Wall clock time and date at job start Mon Mar 30 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38478 * 120.10104 * 2 1 4 4 N 1.39840 * 120.00490 * 359.97438 * 3 2 1 5 5 C 1.39289 * 119.99263 * 179.97438 * 3 2 1 6 6 F 1.35099 * 119.90900 * 180.02562 * 5 3 2 7 7 C 1.38489 * 120.18664 * 359.97438 * 5 3 2 8 8 C 1.37935 * 120.20452 * 359.78828 * 7 5 3 9 9 C 1.39623 * 120.09929 * 179.97438 * 2 1 3 10 10 C 1.47793 * 120.09798 * 0.02562 * 9 2 1 11 11 C 1.39346 * 120.78623 * 245.00047 * 10 9 2 12 12 N 1.31654 * 120.65716 * 179.69997 * 11 10 9 13 13 C 1.32232 * 122.50892 * 0.02562 * 12 11 10 14 14 C 1.36457 * 121.51453 * 0.02562 * 13 12 11 15 15 C 1.41133 * 119.11262 * 359.93198 * 14 13 12 16 16 C 1.40896 * 121.11171 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00116 * 203.57624 * 16 15 14 18 18 C 1.40166 * 119.99839 * 23.57380 * 16 15 14 19 19 N 1.30687 * 119.99894 * 17.03921 * 18 16 15 20 20 Si 1.86799 * 119.99886 * 197.03628 * 18 16 15 21 21 H 1.48493 * 109.47441 * 90.00113 * 20 18 16 22 22 H 1.48507 * 109.47149 * 210.00485 * 20 18 16 23 23 H 1.48502 * 109.47188 * 330.00091 * 20 18 16 24 24 H 1.08994 * 109.47076 * 270.02179 * 1 2 3 25 25 H 1.08997 * 109.46971 * 30.02403 * 1 2 3 26 26 H 1.09000 * 109.46992 * 150.02548 * 1 2 3 27 27 H 0.97002 * 119.99824 * 0.02562 * 4 3 2 28 28 H 0.97000 * 120.00469 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.90505 * 180.02562 * 7 5 3 30 30 H 1.07994 * 119.99864 * 180.23064 * 8 7 5 31 31 H 1.08002 * 119.67172 * 359.71959 * 11 10 9 32 32 H 1.07996 * 119.24248 * 179.97438 * 13 12 11 33 33 H 1.07998 * 120.44299 * 179.97438 * 14 13 12 34 34 H 0.97006 * 119.99729 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1980 0.0000 4 7 1.5046 2.4104 -0.0005 5 6 3.5944 1.1954 0.0005 6 9 4.2703 2.3652 0.0011 7 6 4.2885 -0.0030 0.0016 8 6 3.6047 -1.2009 0.0066 9 6 2.2072 -1.2080 0.0005 10 6 1.4727 -2.4904 0.0005 11 6 1.5568 -3.3605 1.0857 12 7 0.8967 -4.4996 1.0855 13 6 0.1311 -4.8772 0.0756 14 6 -0.0190 -4.0993 -1.0354 15 6 0.6585 -2.8631 -1.1047 16 6 0.5332 -2.0264 -2.2314 17 1 1.3051 -1.3056 -2.4573 18 6 -0.5933 -2.1296 -3.0591 19 7 -1.6662 -2.7397 -2.6294 20 14 -0.5609 -1.3950 -4.7763 21 1 -0.0676 -2.4111 -5.7402 22 1 -1.9321 -0.9731 -5.1601 23 1 0.3425 -0.2166 -4.7936 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 0.5346 2.4121 -0.0005 28 1 1.9911 3.2496 -0.0002 29 1 5.3685 0.0003 0.0024 30 1 4.1493 -2.1335 0.0111 31 1 2.1693 -3.0977 1.9355 32 1 -0.3865 -5.8234 0.1310 33 1 -0.6483 -4.4248 -1.8504 34 1 -2.4459 -2.8107 -3.2021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245462480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:34 Heat of formation + Delta-G solvation = -18.372152 kcal Electronic energy + Delta-G solvation = -20525.199495 eV Core-core repulsion = 17335.665792 eV Total energy + Delta-G solvation = -3189.533704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.65525 -40.82204 -39.45344 -36.09502 -35.66032 -33.82333 -32.01735 -31.32838 -29.16439 -28.07486 -27.23484 -24.20525 -23.31008 -22.32638 -21.65520 -19.42927 -18.50726 -18.00089 -17.53290 -17.23416 -16.51671 -16.30662 -16.11093 -15.94685 -15.56103 -14.61361 -14.45062 -14.40996 -14.30237 -14.06120 -13.74726 -13.38477 -13.14892 -12.99316 -12.84726 -12.64698 -12.58127 -11.97888 -11.90949 -11.62952 -11.42537 -11.13428 -9.94484 -9.86539 -9.55158 -9.04850 -8.68107 -8.34461 -6.48637 0.27859 0.63577 0.96951 1.02968 1.38910 1.49109 1.56052 2.16390 2.77065 2.84784 2.94601 3.43867 3.73520 3.99899 4.03557 4.18363 4.34301 4.45931 4.56977 4.76869 4.87987 4.91273 5.01553 5.05614 5.16905 5.24528 5.28932 5.42445 5.55397 5.60096 5.64713 5.89567 5.93458 6.11768 6.22837 6.53364 6.57188 6.82038 6.85909 6.94183 7.78164 8.20629 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.008326 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.303026 B = 3362.103904 C = 4537.242504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C 0.184 3.816 4 N -0.866 5.866 5 C -0.014 4.014 6 F -0.150 7.150 7 C -0.106 4.106 8 C -0.154 4.154 9 C 0.036 3.964 10 C -0.231 4.231 11 C 0.119 3.881 12 N -0.592 5.592 13 C 0.076 3.924 14 C -0.232 4.232 15 C 0.125 3.875 16 C -0.444 4.444 17 H 0.076 0.924 18 C 0.048 3.952 19 N -0.797 5.797 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.263 1.263 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.407 0.593 28 H 0.405 0.595 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 7.726 0.284 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.079 3.921 4 N -0.409 5.409 5 C -0.038 4.038 6 F -0.129 7.129 7 C -0.125 4.125 8 C -0.174 4.174 9 C 0.034 3.966 10 C -0.236 4.236 11 C -0.038 4.038 12 N -0.306 5.306 13 C -0.072 4.072 14 C -0.255 4.255 15 C 0.117 3.883 16 C -0.474 4.474 17 H 0.094 0.906 18 C -0.171 4.171 19 N -0.422 5.422 20 Si 0.789 3.211 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.186 1.186 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.238 0.762 28 H 0.235 0.765 29 H 0.171 0.829 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.558 7.089 0.955 7.989 hybrid contribution -0.416 1.102 -1.457 1.873 sum 3.142 8.191 -0.502 8.787 Atomic orbital electron populations 1.20701 0.90910 1.03748 1.00944 1.19411 0.96282 0.90234 1.07532 1.17487 0.89528 0.87821 0.97288 1.42309 1.09425 1.04118 1.85059 1.17221 0.88022 0.81922 1.16662 1.91370 1.79996 1.46255 1.95303 1.20928 1.01006 0.89983 1.00557 1.21032 0.92778 0.97829 1.05803 1.18442 0.92517 0.91300 0.94327 1.19625 1.09831 0.96918 0.97228 1.22432 0.95788 0.89394 0.96162 1.67374 1.14024 1.19069 1.30169 1.22005 0.95860 0.98971 0.90340 1.21924 1.06878 0.96279 1.00386 1.17955 0.88178 0.91030 0.91115 1.19528 1.04419 1.16793 1.06659 0.90609 1.26638 0.93806 0.93919 1.02737 1.69771 1.02738 1.31823 1.37855 0.85393 0.78887 0.79455 0.77365 1.18778 1.18958 1.18647 0.92674 0.91881 0.90268 0.76207 0.76527 0.82900 0.85124 0.84082 0.84522 0.86541 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.86 71.24 0.63 -3.40 16 2 C -0.13 -4.92 5.39 -19.47 -0.11 -5.02 16 3 C 0.18 6.14 6.74 38.17 0.26 6.40 16 4 N -0.87 -22.64 8.99 -51.30 -0.46 -23.10 16 5 C -0.01 -0.47 7.32 22.58 0.17 -0.31 16 6 F -0.15 -4.55 16.63 44.97 0.75 -3.80 16 7 C -0.11 -3.28 10.00 22.26 0.22 -3.06 16 8 C -0.15 -5.42 9.75 22.56 0.22 -5.20 16 9 C 0.04 1.44 4.48 -20.05 -0.09 1.35 16 10 C -0.23 -10.46 4.67 -19.49 -0.09 -10.56 16 11 C 0.12 5.30 10.92 84.99 0.93 6.23 16 12 N -0.59 -27.77 10.32 -196.19 -2.02 -29.80 16 13 C 0.08 3.57 11.09 84.22 0.93 4.50 16 14 C -0.23 -11.48 8.74 22.56 0.20 -11.28 16 15 C 0.13 6.15 4.56 -20.92 -0.10 6.06 16 16 C -0.44 -21.31 6.32 23.39 0.15 -21.16 16 17 H 0.08 3.70 7.16 -2.91 -0.02 3.68 16 18 C 0.05 2.18 5.20 85.33 0.44 2.63 16 19 N -0.80 -37.02 10.91 21.86 0.24 -36.78 16 20 Si 0.97 35.15 29.59 68.60 2.03 37.18 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.06 2.06 6.54 -2.39 -0.02 2.05 16 26 H 0.08 3.61 4.33 -2.39 -0.01 3.60 16 27 H 0.41 9.57 6.82 -92.71 -0.63 8.94 16 28 H 0.41 8.94 8.31 -92.71 -0.77 8.17 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.14 5.55 8.06 -2.91 -0.02 5.52 16 32 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 33 H 0.12 5.88 6.18 -2.91 -0.02 5.86 16 34 H 0.29 12.32 8.29 -92.70 -0.77 11.55 16 Total: -1.00 -54.31 289.79 4.07 -50.24 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.23 Total: 38.88 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.76 Total: -32.82 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.25 Total: -89.68 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.75 Total: -3.80 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Total: -54.31 4.07 -50.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245462480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.873 kcal (2) G-P(sol) polarization free energy of solvation -54.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds