Wall clock time and date at job start Mon Mar 30 2020 01:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38610 * 120.08674 * 2 1 4 4 N 1.39854 * 120.01920 * 359.96747 * 3 2 1 5 5 C 1.39164 * 119.95770 * 180.29597 * 3 2 1 6 6 F 1.35098 * 119.93381 * 179.67753 * 5 3 2 7 7 C 1.38389 * 120.13344 * 359.69224 * 5 3 2 8 8 C 1.38042 * 120.17242 * 0.02562 * 7 5 3 9 9 C 1.39280 * 120.08666 * 179.73532 * 2 1 3 10 10 C 1.48369 * 120.06772 * 0.02562 * 9 2 1 11 11 C 1.40042 * 120.82072 * 309.73007 * 10 9 2 12 12 C 1.38494 * 119.42001 * 179.97438 * 11 10 9 13 13 N 1.31487 * 121.14801 * 359.97438 * 12 11 10 14 14 C 1.33648 * 121.79797 * 0.02562 * 13 12 11 15 15 C 1.41421 * 119.78078 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00335 * 180.02562 * 15 14 13 17 17 C 1.40037 * 119.99975 * 359.72276 * 15 14 13 18 18 N 1.30744 * 120.00050 * 0.27903 * 17 15 14 19 19 Si 1.86803 * 120.00055 * 180.27341 * 17 15 14 20 20 H 1.48498 * 109.46646 * 60.00652 * 19 17 15 21 21 H 1.48497 * 109.46782 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47374 * 300.00619 * 19 17 15 23 23 C 1.39326 * 120.81928 * 129.97939 * 10 9 2 24 24 H 1.09003 * 109.47472 * 270.26211 * 1 2 3 25 25 H 1.09009 * 109.46845 * 30.26338 * 1 2 3 26 26 H 1.09004 * 109.47176 * 150.25581 * 1 2 3 27 27 H 0.97002 * 120.00280 * 180.32409 * 4 3 2 28 28 H 0.97011 * 120.00428 * 0.32659 * 4 3 2 29 29 H 1.07999 * 119.91450 * 180.02562 * 7 5 3 30 30 H 1.07999 * 119.98011 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.29168 * 359.96838 * 11 10 9 32 32 H 1.08005 * 119.42601 * 179.97438 * 12 11 10 33 33 H 0.96991 * 119.99866 * 179.97438 * 18 17 15 34 34 H 1.07998 * 120.58912 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2019 1.1993 0.0000 4 7 1.5048 2.4118 -0.0007 5 6 3.5935 1.1962 -0.0062 6 9 4.2702 2.3655 -0.0128 7 6 4.2856 -0.0022 -0.0060 8 6 3.5991 -1.1998 -0.0001 9 6 2.2052 -1.2051 0.0056 10 6 1.4669 -2.4920 0.0109 11 6 0.4427 -2.7278 0.9365 12 6 -0.2279 -3.9393 0.9152 13 7 0.0799 -4.8718 0.0408 14 6 1.0486 -4.6972 -0.8633 15 6 1.3447 -5.7292 -1.7838 16 1 2.1270 -5.5921 -2.5156 17 6 0.6278 -6.9315 -1.7422 18 7 -0.3190 -7.0977 -0.8559 19 14 1.0240 -8.2976 -2.9530 20 1 2.4380 -8.7171 -2.7805 21 1 0.1294 -9.4561 -2.7022 22 1 0.8192 -7.8055 -4.3390 23 6 1.7788 -3.4978 -0.9014 24 1 -0.3634 0.0047 1.0277 25 1 -0.3633 0.8877 -0.5180 26 1 -0.3634 -0.8923 -0.5099 27 1 1.9914 3.2510 -0.0054 28 1 0.5348 2.4137 0.0036 29 1 5.3655 -0.0005 -0.0104 30 1 4.1423 -2.1332 -0.0004 31 1 0.1781 -1.9714 1.6607 32 1 -1.0176 -4.1214 1.6292 33 1 -0.8158 -7.9302 -0.8274 34 1 2.5650 -3.3561 -1.6281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245464088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:32 Heat of formation + Delta-G solvation = -11.984610 kcal Electronic energy + Delta-G solvation = -19715.606512 eV Core-core repulsion = 16526.349793 eV Total energy + Delta-G solvation = -3189.256719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.76754 -40.86391 -39.51227 -35.97131 -35.41404 -33.98437 -32.09002 -31.47820 -29.25192 -27.99961 -27.40044 -24.40889 -23.17712 -22.44006 -21.98224 -19.30981 -18.58940 -18.02762 -17.60838 -16.96126 -16.60857 -16.28036 -16.10754 -15.99410 -15.58905 -14.80985 -14.67324 -14.48994 -14.19398 -14.12257 -13.87783 -13.28201 -13.00509 -12.94016 -12.78956 -12.68012 -12.40253 -12.21108 -11.99921 -11.83419 -11.55803 -11.16504 -10.21544 -9.55033 -9.46700 -9.23573 -8.46153 -8.26531 -6.49196 0.02449 0.46391 0.93552 1.21712 1.42123 1.54120 1.56739 2.24713 2.68011 2.82599 2.90117 3.29334 3.74303 3.86335 3.97711 4.14040 4.24957 4.27310 4.58503 4.68305 4.72091 4.82607 4.88810 4.92311 5.00357 5.06480 5.23182 5.28860 5.33805 5.51687 5.59567 5.66369 5.84072 5.95846 6.16342 6.30611 6.43255 6.75246 6.87791 6.98160 8.22186 8.47767 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.004350 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.539648 B = 6435.414110 C = 6971.216204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.134 4.134 3 C 0.192 3.808 4 N -0.861 5.861 5 C -0.001 4.001 6 F -0.146 7.146 7 C -0.104 4.104 8 C -0.145 4.145 9 C -0.009 4.009 10 C 0.010 3.990 11 C -0.283 4.283 12 C 0.103 3.897 13 N -0.519 5.519 14 C 0.225 3.775 15 C -0.472 4.472 16 H 0.087 0.913 17 C 0.026 3.974 18 N -0.757 5.757 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.269 4.269 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.407 0.593 28 H 0.411 0.589 29 H 0.156 0.844 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.278 0.722 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 13.568 1.209 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.085 3.915 4 N -0.404 5.404 5 C -0.025 4.025 6 F -0.125 7.125 7 C -0.123 4.123 8 C -0.165 4.165 9 C -0.010 4.010 10 C 0.003 3.997 11 C -0.306 4.306 12 C -0.060 4.060 13 N -0.233 5.233 14 C 0.100 3.900 15 C -0.503 4.503 16 H 0.105 0.895 17 C -0.195 4.195 18 N -0.379 5.379 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.292 4.292 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.237 0.763 28 H 0.243 0.757 29 H 0.173 0.827 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.551 12.652 1.275 12.970 hybrid contribution 0.517 0.489 -0.368 0.801 sum 3.067 13.141 0.907 13.525 Atomic orbital electron populations 1.20664 0.89550 1.02576 1.02823 1.19357 0.96972 0.89697 1.07898 1.17380 0.89352 0.87892 0.96850 1.42334 1.09662 1.03929 1.84485 1.17205 0.88243 0.81904 1.15116 1.91403 1.79950 1.46020 1.95085 1.20972 1.01341 0.89873 1.00150 1.20924 0.92748 0.98143 1.04721 1.18726 0.93228 0.91450 0.97554 1.18763 0.94465 0.91763 0.94685 1.21583 1.03415 1.00241 1.05341 1.22902 0.97286 0.90015 0.95829 1.68660 1.17724 1.30932 1.05981 1.18932 0.88398 0.91635 0.91002 1.19943 1.17346 0.98607 1.14414 0.89523 1.26948 0.93542 1.01639 0.97412 1.70219 1.14402 1.24807 1.28478 0.85232 0.79384 0.76457 0.78444 1.18333 1.19249 1.18376 1.21904 1.06220 0.96145 1.04918 0.90211 0.90247 0.92733 0.76269 0.75713 0.82672 0.85463 0.85781 0.84380 0.91089 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 8.03 71.24 0.57 -2.10 16 2 C -0.13 -4.09 5.90 -19.52 -0.12 -4.21 16 3 C 0.19 5.09 6.74 38.17 0.26 5.35 16 4 N -0.86 -16.25 8.99 -51.29 -0.46 -16.71 16 5 C 0.00 -0.02 7.31 22.53 0.16 0.14 16 6 F -0.15 -3.73 16.63 44.97 0.75 -2.98 16 7 C -0.10 -2.86 10.00 22.26 0.22 -2.64 16 8 C -0.15 -4.71 9.53 22.50 0.21 -4.50 16 9 C -0.01 -0.31 5.51 -20.05 -0.11 -0.42 16 10 C 0.01 0.42 4.72 -19.88 -0.09 0.32 16 11 C -0.28 -11.96 8.04 22.77 0.18 -11.78 16 12 C 0.10 4.91 11.17 84.81 0.95 5.86 16 13 N -0.52 -28.97 7.85 -189.37 -1.49 -30.45 16 14 C 0.23 12.54 6.55 40.19 0.26 12.80 16 15 C -0.47 -25.83 9.14 23.49 0.21 -25.61 16 16 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 17 C 0.03 1.34 5.50 85.29 0.47 1.81 16 18 N -0.76 -41.12 11.46 21.84 0.25 -40.87 16 19 Si 0.98 38.31 29.56 68.60 2.03 40.33 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 23 C -0.27 -13.25 9.36 23.08 0.22 -13.03 16 24 H 0.08 1.93 7.55 -2.39 -0.02 1.91 16 25 H 0.08 1.63 6.56 -2.38 -0.02 1.62 16 26 H 0.05 1.79 6.46 -2.38 -0.02 1.78 16 27 H 0.41 6.40 8.31 -92.71 -0.77 5.63 16 28 H 0.41 6.18 6.83 -92.70 -0.63 5.55 16 29 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.13 4.13 8.05 -2.91 -0.02 4.10 16 31 H 0.12 4.48 6.96 -2.91 -0.02 4.46 16 32 H 0.14 5.77 8.06 -2.91 -0.02 5.75 16 33 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 34 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -63.83 294.33 4.25 -59.59 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.24 Total: 29.09 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.40 Total: -38.00 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -1.70 Total: -88.03 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Total: -63.83 4.25 -59.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245464088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.604 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds