Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36223 * 120.05934 * 2 1 4 4 C 1.39984 * 120.11788 * 179.97438 * 3 2 1 5 5 C 1.47866 * 119.89132 * 180.02562 * 4 3 2 6 6 C 1.39533 * 120.46562 * 0.02562 * 5 4 3 7 7 N 1.31720 * 120.68861 * 180.02562 * 6 5 4 8 8 C 1.32492 * 121.79181 * 359.97365 * 7 6 5 9 9 N 1.38849 * 119.55660 * 180.02562 * 8 7 6 10 10 C 1.39552 * 120.88582 * 359.97438 * 8 7 6 11 11 F 1.35095 * 120.39569 * 180.02562 * 10 8 7 12 12 C 1.38102 * 119.20829 * 359.80986 * 10 8 7 13 13 C 1.40029 * 120.22711 * 0.04638 * 4 3 2 14 14 C 1.36196 * 120.11330 * 359.97438 * 13 4 3 15 15 C 1.40941 * 120.05978 * 180.02562 * 2 1 3 16 16 C 1.40996 * 120.10785 * 0.25429 * 15 2 1 17 17 H 1.07996 * 120.00112 * 329.31626 * 16 15 2 18 18 C 1.39959 * 119.99709 * 149.32222 * 16 15 2 19 19 N 1.30833 * 119.99858 * 162.15138 * 18 16 15 20 20 Si 1.86801 * 120.00283 * 342.15437 * 18 16 15 21 21 H 1.48500 * 109.47335 * 95.38939 * 20 18 16 22 22 H 1.48500 * 109.46948 * 215.39046 * 20 18 16 23 23 H 1.48500 * 109.47070 * 335.38697 * 20 18 16 24 24 H 1.08994 * 109.47102 * 269.95523 * 1 2 3 25 25 H 1.08997 * 109.47234 * 29.95792 * 1 2 3 26 26 H 1.09008 * 109.47217 * 149.95443 * 1 2 3 27 27 H 1.08003 * 119.93960 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.65942 * 359.97438 * 6 5 4 29 29 H 0.97008 * 120.00234 * 0.02562 * 9 8 7 30 30 H 0.97003 * 120.00265 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.81508 * 180.20891 * 12 10 8 32 32 H 1.08005 * 119.94806 * 180.02562 * 13 4 3 33 33 H 1.08007 * 120.05486 * 179.97438 * 14 13 4 34 34 H 0.97000 * 119.99693 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5892 1.1805 0.0005 5 6 4.3248 2.4632 0.0011 6 6 3.6334 3.6752 0.0017 7 7 4.2842 4.8204 0.0017 8 6 5.6082 4.8708 0.0017 9 7 6.2466 6.1038 0.0022 10 6 6.3696 3.7013 0.0022 11 9 7.7191 3.7643 0.0027 12 6 5.7271 2.4788 0.0067 13 6 4.2954 -0.0287 0.0001 14 6 3.6226 -1.2129 -0.0003 15 6 2.2130 -1.2198 -0.0005 16 6 1.5116 -2.4430 -0.0065 17 1 0.5434 -2.5125 0.4669 18 6 2.0702 -3.5669 -0.6258 19 7 1.6158 -4.7615 -0.3460 20 14 3.4645 -3.3615 -1.8518 21 1 4.7646 -3.5474 -1.1586 22 1 3.3291 -4.3740 -2.9296 23 1 3.4083 -1.9999 -2.4419 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3634 -0.8896 -0.5146 27 1 1.6493 2.1143 0.0004 28 1 2.5533 3.6744 0.0012 29 1 5.7236 6.9208 0.0030 30 1 7.2156 6.1483 0.0018 31 1 6.2908 1.5576 0.0107 32 1 5.3754 -0.0224 0.0009 33 1 4.1682 -2.1450 -0.0011 34 1 2.0028 -5.5404 -0.7755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245522037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = -2.024175 kcal Electronic energy + Delta-G solvation = -19602.588257 eV Core-core repulsion = 16413.763455 eV Total energy + Delta-G solvation = -3188.824802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.71297 -39.83523 -38.13004 -34.97268 -33.72480 -32.48448 -31.28013 -30.91652 -28.39551 -26.41202 -24.80088 -23.47467 -22.51962 -21.14805 -19.56860 -17.86960 -17.55183 -17.38834 -16.71216 -15.64339 -15.62124 -15.30360 -14.78909 -14.25682 -14.09415 -13.51903 -13.48571 -13.06655 -12.95065 -12.75147 -12.47682 -11.99144 -11.85678 -11.62309 -11.30224 -11.14018 -10.92635 -10.53054 -10.23388 -10.04467 -9.67048 -9.49519 -9.35623 -9.15971 -8.15173 -7.75886 -7.16594 -7.00381 -4.59266 1.23013 1.38236 2.57312 2.65285 3.01560 3.12682 3.22046 3.54024 3.84004 3.98508 4.35186 4.48189 4.75329 5.10544 5.23839 5.26307 5.58775 5.76324 5.92581 5.95193 6.15290 6.20747 6.25140 6.43500 6.53152 6.68661 6.69300 6.84439 6.85343 6.99577 7.30277 7.35033 7.44886 7.55674 7.63927 7.75457 7.95962 8.15156 8.30719 8.48886 8.59868 9.83479 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.004784 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.835847 B = 5851.824452 C = 6650.170335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.181 4.181 3 C -0.056 4.056 4 C -0.192 4.192 5 C -0.054 4.054 6 C 0.113 3.887 7 N -0.512 5.512 8 C 0.344 3.656 9 N -0.856 5.856 10 C -0.012 4.012 11 F -0.144 7.144 12 C -0.096 4.096 13 C -0.055 4.055 14 C -0.238 4.238 15 C 0.099 3.901 16 C -0.424 4.424 17 H 0.098 0.902 18 C 0.082 3.918 19 N -0.793 5.793 20 Si 0.912 3.088 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.241 1.241 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.162 0.838 29 H 0.403 0.597 30 H 0.406 0.594 31 H 0.142 0.858 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 11.569 -0.788 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.182 4.182 3 C -0.074 4.074 4 C -0.194 4.194 5 C -0.058 4.058 6 C -0.045 4.045 7 N -0.228 5.228 8 C 0.107 3.893 9 N -0.402 5.402 10 C -0.038 4.038 11 F -0.123 7.123 12 C -0.123 4.123 13 C -0.074 4.074 14 C -0.257 4.257 15 C 0.096 3.904 16 C -0.451 4.451 17 H 0.115 0.885 18 C -0.139 4.139 19 N -0.415 5.415 20 Si 0.738 3.262 21 H -0.194 1.194 22 H -0.216 1.216 23 H -0.164 1.164 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.179 0.821 29 H 0.232 0.768 30 H 0.235 0.765 31 H 0.160 0.840 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.152 11.992 -0.795 13.076 hybrid contribution 1.606 -0.661 -0.447 1.793 sum 6.758 11.331 -1.242 13.251 Atomic orbital electron populations 1.20469 0.92739 1.01136 1.00330 1.19429 0.94892 0.92515 1.11333 1.20300 0.92517 0.96469 0.98159 1.17759 0.92445 0.89735 1.19474 1.19530 0.91611 0.94774 0.99912 1.22601 0.99924 0.85699 0.96277 1.67106 1.05883 1.30624 1.19173 1.18214 0.88755 0.85532 0.96821 1.41897 1.09034 1.04336 1.84971 1.17867 0.77105 0.94088 1.14704 1.91412 1.28808 1.97102 1.94976 1.21455 0.94767 0.96314 0.99726 1.20405 0.97454 0.92242 0.97275 1.20697 0.94601 0.96446 1.13930 1.17689 0.91283 0.92794 0.88647 1.19617 1.05209 0.91421 1.28862 0.88462 1.26297 0.96919 0.94157 0.96558 1.69690 1.37881 0.99442 1.34526 0.86270 0.80081 0.80158 0.79652 1.19418 1.21621 1.16401 0.93448 0.93853 0.91578 0.88237 0.82113 0.76784 0.76473 0.84026 0.88648 0.88007 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.41 36.01 0.34 -1.34 16 2 C -0.18 -3.86 5.90 -104.32 -0.62 -4.48 16 3 C -0.06 -1.10 9.00 -39.65 -0.36 -1.46 16 4 C -0.19 -3.80 5.90 -104.63 -0.62 -4.41 16 5 C -0.05 -0.95 5.90 -104.72 -0.62 -1.57 16 6 C 0.11 1.83 10.59 -17.12 -0.18 1.65 16 7 N -0.51 -8.19 10.37 -12.02 -0.12 -8.32 16 8 C 0.34 5.16 7.75 -154.93 -1.20 3.96 16 9 N -0.86 -9.50 9.06 31.20 0.28 -9.22 16 10 C -0.01 -0.18 7.34 -39.14 -0.29 -0.47 16 11 F -0.14 -2.11 16.63 2.25 0.04 -2.07 16 12 C -0.10 -1.59 9.50 -38.88 -0.37 -1.96 16 13 C -0.06 -1.14 9.37 -39.64 -0.37 -1.52 16 14 C -0.24 -5.40 7.08 -39.28 -0.28 -5.68 16 15 C 0.10 2.35 5.09 -106.80 -0.54 1.80 16 16 C -0.42 -10.57 8.50 -37.89 -0.32 -10.90 16 17 H 0.10 2.51 7.22 -52.49 -0.38 2.13 16 18 C 0.08 2.00 5.40 -17.33 -0.09 1.91 16 19 N -0.79 -19.76 13.93 55.55 0.77 -18.99 16 20 Si 0.91 19.68 24.52 -169.99 -4.17 15.51 16 21 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 22 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.24 -5.37 6.86 56.52 0.39 -4.98 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.07 1.29 6.85 -51.92 -0.36 0.93 16 27 H 0.10 1.66 6.19 -52.48 -0.33 1.33 16 28 H 0.16 2.33 6.19 -52.48 -0.32 2.00 16 29 H 0.40 3.77 8.95 -40.82 -0.37 3.41 16 30 H 0.41 3.72 8.28 -40.82 -0.34 3.39 16 31 H 0.14 2.18 6.29 -52.49 -0.33 1.85 16 32 H 0.10 1.73 6.23 -52.48 -0.33 1.41 16 33 H 0.10 2.31 4.79 -52.48 -0.25 2.05 16 34 H 0.29 6.51 8.30 -40.82 -0.34 6.18 16 LS Contribution 287.43 15.07 4.33 4.33 Total: -1.00 -26.31 287.43 -7.39 -33.70 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -3.01 Total: 9.50 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -5.52 Total: -24.46 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.93 Total: -36.52 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.17 Total: 15.51 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.31 -7.39 -33.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245522037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.680 kcal (2) G-P(sol) polarization free energy of solvation -26.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds