Wall clock time and date at job start Mon Mar 30 2020 01:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38478 * 120.10104 * 2 1 4 4 N 1.39840 * 120.00490 * 359.97438 * 3 2 1 5 5 C 1.39289 * 119.99263 * 179.97438 * 3 2 1 6 6 F 1.35099 * 119.90900 * 180.02562 * 5 3 2 7 7 C 1.38489 * 120.18664 * 359.97438 * 5 3 2 8 8 C 1.37935 * 120.20452 * 359.78828 * 7 5 3 9 9 C 1.39623 * 120.09929 * 179.97438 * 2 1 3 10 10 C 1.47793 * 120.09798 * 0.02562 * 9 2 1 11 11 C 1.39346 * 120.78623 * 245.00047 * 10 9 2 12 12 N 1.31654 * 120.65716 * 179.69997 * 11 10 9 13 13 C 1.32232 * 122.50892 * 0.02562 * 12 11 10 14 14 C 1.36457 * 121.51453 * 0.02562 * 13 12 11 15 15 C 1.41133 * 119.11262 * 359.93198 * 14 13 12 16 16 C 1.40896 * 121.11171 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00116 * 203.57624 * 16 15 14 18 18 C 1.40166 * 119.99839 * 23.57380 * 16 15 14 19 19 N 1.30687 * 119.99894 * 17.03921 * 18 16 15 20 20 Si 1.86799 * 119.99886 * 197.03628 * 18 16 15 21 21 H 1.48493 * 109.47441 * 90.00113 * 20 18 16 22 22 H 1.48507 * 109.47149 * 210.00485 * 20 18 16 23 23 H 1.48502 * 109.47188 * 330.00091 * 20 18 16 24 24 H 1.08994 * 109.47076 * 270.02179 * 1 2 3 25 25 H 1.08997 * 109.46971 * 30.02403 * 1 2 3 26 26 H 1.09000 * 109.46992 * 150.02548 * 1 2 3 27 27 H 0.97002 * 119.99824 * 0.02562 * 4 3 2 28 28 H 0.97000 * 120.00469 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.90505 * 180.02562 * 7 5 3 30 30 H 1.07994 * 119.99864 * 180.23064 * 8 7 5 31 31 H 1.08002 * 119.67172 * 359.71959 * 11 10 9 32 32 H 1.07996 * 119.24248 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.44299 * 179.97438 * 14 13 12 34 34 H 0.97006 * 119.99729 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1980 0.0000 4 7 1.5046 2.4104 -0.0005 5 6 3.5944 1.1954 0.0005 6 9 4.2703 2.3652 0.0011 7 6 4.2885 -0.0030 0.0016 8 6 3.6047 -1.2009 0.0066 9 6 2.2072 -1.2080 0.0005 10 6 1.4727 -2.4904 0.0005 11 6 1.5568 -3.3605 1.0857 12 7 0.8967 -4.4996 1.0855 13 6 0.1311 -4.8772 0.0756 14 6 -0.0190 -4.0993 -1.0354 15 6 0.6585 -2.8631 -1.1047 16 6 0.5332 -2.0264 -2.2314 17 1 1.3051 -1.3056 -2.4573 18 6 -0.5933 -2.1296 -3.0591 19 7 -1.6662 -2.7397 -2.6294 20 14 -0.5609 -1.3950 -4.7763 21 1 -0.0676 -2.4111 -5.7402 22 1 -1.9321 -0.9731 -5.1601 23 1 0.3425 -0.2166 -4.7936 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 0.5346 2.4121 -0.0005 28 1 1.9911 3.2496 -0.0002 29 1 5.3685 0.0003 0.0024 30 1 4.1493 -2.1335 0.0111 31 1 2.1693 -3.0977 1.9355 32 1 -0.3865 -5.8234 0.1310 33 1 -0.6483 -4.4248 -1.8504 34 1 -2.4459 -2.8107 -3.2021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245462480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:35 Heat of formation + Delta-G solvation = -5.140247 kcal Electronic energy + Delta-G solvation = -20524.625717 eV Core-core repulsion = 17335.665792 eV Total energy + Delta-G solvation = -3188.959925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.31906 -39.26475 -37.85454 -34.37058 -34.31063 -32.28357 -30.29051 -29.76952 -27.64365 -26.53141 -25.60638 -22.60704 -21.57114 -20.91071 -20.09687 -17.67397 -17.18415 -16.65966 -16.00478 -15.61945 -15.13543 -14.75559 -14.52520 -14.38683 -14.08116 -13.12967 -12.91310 -12.85593 -12.74871 -12.50106 -12.11435 -11.79330 -11.52615 -11.41265 -11.36796 -11.11028 -10.95977 -10.51510 -10.40041 -10.16784 -9.80981 -9.44589 -8.28123 -8.06916 -7.81914 -7.44093 -7.06329 -6.94722 -4.70020 1.74946 2.03323 2.63682 2.76309 2.95467 2.99408 3.17687 3.75504 4.16100 4.27719 4.52540 4.80932 5.30100 5.54583 5.58106 5.74492 5.82552 5.88121 6.19820 6.26913 6.27687 6.40872 6.58185 6.68990 6.76799 6.80904 6.92572 7.02980 7.17049 7.23422 7.32697 7.42660 7.47959 7.77568 7.84702 7.99812 8.03789 8.35473 8.59343 8.63543 9.57140 9.88573 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.008326 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.303026 B = 3362.103904 C = 4537.242504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C 0.183 3.817 4 N -0.879 5.879 5 C -0.009 4.009 6 F -0.157 7.157 7 C -0.116 4.116 8 C -0.148 4.148 9 C 0.059 3.941 10 C -0.234 4.234 11 C 0.130 3.870 12 N -0.578 5.578 13 C 0.082 3.918 14 C -0.211 4.211 15 C 0.146 3.854 16 C -0.434 4.434 17 H 0.086 0.914 18 C 0.079 3.921 19 N -0.775 5.775 20 Si 0.906 3.094 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.259 1.259 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.112 0.888 27 H 0.399 0.601 28 H 0.394 0.606 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 6.207 0.655 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C 0.079 3.921 4 N -0.421 5.421 5 C -0.032 4.032 6 F -0.136 7.136 7 C -0.135 4.135 8 C -0.168 4.168 9 C 0.057 3.943 10 C -0.240 4.240 11 C -0.028 4.028 12 N -0.293 5.293 13 C -0.066 4.066 14 C -0.233 4.233 15 C 0.138 3.862 16 C -0.464 4.464 17 H 0.104 0.896 18 C -0.142 4.142 19 N -0.400 5.400 20 Si 0.730 3.270 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.183 1.183 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.131 0.869 27 H 0.230 0.770 28 H 0.222 0.778 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.768 5.544 1.308 6.333 hybrid contribution -0.192 1.505 -1.622 2.221 sum 2.576 7.049 -0.314 7.512 Atomic orbital electron populations 1.20838 0.90618 1.04539 1.00970 1.19421 0.96321 0.89759 1.06303 1.17473 0.89164 0.87410 0.98092 1.42337 1.08948 1.04634 1.86182 1.17099 0.87953 0.81424 1.16735 1.91352 1.80198 1.46654 1.95368 1.20666 0.99533 0.90915 1.02406 1.20955 0.93576 0.96731 1.05528 1.18394 0.91547 0.91892 0.92488 1.19418 1.10561 0.96057 0.97932 1.22060 0.95705 0.89582 0.95444 1.67325 1.13516 1.18371 1.30049 1.21712 0.95914 0.98294 0.90689 1.21923 1.05872 0.95553 0.99992 1.17665 0.87510 0.90800 0.90250 1.19550 1.04131 1.16716 1.06015 0.89642 1.26008 0.94506 0.93726 0.99979 1.69744 1.02209 1.31397 1.36610 0.86309 0.78661 0.80480 0.81547 1.18965 1.20070 1.18256 0.93028 0.93691 0.86946 0.77044 0.77838 0.85858 0.85917 0.86137 0.86531 0.85557 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.86 36.01 0.32 -1.84 16 2 C -0.11 -2.20 5.39 -104.02 -0.56 -2.76 16 3 C 0.18 3.22 6.74 -83.73 -0.56 2.66 16 4 N -0.88 -12.55 8.99 32.43 0.29 -12.25 16 5 C -0.01 -0.15 7.32 -39.10 -0.29 -0.44 16 6 F -0.16 -2.61 16.63 2.25 0.04 -2.57 16 7 C -0.12 -1.95 10.00 -39.60 -0.40 -2.34 16 8 C -0.15 -2.70 9.75 -39.13 -0.38 -3.08 16 9 C 0.06 1.19 4.48 -104.91 -0.47 0.72 16 10 C -0.23 -5.26 4.67 -104.04 -0.49 -5.75 16 11 C 0.13 2.90 10.92 -17.22 -0.19 2.71 16 12 N -0.58 -13.53 10.32 -13.36 -0.14 -13.67 16 13 C 0.08 1.88 11.09 -18.02 -0.20 1.68 16 14 C -0.21 -5.09 8.74 -39.13 -0.34 -5.43 16 15 C 0.15 3.51 4.56 -106.26 -0.48 3.02 16 16 C -0.43 -10.27 6.32 -37.85 -0.24 -10.51 16 17 H 0.09 2.06 7.16 -52.48 -0.38 1.68 16 18 C 0.08 1.78 5.20 -17.32 -0.09 1.69 16 19 N -0.78 -17.82 10.91 55.56 0.61 -17.21 16 20 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 22 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.75 6.54 -51.93 -0.34 0.41 16 26 H 0.11 2.52 4.33 -51.93 -0.22 2.30 16 27 H 0.40 5.16 6.82 -40.82 -0.28 4.88 16 28 H 0.39 4.90 8.31 -40.82 -0.34 4.56 16 29 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 30 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.13 3.09 6.18 -52.49 -0.32 2.76 16 34 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -25.70 289.79 -7.37 -33.06 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -3.13 Total: 15.64 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -4.37 Total: -19.67 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.76 Total: -43.13 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -25.70 -7.37 -33.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245462480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.924 kcal (2) G-P(sol) polarization free energy of solvation -25.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds