Wall clock time and date at job start Mon Mar 30 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36223 * 120.05934 * 2 1 4 4 C 1.39984 * 120.11788 * 179.97438 * 3 2 1 5 5 C 1.47866 * 119.89132 * 180.02562 * 4 3 2 6 6 C 1.39533 * 120.46562 * 0.02562 * 5 4 3 7 7 N 1.31720 * 120.68861 * 180.02562 * 6 5 4 8 8 C 1.32492 * 121.79181 * 359.97365 * 7 6 5 9 9 N 1.38849 * 119.55660 * 180.02562 * 8 7 6 10 10 C 1.39552 * 120.88582 * 359.97438 * 8 7 6 11 11 F 1.35095 * 120.39569 * 180.02562 * 10 8 7 12 12 C 1.38102 * 119.20829 * 359.80986 * 10 8 7 13 13 C 1.40029 * 120.22711 * 0.04638 * 4 3 2 14 14 C 1.36196 * 120.11330 * 359.97438 * 13 4 3 15 15 C 1.40941 * 120.05978 * 180.02562 * 2 1 3 16 16 C 1.40996 * 120.10785 * 0.25429 * 15 2 1 17 17 H 1.07996 * 120.00112 * 329.31626 * 16 15 2 18 18 C 1.39959 * 119.99709 * 149.32222 * 16 15 2 19 19 N 1.30833 * 119.99858 * 162.15138 * 18 16 15 20 20 Si 1.86801 * 120.00283 * 342.15437 * 18 16 15 21 21 H 1.48500 * 109.47335 * 95.38939 * 20 18 16 22 22 H 1.48500 * 109.46948 * 215.39046 * 20 18 16 23 23 H 1.48500 * 109.47070 * 335.38697 * 20 18 16 24 24 H 1.08994 * 109.47102 * 269.95523 * 1 2 3 25 25 H 1.08997 * 109.47234 * 29.95792 * 1 2 3 26 26 H 1.09008 * 109.47217 * 149.95443 * 1 2 3 27 27 H 1.08003 * 119.93960 * 0.02562 * 3 2 1 28 28 H 1.08006 * 119.65942 * 359.97438 * 6 5 4 29 29 H 0.97008 * 120.00234 * 0.02562 * 9 8 7 30 30 H 0.97003 * 120.00265 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.81508 * 180.20891 * 12 10 8 32 32 H 1.08005 * 119.94806 * 180.02562 * 13 4 3 33 33 H 1.08007 * 120.05486 * 179.97438 * 14 13 4 34 34 H 0.97000 * 119.99693 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5892 1.1805 0.0005 5 6 4.3248 2.4632 0.0011 6 6 3.6334 3.6752 0.0017 7 7 4.2842 4.8204 0.0017 8 6 5.6082 4.8708 0.0017 9 7 6.2466 6.1038 0.0022 10 6 6.3696 3.7013 0.0022 11 9 7.7191 3.7643 0.0027 12 6 5.7271 2.4788 0.0067 13 6 4.2954 -0.0287 0.0001 14 6 3.6226 -1.2129 -0.0003 15 6 2.2130 -1.2198 -0.0005 16 6 1.5116 -2.4430 -0.0065 17 1 0.5434 -2.5125 0.4669 18 6 2.0702 -3.5669 -0.6258 19 7 1.6158 -4.7615 -0.3460 20 14 3.4645 -3.3615 -1.8518 21 1 4.7646 -3.5474 -1.1586 22 1 3.3291 -4.3740 -2.9296 23 1 3.4083 -1.9999 -2.4419 24 1 -0.3633 -0.0008 1.0276 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3634 -0.8896 -0.5146 27 1 1.6493 2.1143 0.0004 28 1 2.5533 3.6744 0.0012 29 1 5.7236 6.9208 0.0030 30 1 7.2156 6.1483 0.0018 31 1 6.2908 1.5576 0.0107 32 1 5.3754 -0.0224 0.0009 33 1 4.1682 -2.1450 -0.0011 34 1 2.0028 -5.5404 -0.7755 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245522037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:03 Heat of formation + Delta-G solvation = -16.848253 kcal Electronic energy + Delta-G solvation = -19603.231077 eV Core-core repulsion = 16413.763455 eV Total energy + Delta-G solvation = -3189.467623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88783 -41.13902 -39.70914 -36.30455 -35.29156 -33.90411 -32.78624 -32.38635 -29.82643 -27.92875 -26.35680 -24.78326 -23.96968 -22.69554 -21.10930 -19.42012 -18.87379 -18.60803 -18.04082 -17.23445 -16.83466 -16.47013 -16.18129 -15.85848 -15.57167 -14.96880 -14.76770 -14.60674 -14.46950 -14.31089 -13.86684 -13.46186 -13.39996 -13.13144 -12.78905 -12.72568 -12.59319 -12.09149 -11.72444 -11.64174 -11.33073 -11.04979 -10.67178 -10.56627 -9.61531 -9.36180 -8.92793 -8.40977 -6.39248 -0.10392 0.10572 0.93226 1.02830 1.28284 1.43021 1.49815 2.11129 2.47075 2.50440 2.92299 3.14935 3.52509 3.57134 3.82950 3.96185 4.19126 4.29693 4.44919 4.59466 4.67679 4.80415 4.89442 4.90067 5.06122 5.11527 5.18085 5.31808 5.34915 5.54493 5.72494 5.85392 6.00523 6.04698 6.24450 6.26420 6.40860 6.49812 6.75369 6.85526 7.18429 8.13842 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.004784 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.835847 B = 5851.824452 C = 6650.170335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.190 4.190 3 C -0.063 4.063 4 C -0.166 4.166 5 C -0.087 4.087 6 C 0.129 3.871 7 N -0.524 5.524 8 C 0.357 3.643 9 N -0.836 5.836 10 C -0.024 4.024 11 F -0.138 7.138 12 C -0.088 4.088 13 C -0.072 4.072 14 C -0.250 4.250 15 C 0.076 3.924 16 C -0.463 4.463 17 H 0.069 0.931 18 C 0.051 3.949 19 N -0.840 5.840 20 Si 0.959 3.041 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.253 1.253 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.135 0.865 28 H 0.180 0.820 29 H 0.415 0.585 30 H 0.418 0.582 31 H 0.150 0.850 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 15.477 -1.140 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.191 4.191 3 C -0.081 4.081 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.029 4.029 7 N -0.241 5.241 8 C 0.118 3.882 9 N -0.382 5.382 10 C -0.050 4.050 11 F -0.117 7.117 12 C -0.114 4.114 13 C -0.090 4.090 14 C -0.269 4.269 15 C 0.074 3.926 16 C -0.491 4.491 17 H 0.087 0.913 18 C -0.165 4.165 19 N -0.466 5.466 20 Si 0.783 3.217 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.177 1.177 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.153 0.847 28 H 0.197 0.803 29 H 0.246 0.754 30 H 0.249 0.751 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.909 15.948 -1.143 17.418 hybrid contribution 1.281 -1.289 -0.270 1.837 sum 8.190 14.659 -1.413 16.851 Atomic orbital electron populations 1.20462 0.91225 1.01700 1.00947 1.19838 0.96391 0.92475 1.10394 1.20660 0.92748 0.97221 0.97481 1.18116 0.92831 0.90520 1.15316 1.19395 0.92046 0.94129 1.03577 1.22889 1.00858 0.85249 0.93867 1.67252 1.06186 1.30253 1.20434 1.18512 0.88707 0.86598 0.94392 1.41967 1.09920 1.03629 1.82723 1.17849 0.77496 0.94048 1.15647 1.91432 1.28257 1.97053 1.94987 1.21615 0.94604 0.97190 0.97997 1.20695 0.98879 0.91884 0.97516 1.20795 0.94441 0.97197 1.14496 1.17892 0.91963 0.93214 0.89578 1.19501 1.04913 0.92957 1.31751 0.91328 1.26802 0.98493 0.93818 0.97415 1.69720 1.40157 1.00004 1.36727 0.85565 0.78466 0.79350 0.78291 1.18643 1.20612 1.17682 0.92753 0.90784 0.93434 0.84705 0.80289 0.75390 0.75074 0.83282 0.86287 0.88667 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 9.41 71.24 0.67 -2.52 16 2 C -0.19 -8.04 5.90 -19.67 -0.12 -8.15 16 3 C -0.06 -2.32 9.00 22.22 0.20 -2.12 16 4 C -0.17 -6.13 5.90 -19.87 -0.12 -6.25 16 5 C -0.09 -2.74 5.90 -19.93 -0.12 -2.86 16 6 C 0.13 3.65 10.59 85.02 0.90 4.55 16 7 N -0.52 -14.50 10.37 -191.96 -1.99 -16.49 16 8 C 0.36 9.17 7.75 133.19 1.03 10.20 16 9 N -0.84 -14.75 9.06 -55.22 -0.50 -15.25 16 10 C -0.02 -0.66 7.34 22.55 0.17 -0.49 16 11 F -0.14 -3.54 16.63 44.97 0.75 -2.79 16 12 C -0.09 -2.60 9.50 22.73 0.22 -2.39 16 13 C -0.07 -2.85 9.37 22.23 0.21 -2.64 16 14 C -0.25 -11.44 7.08 22.46 0.16 -11.28 16 15 C 0.08 3.70 5.09 -21.27 -0.11 3.59 16 16 C -0.46 -24.52 8.50 23.36 0.20 -24.32 16 17 H 0.07 3.86 7.22 -2.91 -0.02 3.84 16 18 C 0.05 2.61 5.40 85.26 0.46 3.07 16 19 N -0.84 -44.51 13.93 21.83 0.30 -44.20 16 20 Si 0.96 41.81 24.52 68.60 1.68 43.50 16 21 H -0.26 -10.86 6.71 99.48 0.67 -10.19 16 22 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.25 -11.34 6.86 99.48 0.68 -10.65 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 26 H 0.05 1.91 6.85 -2.38 -0.02 1.90 16 27 H 0.14 3.92 6.19 -2.91 -0.02 3.90 16 28 H 0.18 4.31 6.19 -2.91 -0.02 4.29 16 29 H 0.41 5.85 8.95 -92.70 -0.83 5.02 16 30 H 0.42 5.77 8.28 -92.71 -0.77 5.00 16 31 H 0.15 4.10 6.29 -2.91 -0.02 4.09 16 32 H 0.12 4.07 6.23 -2.91 -0.02 4.05 16 33 H 0.10 4.39 4.79 -2.91 -0.01 4.38 16 34 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -58.20 287.43 3.52 -54.67 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.47 Total: 22.17 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 3.75 Total: -41.61 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.19 Total: -75.95 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.75 Total: -2.79 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.68 Total: 43.50 kcal Total: -58.20 3.52 -54.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245522037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.826 kcal (2) G-P(sol) polarization free energy of solvation -58.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds