 * 119.98025 * 179.97438 * 8 7 5 31 31 H 1.08005 * 119.42746 * 0.02562 * 11 10 9 32 32 H 1.07992 * 119.66496 * 180.02562 * 13 12 11 33 33 H 0.97000 * 120.00014 * 180.02562 * 18 17 15 34 34 H 1.07994 * 120.95724 * 359.96478 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2019 1.1994 0.0000 4 7 1.5049 2.4120 0.0005 5 6 3.5935 1.1964 -0.0062 6 9 4.2703 2.3656 -0.0118 7 6 4.2854 -0.0019 -0.0072 8 6 3.5987 -1.1997 -0.0014 9 6 2.2052 -1.2049 0.0048 10 6 1.4665 -2.4921 0.0105 11 6 0.4470 -2.7183 0.9386 12 7 -0.2226 -3.8548 0.9532 13 6 0.0341 -4.8287 0.1073 14 6 1.0487 -4.6916 -0.8589 15 6 1.3233 -5.7395 -1.7683 16 1 1.0674 -6.7572 -1.5127 17 6 1.9266 -5.4577 -2.9991 18 7 1.9476 -4.2303 -3.4515 19 14 2.7020 -6.8340 -3.9960 20 1 1.6689 -7.8483 -4.3267 21 1 3.2684 -6.2776 -5.2510 22 1 3.7845 -7.4703 -3.2033 23 6 1.7847 -3.4907 -0.9046 24 1 -0.3633 0.0041 1.0277 25 1 -0.3633 0.8879 -0.5174 26 1 -0.3632 -0.8920 -0.5103 27 1 1.9915 3.2511 -0.0038 28 1 0.5349 2.4138 0.0053 29 1 5.3654 -0.0002 -0.0124 30 1 4.1419 -2.1332 -0.0025 31 1 0.1994 -1.9474 1.6534 32 1 -0.5392 -5.7426 0.1545 33 1 2.3655 -4.0350 -4.3048 34 1 2.5701 -3.3480 -1.6320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245461178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:27 Heat of formation + Delta-G solvation = -22.591222 kcal Electronic energy + Delta-G solvation = -19971.449817 eV Core-core repulsion = 16781.733160 eV Total energy + Delta-G solvation = -3189.716656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75489 -40.92438 -39.58448 -35.98463 -35.79828 -34.00515 -32.39022 -31.44784 -29.06202 -27.89746 -27.41686 -24.38278 -23.42773 -22.45736 -21.81040 -19.28785 -18.51956 -18.10601 -17.56823 -17.20698 -16.94718 -16.59673 -16.22421 -15.99859 -15.53502 -14.83953 -14.61607 -14.41633 -14.23184 -13.91643 -13.69497 -13.32487 -13.24231 -13.18637 -12.91877 -12.80599 -12.55597 -12.20306 -12.03575 -11.78693 -11.56781 -11.18577 -10.23251 -10.06259 -9.64673 -9.08847 -8.68053 -8.43628 -6.44017 0.01061 0.47350 0.88578 1.09095 1.40572 1.51364 1.55610 2.19306 2.64660 2.76920 2.85983 3.30694 3.68615 3.77583 3.91498 4.10371 4.21916 4.28615 4.61309 4.63060 4.71562 4.79412 4.83152 4.92845 5.04428 5.09576 5.19715 5.26764 5.31324 5.40338 5.63243 5.85097 5.86607 5.94331 6.03892 6.44221 6.49846 6.77127 6.78574 6.89345 7.70517 8.25241 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.005522 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.978152 B = 5069.231897 C = 5894.746845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.138 4.138 3 C 0.194 3.806 4 N -0.861 5.861 5 C -0.002 4.002 6 F -0.146 7.146 7 C -0.104 4.104 8 C -0.148 4.148 9 C 0.001 3.999 10 C -0.082 4.082 11 C -0.019 4.019 12 N -0.480 5.480 13 C -0.038 4.038 14 C 0.038 3.962 15 C -0.481 4.481 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.818 5.818 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.259 1.259 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.407 0.593 28 H 0.411 0.589 29 H 0.154 0.846 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.291 0.709 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 10.060 2.121 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C 0.087 3.913 4 N -0.404 5.404 5 C -0.026 4.026 6 F -0.125 7.125 7 C -0.123 4.123 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.084 4.084 11 C -0.177 4.177 12 N -0.187 5.187 13 C -0.198 4.198 14 C 0.034 3.966 15 C -0.510 4.510 16 H 0.104 0.896 17 C -0.179 4.179 18 N -0.443 5.443 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.158 4.158 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.237 0.763 28 H 0.243 0.757 29 H 0.172 0.828 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.309 10.135 2.531 10.698 hybrid contribution 0.892 -0.118 -1.200 1.500 sum 3.201 10.017 1.330 10.599 Atomic orbital electron populations 1.20646 0.89680 1.02417 1.02767 1.19342 0.96872 0.89787 1.08263 1.17361 0.89329 0.87861 0.96727 1.42318 1.09629 1.03894 1.84539 1.17156 0.88233 0.81843 1.15405 1.91397 1.79953 1.45993 1.95128 1.20953 1.01259 0.89933 1.00167 1.20894 0.92879 0.97999 1.05039 1.18659 0.93124 0.91483 0.96844 1.19571 0.97885 0.93495 0.97428 1.22174 0.98066 0.95781 1.01715 1.66973 1.26882 1.01354 1.23495 1.22683 0.99995 0.98550 0.98620 1.18778 0.90820 0.93941 0.93081 1.19805 1.35755 0.95235 1.00235 0.89576 1.26794 0.93526 0.99029 0.98546 1.69829 1.32772 1.22399 1.19286 0.85200 0.79207 0.77989 0.77099 1.18191 1.19338 1.18330 1.21772 1.00776 0.94015 0.99248 0.90051 0.90195 0.93211 0.76269 0.75735 0.82791 0.85847 0.83829 0.84829 0.89801 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 8.01 71.24 0.57 -2.32 16 2 C -0.14 -4.54 5.89 -19.53 -0.12 -4.65 16 3 C 0.19 5.56 6.74 38.17 0.26 5.82 16 4 N -0.86 -17.79 8.99 -51.28 -0.46 -18.25 16 5 C 0.00 -0.07 7.31 22.52 0.16 0.09 16 6 F -0.15 -4.00 16.63 44.97 0.75 -3.25 16 7 C -0.10 -3.11 10.00 22.26 0.22 -2.89 16 8 C -0.15 -5.21 9.52 22.50 0.21 -5.00 16 9 C 0.00 0.02 5.49 -20.05 -0.11 -0.09 16 10 C -0.08 -3.68 4.71 -20.00 -0.09 -3.78 16 11 C -0.02 -0.86 9.09 85.04 0.77 -0.08 16 12 N -0.48 -23.25 10.32 -192.77 -1.99 -25.24 16 13 C -0.04 -1.93 10.96 85.36 0.94 -1.00 16 14 C 0.04 2.00 5.59 -21.21 -0.12 1.88 16 15 C -0.48 -24.70 9.09 23.47 0.21 -24.48 16 16 H 0.09 4.19 7.90 -2.91 -0.02 4.17 16 17 C 0.04 1.79 5.20 85.25 0.44 2.23 16 18 N -0.82 -40.93 10.89 21.82 0.24 -40.69 16 19 Si 0.98 36.27 29.59 68.60 2.03 38.30 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 23 C -0.13 -6.72 8.28 23.14 0.19 -6.53 16 24 H 0.08 2.13 7.51 -2.39 -0.02 2.11 16 25 H 0.08 1.84 6.56 -2.39 -0.02 1.82 16 26 H 0.05 1.79 6.46 -2.39 -0.02 1.78 16 27 H 0.41 7.06 8.31 -92.71 -0.77 6.29 16 28 H 0.41 6.91 6.83 -92.71 -0.63 6.27 16 29 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.12 4.37 8.04 -2.91 -0.02 4.34 16 31 H 0.14 5.62 6.87 -2.91 -0.02 5.60 16 32 H 0.13 6.27 8.06 -2.91 -0.02 6.24 16 33 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 34 H 0.12 6.22 6.19 -2.91 -0.02 6.20 16 Total: -1.00 -58.68 292.70 3.88 -54.80 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.23 Total: 35.13 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.55 Total: -40.79 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.21 Total: -84.19 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.75 Total: -3.25 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Total: -58.68 3.88 -54.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245461178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.212 kcal (2) G-P(sol) polarization free energy of solvation -58.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds