Wall clock time and date at job start Mon Mar 30 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38469 * 120.10326 * 2 1 4 4 N 1.39845 * 120.00276 * 359.97438 * 3 2 1 5 5 C 1.39306 * 119.99114 * 179.97438 * 3 2 1 6 6 F 1.35098 * 119.90189 * 180.02562 * 5 3 2 7 7 C 1.38495 * 120.19054 * 359.97395 * 5 3 2 8 8 C 1.37920 * 120.20553 * 359.76241 * 7 5 3 9 9 C 1.39644 * 120.10092 * 179.97438 * 2 1 3 10 10 C 1.47773 * 120.09297 * 0.02562 * 9 2 1 11 11 C 1.39714 * 120.65154 * 245.02065 * 10 9 2 12 12 C 1.38366 * 118.47276 * 179.97438 * 11 10 9 13 13 C 1.39070 * 119.72924 * 0.02562 * 12 11 10 14 14 N 1.31274 * 121.34914 * 359.97438 * 13 12 11 15 15 C 1.33707 * 121.63846 * 359.97438 * 14 13 12 16 16 C 1.40780 * 119.94569 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99926 * 179.97438 * 16 15 14 18 18 C 1.40134 * 119.99841 * 0.02562 * 16 15 14 19 19 N 1.30707 * 120.00039 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99977 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46984 * 60.00204 * 20 18 16 22 22 H 1.48505 * 109.47096 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47376 * 300.00015 * 20 18 16 24 24 H 1.08995 * 109.47491 * 270.02318 * 1 2 3 25 25 H 1.09003 * 109.47346 * 30.02801 * 1 2 3 26 26 H 1.09001 * 109.47137 * 150.02504 * 1 2 3 27 27 H 0.96998 * 119.99443 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99497 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.89576 * 180.02562 * 7 5 3 30 30 H 1.07991 * 119.99782 * 180.25525 * 8 7 5 31 31 H 1.08001 * 120.76591 * 359.95949 * 11 10 9 32 32 H 1.07997 * 120.13443 * 180.02562 * 12 11 10 33 33 H 1.08007 * 119.32097 * 180.25404 * 13 12 11 34 34 H 0.97002 * 120.00266 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2014 1.1979 0.0000 4 7 1.5045 2.4103 -0.0005 5 6 3.5945 1.1952 0.0005 6 9 4.2703 2.3650 0.0011 7 6 4.2886 -0.0033 0.0016 8 6 3.6050 -1.2011 0.0071 9 6 2.2073 -1.2081 0.0005 10 6 1.4728 -2.4904 0.0005 11 6 1.5587 -3.3605 1.0903 12 6 0.8518 -4.5489 1.0428 13 6 0.0807 -4.8485 -0.0751 14 7 0.0062 -4.0244 -1.0942 15 6 0.6658 -2.8614 -1.1054 16 6 0.5609 -2.0047 -2.2175 17 1 1.0930 -1.0649 -2.2273 18 6 -0.2347 -2.3709 -3.3114 19 7 -0.8791 -3.5080 -3.2994 20 14 -0.3745 -1.2338 -4.7868 21 1 0.9714 -1.0214 -5.3773 22 1 -1.2685 -1.8473 -5.8016 23 1 -0.9370 0.0708 -4.3549 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 0.5345 2.4120 -0.0005 28 1 1.9911 3.2494 -0.0009 29 1 5.3687 0.0002 0.0025 30 1 4.1496 -2.1336 0.0121 31 1 2.1632 -3.1113 1.9499 32 1 0.8986 -5.2411 1.8705 33 1 -0.4718 -5.7762 -0.1034 34 1 -1.4301 -3.7613 -4.0564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245464220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:31 Heat of formation + Delta-G solvation = -8.491441 kcal Electronic energy + Delta-G solvation = -20514.327782 eV Core-core repulsion = 17325.222538 eV Total energy + Delta-G solvation = -3189.105244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.65897 -40.79211 -39.34434 -35.69095 -35.53775 -33.84707 -32.28932 -31.23003 -29.24752 -28.00037 -27.08246 -24.26071 -23.18663 -22.33572 -21.63713 -19.33333 -18.54004 -17.99823 -17.59405 -17.22510 -16.48461 -16.19519 -16.08850 -15.85657 -15.55589 -14.61144 -14.47718 -14.42256 -14.14150 -13.91124 -13.66660 -13.27231 -12.91701 -12.83933 -12.82017 -12.72883 -12.36786 -12.08488 -11.90165 -11.77089 -11.39858 -11.17171 -10.07930 -9.66761 -9.41267 -8.98496 -8.37242 -8.26321 -6.42990 0.28538 0.62375 0.95769 1.22273 1.39324 1.49176 1.54510 2.21175 2.81829 2.88252 2.94299 3.42971 3.91738 4.02250 4.09342 4.30601 4.36895 4.43578 4.54633 4.75121 4.83336 4.86603 4.90423 5.03963 5.11797 5.22005 5.26702 5.42284 5.55448 5.61141 5.71412 5.81621 6.01046 6.07208 6.22036 6.35780 6.53688 6.75907 6.94357 7.03018 8.22650 8.44381 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.008310 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.661440 B = 3368.572273 C = 4545.303186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C 0.187 3.813 4 N -0.865 5.865 5 C -0.016 4.016 6 F -0.150 7.150 7 C -0.105 4.105 8 C -0.157 4.157 9 C 0.038 3.962 10 C -0.232 4.232 11 C -0.044 4.044 12 C -0.311 4.311 13 C 0.107 3.893 14 N -0.520 5.520 15 C 0.246 3.754 16 C -0.435 4.435 17 H 0.087 0.913 18 C 0.030 3.970 19 N -0.748 5.748 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.256 1.256 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.407 0.593 28 H 0.405 0.595 29 H 0.153 0.847 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 8.085 4.091 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C 0.082 3.918 4 N -0.408 5.408 5 C -0.039 4.039 6 F -0.129 7.129 7 C -0.124 4.124 8 C -0.177 4.177 9 C 0.036 3.964 10 C -0.237 4.237 11 C -0.068 4.068 12 C -0.334 4.334 13 C -0.059 4.059 14 N -0.232 5.232 15 C 0.122 3.878 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.193 4.193 19 N -0.369 5.369 20 Si 0.787 3.213 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.180 1.180 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.239 0.761 28 H 0.235 0.765 29 H 0.170 0.830 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.071 7.779 3.214 8.960 hybrid contribution 0.279 0.706 0.106 0.767 sum 3.350 8.485 3.320 9.708 Atomic orbital electron populations 1.20727 0.90767 1.03542 1.01333 1.19424 0.96387 0.90200 1.08160 1.17465 0.89479 0.87823 0.97081 1.42309 1.09458 1.04068 1.84978 1.17205 0.88067 0.81870 1.16802 1.91371 1.80008 1.46191 1.95312 1.20923 1.00985 0.90025 1.00451 1.21004 0.92875 0.97752 1.06061 1.18497 0.92559 0.91463 0.93884 1.19508 1.08542 0.97130 0.98480 1.21210 0.96338 0.93001 0.96262 1.21528 1.09107 1.00819 1.01955 1.22992 0.94971 0.97954 0.89944 1.68704 1.23941 1.04541 1.26063 1.18809 0.87709 0.89594 0.91682 1.19724 1.23770 1.03943 0.99093 0.89463 1.26870 0.93884 0.96496 1.02069 1.70196 1.17797 1.19559 1.29372 0.85487 0.79262 0.79248 0.77282 1.18891 1.19260 1.17981 0.92088 0.91410 0.90993 0.76109 0.76485 0.82975 0.85437 0.86035 0.85731 0.84758 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.93 8.72 71.23 0.62 -3.31 16 2 C -0.14 -5.14 4.89 -19.47 -0.10 -5.24 16 3 C 0.19 6.17 6.74 38.17 0.26 6.43 16 4 N -0.87 -22.03 8.99 -51.29 -0.46 -22.49 16 5 C -0.02 -0.51 7.32 22.59 0.17 -0.34 16 6 F -0.15 -4.53 16.63 44.97 0.75 -3.78 16 7 C -0.10 -3.30 10.00 22.26 0.22 -3.08 16 8 C -0.16 -5.63 9.75 22.56 0.22 -5.41 16 9 C 0.04 1.53 4.47 -20.05 -0.09 1.44 16 10 C -0.23 -10.64 4.67 -19.51 -0.09 -10.74 16 11 C -0.04 -1.85 9.88 22.66 0.22 -1.63 16 12 C -0.31 -13.02 10.10 22.50 0.23 -12.80 16 13 C 0.11 5.02 11.17 84.98 0.95 5.97 16 14 N -0.52 -27.96 7.85 -188.42 -1.48 -29.44 16 15 C 0.25 12.83 5.53 40.37 0.22 13.06 16 16 C -0.43 -22.29 6.79 23.35 0.16 -22.13 16 17 H 0.09 4.36 5.90 -2.91 -0.02 4.34 16 18 C 0.03 1.46 5.50 85.32 0.47 1.93 16 19 N -0.75 -39.09 11.46 21.86 0.25 -38.84 16 20 Si 0.97 37.57 29.56 68.60 2.03 39.60 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.11 6.54 -2.39 -0.02 2.10 16 26 H 0.07 3.21 4.34 -2.39 -0.01 3.20 16 27 H 0.41 9.19 6.81 -92.71 -0.63 8.55 16 28 H 0.41 8.71 8.31 -92.71 -0.77 7.94 16 29 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.13 4.34 8.06 -2.92 -0.02 4.31 16 31 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.14 5.57 8.06 -2.91 -0.02 5.54 16 34 H 0.28 13.29 8.29 -92.71 -0.77 12.52 16 Total: -1.00 -59.55 289.95 4.32 -55.23 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.23 Total: 35.57 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 3.46 Total: -35.84 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -1.69 Total: -90.77 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -59.55 4.32 -55.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245464220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.737 kcal (2) G-P(sol) polarization free energy of solvation -59.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds