Wall clock time and date at job start Mon Mar 30 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38110 * 120.38658 * 2 1 4 4 C 1.39925 * 118.40176 * 180.02562 * 3 2 1 5 5 C 1.48367 * 120.45720 * 179.97438 * 4 3 2 6 6 C 1.39601 * 120.01645 * 309.99288 * 5 4 3 7 7 C 1.38464 * 120.42150 * 180.02562 * 6 5 4 8 8 C 1.37654 * 120.45191 * 359.96190 * 7 6 5 9 9 C 1.40758 * 120.02287 * 0.03860 * 8 7 6 10 10 C 1.41323 * 120.20718 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99426 * 204.63331 * 10 9 8 12 12 C 1.39926 * 120.00049 * 24.63803 * 10 9 8 13 13 N 1.30846 * 119.99944 * 17.79926 * 12 10 9 14 14 Si 1.86799 * 119.99826 * 197.80352 * 12 10 9 15 15 H 1.48500 * 109.47579 * 89.99659 * 14 12 10 16 16 H 1.48504 * 109.46959 * 209.99708 * 14 12 10 17 17 H 1.48499 * 109.46928 * 329.99396 * 14 12 10 18 18 C 1.39070 * 120.01850 * 129.72185 * 5 4 3 19 19 F 1.35099 * 120.22358 * 359.97438 * 18 5 4 20 20 C 1.39198 * 119.08780 * 359.97438 * 4 3 2 21 21 N 1.31792 * 120.68727 * 0.03242 * 20 4 3 22 22 C 1.32465 * 121.74670 * 359.65344 * 21 20 4 23 23 N 1.38956 * 119.57293 * 180.33982 * 22 21 20 24 24 H 1.08999 * 109.47224 * 90.00364 * 1 2 3 25 25 H 1.08991 * 109.47225 * 330.00115 * 1 2 3 26 26 H 1.08997 * 109.46966 * 209.99697 * 1 2 3 27 27 H 1.07994 * 120.80166 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.78656 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.77811 * 179.97438 * 7 6 5 30 30 H 1.08006 * 119.98698 * 180.02562 * 8 7 6 31 31 H 0.96997 * 119.99821 * 180.02562 * 13 12 10 32 32 H 1.08004 * 119.65693 * 180.02562 * 20 4 3 33 33 H 0.96998 * 119.99275 * 180.29199 * 23 22 21 34 34 H 0.96991 * 119.99936 * 0.28917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1914 0.0000 4 6 3.6040 1.1429 -0.0006 5 6 4.3999 2.3950 -0.0011 6 6 4.1185 3.4009 -0.9273 7 6 4.8563 4.5726 -0.9357 8 6 5.8762 4.7614 -0.0307 9 6 6.1761 3.7595 0.9115 10 6 7.2219 3.9494 1.8428 11 1 7.7170 3.0951 2.2803 12 6 7.6160 5.2442 2.1979 13 7 6.8234 6.2577 1.9599 14 14 9.2736 5.5258 3.0118 15 1 10.3029 5.7661 1.9686 16 1 9.1910 6.7076 3.9072 17 1 9.6447 4.3275 3.8066 18 6 5.4229 2.5696 0.9246 19 9 5.6958 1.6020 1.8271 20 6 4.2381 -0.0962 -0.0005 21 7 3.5357 -1.2113 -0.0006 22 6 2.2111 -1.2006 0.0060 23 7 1.5156 -2.4036 0.0128 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8899 0.5138 26 1 -0.3633 -0.8900 0.5138 27 1 1.6851 2.1376 0.0004 28 1 3.3203 3.2644 -1.6418 29 1 4.6300 5.3438 -1.6571 30 1 6.4466 5.6784 -0.0437 31 1 7.0968 7.1553 2.2057 32 1 5.3171 -0.1443 -0.0005 33 1 0.5456 -2.4029 0.0134 34 1 2.0000 -3.2438 0.0168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245536217.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:30 Heat of formation + Delta-G solvation = -19.353535 kcal Electronic energy + Delta-G solvation = -19786.296364 eV Core-core repulsion = 16596.720104 eV Total energy + Delta-G solvation = -3189.576260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.18522 -41.25943 -39.10753 -36.30569 -35.38642 -34.40151 -32.44343 -31.44903 -29.19863 -27.92175 -27.22257 -24.26601 -23.65004 -22.53559 -21.65837 -19.11076 -18.60515 -18.33788 -17.89121 -17.10625 -16.55290 -16.24604 -16.02988 -15.65100 -15.41706 -14.97877 -14.86302 -14.61790 -13.93328 -13.77076 -13.68372 -13.59260 -13.37423 -13.09415 -12.85769 -12.77956 -12.48462 -12.17019 -11.76493 -11.67423 -11.36946 -11.09324 -10.50922 -10.43904 -9.48588 -9.27933 -8.72249 -8.41220 -6.41883 0.15686 0.36830 0.83520 1.06032 1.37125 1.49654 1.50239 2.19281 2.61423 2.64397 2.93492 3.50546 3.67191 3.85410 4.01296 4.08576 4.15060 4.33385 4.51490 4.56494 4.76615 4.80918 4.85623 4.96640 5.10737 5.16062 5.26839 5.29226 5.36983 5.62563 5.71591 5.77611 6.02453 6.04333 6.18121 6.39836 6.54427 6.58326 6.77927 6.88670 7.34799 8.25972 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.032832 B = 0.004602 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.620950 B = 6083.432515 C = 6585.267490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.200 4.200 3 C -0.032 4.032 4 C -0.149 4.149 5 C -0.045 4.045 6 C -0.195 4.195 7 C -0.105 4.105 8 C -0.165 4.165 9 C 0.057 3.943 10 C -0.497 4.497 11 H 0.067 0.933 12 C 0.042 3.958 13 N -0.816 5.816 14 Si 0.983 3.017 15 H -0.257 1.257 16 H -0.262 1.262 17 H -0.266 1.266 18 C -0.046 4.046 19 F -0.168 7.168 20 C 0.142 3.858 21 N -0.561 5.561 22 C 0.385 3.615 23 N -0.836 5.836 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.115 0.885 31 H 0.293 0.707 32 H 0.139 0.861 33 H 0.420 0.580 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 -7.816 -4.302 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.207 4.207 3 C -0.057 4.057 4 C -0.154 4.154 5 C -0.046 4.046 6 C -0.215 4.215 7 C -0.124 4.124 8 C -0.184 4.184 9 C 0.055 3.945 10 C -0.526 4.526 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.441 5.441 14 Si 0.803 3.197 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.190 1.190 18 C -0.067 4.067 19 F -0.147 7.147 20 C -0.014 4.014 21 N -0.278 5.278 22 C 0.146 3.854 23 N -0.383 5.383 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.254 0.746 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.350 -8.383 -4.229 13.975 hybrid contribution 0.634 0.611 0.732 1.145 sum -9.716 -7.772 -3.497 12.924 Atomic orbital electron populations 1.20642 0.87317 1.03911 1.03449 1.20436 0.98988 0.91188 1.10095 1.21494 0.91812 0.98908 0.93498 1.19511 0.94502 0.93042 1.08381 1.18393 0.95241 0.94560 0.96438 1.20631 1.04543 0.94054 1.02225 1.21001 0.95752 0.97184 0.98437 1.21229 1.00966 1.00153 0.96100 1.17917 0.92319 0.90797 0.93508 1.19654 1.16273 0.93796 1.22845 0.91459 1.26669 1.01521 0.94554 0.94712 1.69831 1.35945 1.01410 1.36906 0.85192 0.76993 0.78786 0.78707 1.18090 1.18608 1.18985 1.18176 1.02467 0.90529 0.95488 1.91229 1.93872 1.62455 1.67178 1.22309 0.99141 0.86594 0.93353 1.67085 1.07170 1.31491 1.22099 1.18524 0.87932 0.87879 0.91045 1.42128 1.09381 1.03953 1.82849 0.89748 0.90563 0.90076 0.83613 0.85154 0.85310 0.86751 0.89616 0.84375 0.74617 0.76292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.59 71.23 0.68 -0.88 16 2 C -0.20 -5.34 5.91 -19.67 -0.12 -5.46 16 3 C -0.03 -1.03 9.33 22.65 0.21 -0.82 16 4 C -0.15 -5.94 5.31 -19.94 -0.11 -6.04 16 5 C -0.04 -2.04 5.49 -20.05 -0.11 -2.15 16 6 C -0.20 -8.13 9.53 22.65 0.22 -7.91 16 7 C -0.11 -4.60 10.01 22.19 0.22 -4.37 16 8 C -0.16 -8.45 8.69 22.75 0.20 -8.25 16 9 C 0.06 3.19 5.58 -21.27 -0.12 3.08 16 10 C -0.50 -27.90 8.78 23.44 0.21 -27.70 16 11 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 12 C 0.04 2.11 5.14 85.25 0.44 2.55 16 13 N -0.82 -41.90 10.96 21.82 0.24 -41.66 16 14 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 15 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 16 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 18 C -0.05 -2.45 7.17 23.10 0.17 -2.29 16 19 F -0.17 -9.05 15.37 44.97 0.69 -8.36 16 20 C 0.14 5.64 10.04 84.93 0.85 6.50 16 21 N -0.56 -19.91 10.38 -192.40 -2.00 -21.91 16 22 C 0.39 11.01 7.73 133.07 1.03 12.04 16 23 N -0.84 -15.53 8.98 -55.39 -0.50 -16.03 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.08 0.96 6.53 -2.39 -0.02 0.94 16 27 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.13 4.53 8.04 -2.91 -0.02 4.50 16 29 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.11 6.01 6.16 -2.91 -0.02 6.00 16 31 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 32 H 0.14 5.71 7.80 -2.91 -0.02 5.69 16 33 H 0.42 4.96 6.78 -92.71 -0.63 4.33 16 34 H 0.41 6.82 8.95 -92.71 -0.83 5.99 16 Total: -1.00 -65.56 297.53 3.94 -61.62 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.29 Total: 27.33 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 3.77 Total: -41.72 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.25 Total: -79.59 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.69 Total: -8.36 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -65.56 3.94 -61.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536217.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.269 kcal (2) G-P(sol) polarization free energy of solvation -65.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds