Wall clock time and date at job start Mon Mar 30 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38469 * 120.10326 * 2 1 4 4 N 1.39845 * 120.00276 * 359.97438 * 3 2 1 5 5 C 1.39306 * 119.99114 * 179.97438 * 3 2 1 6 6 F 1.35098 * 119.90189 * 180.02562 * 5 3 2 7 7 C 1.38495 * 120.19054 * 359.97395 * 5 3 2 8 8 C 1.37920 * 120.20553 * 359.76241 * 7 5 3 9 9 C 1.39644 * 120.10092 * 179.97438 * 2 1 3 10 10 C 1.47773 * 120.09297 * 0.02562 * 9 2 1 11 11 C 1.39714 * 120.65154 * 245.02065 * 10 9 2 12 12 C 1.38366 * 118.47276 * 179.97438 * 11 10 9 13 13 C 1.39070 * 119.72924 * 0.02562 * 12 11 10 14 14 N 1.31274 * 121.34914 * 359.97438 * 13 12 11 15 15 C 1.33707 * 121.63846 * 359.97438 * 14 13 12 16 16 C 1.40780 * 119.94569 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99926 * 179.97438 * 16 15 14 18 18 C 1.40134 * 119.99841 * 0.02562 * 16 15 14 19 19 N 1.30707 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46984 * 60.00204 * 20 18 16 22 22 H 1.48505 * 109.47096 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47376 * 300.00015 * 20 18 16 24 24 H 1.08995 * 109.47491 * 270.02318 * 1 2 3 25 25 H 1.09003 * 109.47346 * 30.02801 * 1 2 3 26 26 H 1.09001 * 109.47137 * 150.02504 * 1 2 3 27 27 H 0.96998 * 119.99443 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99497 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.89576 * 180.02562 * 7 5 3 30 30 H 1.07991 * 119.99782 * 180.25525 * 8 7 5 31 31 H 1.08001 * 120.76591 * 359.95949 * 11 10 9 32 32 H 1.07997 * 120.13443 * 180.02562 * 12 11 10 33 33 H 1.08007 * 119.32097 * 180.25404 * 13 12 11 34 34 H 0.97002 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2014 1.1979 0.0000 4 7 1.5045 2.4103 -0.0005 5 6 3.5945 1.1952 0.0005 6 9 4.2703 2.3650 0.0011 7 6 4.2886 -0.0033 0.0016 8 6 3.6050 -1.2011 0.0071 9 6 2.2073 -1.2081 0.0005 10 6 1.4728 -2.4904 0.0005 11 6 1.5587 -3.3605 1.0903 12 6 0.8518 -4.5489 1.0428 13 6 0.0807 -4.8485 -0.0751 14 7 0.0062 -4.0244 -1.0942 15 6 0.6658 -2.8614 -1.1054 16 6 0.5609 -2.0047 -2.2175 17 1 1.0930 -1.0649 -2.2273 18 6 -0.2347 -2.3709 -3.3114 19 7 -0.8791 -3.5080 -3.2994 20 14 -0.3745 -1.2338 -4.7868 21 1 0.9714 -1.0214 -5.3773 22 1 -1.2685 -1.8473 -5.8016 23 1 -0.9370 0.0708 -4.3549 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 0.5345 2.4120 -0.0005 28 1 1.9911 3.2494 -0.0009 29 1 5.3687 0.0002 0.0025 30 1 4.1496 -2.1336 0.0121 31 1 2.1632 -3.1113 1.9499 32 1 0.8986 -5.2411 1.8705 33 1 -0.4718 -5.7762 -0.1034 34 1 -1.4301 -3.7613 -4.0564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245464220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:31 Heat of formation + Delta-G solvation = 6.331922 kcal Electronic energy + Delta-G solvation = -20513.684992 eV Core-core repulsion = 17325.222538 eV Total energy + Delta-G solvation = -3188.462455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.32196 -39.25320 -37.72059 -34.34339 -33.77816 -32.31991 -30.56461 -29.64654 -27.74118 -26.50705 -25.39791 -22.66632 -21.43939 -20.92112 -20.08888 -17.54095 -17.21694 -16.67108 -16.06546 -15.59954 -15.12264 -14.73726 -14.49919 -14.19768 -14.06217 -13.14306 -12.96305 -12.88975 -12.66900 -12.29637 -12.06000 -11.65795 -11.41050 -11.28195 -11.22475 -11.13268 -10.67535 -10.55867 -10.40992 -10.29172 -9.86842 -9.42351 -8.35716 -8.00708 -7.62819 -7.36584 -7.04483 -6.50432 -4.60205 1.74822 2.02516 2.67690 2.93834 3.02926 3.06154 3.17651 3.87355 4.14299 4.26797 4.66117 4.79908 5.30450 5.57172 5.73995 5.76028 5.86040 6.06482 6.13905 6.18073 6.25893 6.33754 6.47756 6.59454 6.67670 6.78361 6.87335 7.03307 7.07616 7.21885 7.28532 7.39064 7.58329 7.67144 7.83607 7.96517 8.02213 8.17922 8.54503 8.83692 10.00891 10.19215 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.008310 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.661440 B = 3368.572273 C = 4545.303186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 C 0.184 3.816 4 N -0.879 5.879 5 C -0.010 4.010 6 F -0.156 7.156 7 C -0.114 4.114 8 C -0.148 4.148 9 C 0.062 3.938 10 C -0.235 4.235 11 C -0.033 4.033 12 C -0.320 4.320 13 C 0.131 3.869 14 N -0.483 5.483 15 C 0.271 3.729 16 C -0.414 4.414 17 H 0.090 0.910 18 C 0.069 3.931 19 N -0.708 5.708 20 Si 0.901 3.099 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.263 1.263 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.399 0.601 28 H 0.394 0.606 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 6.454 3.584 7.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C 0.080 3.920 4 N -0.421 5.421 5 C -0.034 4.034 6 F -0.136 7.136 7 C -0.133 4.133 8 C -0.168 4.168 9 C 0.061 3.939 10 C -0.240 4.240 11 C -0.057 4.057 12 C -0.344 4.344 13 C -0.037 4.037 14 N -0.194 5.194 15 C 0.147 3.853 16 C -0.444 4.444 17 H 0.108 0.892 18 C -0.158 4.158 19 N -0.328 5.328 20 Si 0.725 3.275 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.229 0.771 28 H 0.222 0.778 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.095 6.136 2.681 7.016 hybrid contribution 0.515 1.186 0.114 1.298 sum 2.610 7.323 2.794 8.261 Atomic orbital electron populations 1.20847 0.90771 1.04272 1.01096 1.19408 0.96224 0.89863 1.07242 1.17456 0.89177 0.87351 0.97974 1.42337 1.08932 1.04648 1.86185 1.17087 0.87939 0.81421 1.16926 1.91351 1.80197 1.46624 1.95384 1.20676 0.99549 0.90921 1.02173 1.20946 0.93591 0.96718 1.05520 1.18435 0.91642 0.91914 0.91943 1.19258 1.09557 0.96061 0.99082 1.20848 0.96029 0.93079 0.95734 1.21205 1.10710 1.00500 1.01941 1.22595 0.94058 0.97446 0.89633 1.68777 1.22659 1.03546 1.24402 1.18465 0.86915 0.89405 0.90510 1.19629 1.22721 1.03788 0.98285 0.89210 1.26117 0.94571 0.95300 0.99783 1.70105 1.16552 1.17821 1.28298 0.86460 0.79451 0.81001 0.80556 1.18739 1.20115 1.18741 0.92849 0.93425 0.87579 0.77055 0.77799 0.85847 0.85957 0.88553 0.88733 0.86447 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 8.72 36.00 0.31 -1.79 16 2 C -0.12 -2.37 4.89 -104.01 -0.51 -2.87 16 3 C 0.18 3.24 6.74 -83.72 -0.56 2.67 16 4 N -0.88 -12.36 8.99 32.44 0.29 -12.07 16 5 C -0.01 -0.18 7.32 -39.09 -0.29 -0.47 16 6 F -0.16 -2.61 16.63 2.25 0.04 -2.57 16 7 C -0.11 -1.94 10.00 -39.60 -0.40 -2.34 16 8 C -0.15 -2.75 9.75 -39.13 -0.38 -3.14 16 9 C 0.06 1.29 4.47 -104.90 -0.47 0.82 16 10 C -0.23 -5.36 4.67 -104.07 -0.49 -5.85 16 11 C -0.03 -0.70 9.88 -38.98 -0.39 -1.09 16 12 C -0.32 -6.85 10.10 -39.23 -0.40 -7.25 16 13 C 0.13 3.02 11.17 -17.48 -0.20 2.83 16 14 N -0.48 -12.60 7.85 -10.91 -0.09 -12.69 16 15 C 0.27 6.88 5.53 -84.71 -0.47 6.41 16 16 C -0.41 -10.36 6.79 -37.91 -0.26 -10.61 16 17 H 0.09 2.20 5.90 -52.49 -0.31 1.89 16 18 C 0.07 1.67 5.50 -17.32 -0.10 1.58 16 19 N -0.71 -17.92 11.46 55.56 0.64 -17.28 16 20 Si 0.90 18.15 29.56 -169.99 -5.02 13.12 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.77 6.54 -51.93 -0.34 0.43 16 26 H 0.11 2.32 4.34 -51.93 -0.23 2.09 16 27 H 0.40 5.02 6.81 -40.82 -0.28 4.75 16 28 H 0.39 4.84 8.31 -40.82 -0.34 4.50 16 29 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 34 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -27.44 289.95 -7.51 -34.95 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -3.16 Total: 13.26 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -4.57 Total: -21.09 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.84 Total: -42.04 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.44 -7.51 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245464220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.282 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds