Wall clock time and date at job start Mon Mar 30 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38110 * 120.38658 * 2 1 4 4 C 1.39925 * 118.40176 * 180.02562 * 3 2 1 5 5 C 1.48367 * 120.45720 * 179.97438 * 4 3 2 6 6 C 1.39601 * 120.01645 * 309.99288 * 5 4 3 7 7 C 1.38464 * 120.42150 * 180.02562 * 6 5 4 8 8 C 1.37654 * 120.45191 * 359.96190 * 7 6 5 9 9 C 1.40758 * 120.02287 * 0.03860 * 8 7 6 10 10 C 1.41323 * 120.20718 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99426 * 204.63331 * 10 9 8 12 12 C 1.39926 * 120.00049 * 24.63803 * 10 9 8 13 13 N 1.30846 * 119.99944 * 17.79926 * 12 10 9 14 14 Si 1.86799 * 119.99826 * 197.80352 * 12 10 9 15 15 H 1.48500 * 109.47579 * 89.99659 * 14 12 10 16 16 H 1.48504 * 109.46959 * 209.99708 * 14 12 10 17 17 H 1.48499 * 109.46928 * 329.99396 * 14 12 10 18 18 C 1.39070 * 120.01850 * 129.72185 * 5 4 3 19 19 F 1.35099 * 120.22358 * 359.97438 * 18 5 4 20 20 C 1.39198 * 119.08780 * 359.97438 * 4 3 2 21 21 N 1.31792 * 120.68727 * 0.03242 * 20 4 3 22 22 C 1.32465 * 121.74670 * 359.65344 * 21 20 4 23 23 N 1.38956 * 119.57293 * 180.33982 * 22 21 20 24 24 H 1.08999 * 109.47224 * 90.00364 * 1 2 3 25 25 H 1.08991 * 109.47225 * 330.00115 * 1 2 3 26 26 H 1.08997 * 109.46966 * 209.99697 * 1 2 3 27 27 H 1.07994 * 120.80166 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.78656 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.77811 * 179.97438 * 7 6 5 30 30 H 1.08006 * 119.98698 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99821 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.65693 * 180.02562 * 20 4 3 33 33 H 0.96998 * 119.99275 * 180.29199 * 23 22 21 34 34 H 0.96991 * 119.99936 * 0.28917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1914 0.0000 4 6 3.6040 1.1429 -0.0006 5 6 4.3999 2.3950 -0.0011 6 6 4.1185 3.4009 -0.9273 7 6 4.8563 4.5726 -0.9357 8 6 5.8762 4.7614 -0.0307 9 6 6.1761 3.7595 0.9115 10 6 7.2219 3.9494 1.8428 11 1 7.7170 3.0951 2.2803 12 6 7.6160 5.2442 2.1979 13 7 6.8234 6.2577 1.9599 14 14 9.2736 5.5258 3.0118 15 1 10.3029 5.7661 1.9686 16 1 9.1910 6.7076 3.9072 17 1 9.6447 4.3275 3.8066 18 6 5.4229 2.5696 0.9246 19 9 5.6958 1.6020 1.8271 20 6 4.2381 -0.0962 -0.0005 21 7 3.5357 -1.2113 -0.0006 22 6 2.2111 -1.2006 0.0060 23 7 1.5156 -2.4036 0.0128 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8899 0.5138 26 1 -0.3633 -0.8900 0.5138 27 1 1.6851 2.1376 0.0004 28 1 3.3203 3.2644 -1.6418 29 1 4.6300 5.3438 -1.6571 30 1 6.4466 5.6784 -0.0437 31 1 7.0968 7.1553 2.2057 32 1 5.3171 -0.1443 -0.0005 33 1 0.5456 -2.4029 0.0134 34 1 2.0000 -3.2438 0.0168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245536217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:31 Heat of formation + Delta-G solvation = -3.448270 kcal Electronic energy + Delta-G solvation = -19785.606660 eV Core-core repulsion = 16596.720104 eV Total energy + Delta-G solvation = -3188.886556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.24967 -39.95674 -37.33612 -34.90690 -33.77066 -33.14095 -30.96460 -29.62230 -27.78133 -26.69267 -25.35736 -22.88448 -22.20614 -20.73808 -20.06720 -17.43575 -17.29428 -17.12716 -16.02961 -15.33271 -14.89588 -14.81398 -14.42619 -14.14364 -13.92269 -13.63440 -13.36099 -12.89908 -12.70029 -12.59093 -12.44971 -11.88929 -11.80130 -11.49513 -11.26170 -11.11706 -10.91796 -10.56642 -10.29652 -9.92974 -9.61897 -9.29394 -9.18920 -9.09472 -7.86730 -7.47617 -7.01629 -6.83275 -4.45746 1.56041 1.71742 2.64148 2.78091 3.04141 3.08943 3.13245 3.69632 3.87900 4.24404 4.50420 4.89827 5.05168 5.23834 5.41540 5.46255 5.57164 5.61120 5.62812 5.85461 5.98047 6.16097 6.25215 6.42449 6.51873 6.68507 6.78448 6.96089 7.08564 7.12910 7.42547 7.46275 7.56276 7.61507 7.87647 7.93105 8.03703 8.47557 8.53029 8.69027 8.78170 10.07233 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032832 B = 0.004602 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.620950 B = 6083.432515 C = 6585.267490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.210 4.210 3 C -0.027 4.027 4 C -0.119 4.119 5 C -0.053 4.053 6 C -0.203 4.203 7 C -0.111 4.111 8 C -0.143 4.143 9 C 0.086 3.914 10 C -0.454 4.454 11 H 0.083 0.917 12 C 0.077 3.923 13 N -0.790 5.790 14 Si 0.912 3.088 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.260 1.260 18 C -0.012 4.012 19 F -0.158 7.158 20 C 0.156 3.844 21 N -0.542 5.542 22 C 0.388 3.612 23 N -0.859 5.859 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.283 0.717 32 H 0.155 0.845 33 H 0.403 0.597 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -7.289 -3.558 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.217 4.217 3 C -0.053 4.053 4 C -0.123 4.123 5 C -0.055 4.055 6 C -0.223 4.223 7 C -0.130 4.130 8 C -0.163 4.163 9 C 0.083 3.917 10 C -0.483 4.483 11 H 0.101 0.899 12 C -0.142 4.142 13 N -0.414 5.414 14 Si 0.736 3.264 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.184 1.184 18 C -0.032 4.032 19 F -0.137 7.137 20 C -0.001 4.001 21 N -0.258 5.258 22 C 0.151 3.849 23 N -0.404 5.404 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.233 0.767 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.956 -7.828 -3.472 11.689 hybrid contribution 0.131 0.618 0.581 0.858 sum -7.826 -7.210 -2.891 11.026 Atomic orbital electron populations 1.20513 0.90958 1.02251 1.01692 1.19994 0.96566 0.92448 1.12673 1.21305 0.93020 0.97242 0.93725 1.19597 0.93276 0.94275 1.05200 1.18084 0.96389 0.93227 0.97775 1.20223 1.04468 0.94956 1.02624 1.20647 0.97154 0.96159 0.98996 1.21239 0.99446 1.00619 0.94968 1.17558 0.91715 0.89670 0.92791 1.19525 1.14640 0.93081 1.21060 0.89855 1.25901 0.98236 0.95522 0.94496 1.69813 1.34488 1.00812 1.36331 0.86230 0.81716 0.78887 0.79517 1.19090 1.20191 1.18427 1.17834 1.00786 0.90471 0.94134 1.91278 1.93611 1.62173 1.66641 1.22533 0.99483 0.85972 0.92070 1.67108 1.05687 1.32157 1.20898 1.18139 0.88441 0.86042 0.92259 1.42153 1.08497 1.05033 1.84757 0.91757 0.91410 0.92407 0.85005 0.88503 0.88591 0.85652 0.90602 0.82765 0.76670 0.77222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.59 36.00 0.35 -0.67 16 2 C -0.21 -3.12 5.91 -104.32 -0.62 -3.74 16 3 C -0.03 -0.47 9.33 -39.00 -0.36 -0.83 16 4 C -0.12 -2.37 5.31 -104.74 -0.56 -2.92 16 5 C -0.05 -1.19 5.49 -104.91 -0.58 -1.77 16 6 C -0.20 -4.34 9.53 -38.99 -0.37 -4.71 16 7 C -0.11 -2.45 10.01 -39.71 -0.40 -2.85 16 8 C -0.14 -3.56 8.69 -38.84 -0.34 -3.90 16 9 C 0.09 2.27 5.58 -106.79 -0.60 1.67 16 10 C -0.45 -12.05 8.78 -37.78 -0.33 -12.38 16 11 H 0.08 2.20 7.74 -52.49 -0.41 1.79 16 12 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 13 N -0.79 -19.78 10.96 55.55 0.61 -19.17 16 14 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 18 C -0.01 -0.30 7.17 -38.29 -0.27 -0.57 16 19 F -0.16 -3.99 15.37 2.25 0.03 -3.95 16 20 C 0.16 3.03 10.04 -17.21 -0.17 2.86 16 21 N -0.54 -9.77 10.38 -12.17 -0.13 -9.90 16 22 C 0.39 6.01 7.73 -154.99 -1.20 4.81 16 23 N -0.86 -9.48 8.98 31.14 0.28 -9.20 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.06 0.49 6.53 -51.93 -0.34 0.16 16 27 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.10 1.83 8.04 -52.49 -0.42 1.40 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.13 3.18 6.16 -52.48 -0.32 2.85 16 31 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 32 H 0.16 2.97 7.80 -52.48 -0.41 2.56 16 33 H 0.40 3.30 6.78 -40.82 -0.28 3.02 16 34 H 0.40 3.96 8.95 -40.82 -0.37 3.60 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -28.70 297.53 -8.65 -37.35 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -3.36 Total: 10.17 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -5.54 Total: -23.19 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.76 Total: -38.28 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.03 Total: -3.95 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.70 -8.65 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.901 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds