Wall clock time and date at job start Mon Mar 30 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37968 * 120.37319 * 2 1 4 4 C 1.40222 * 118.37978 * 180.23906 * 3 2 1 5 5 C 1.47893 * 120.47705 * 179.75270 * 4 3 2 6 6 C 1.40079 * 119.86588 * 359.74821 * 5 4 3 7 7 C 1.36157 * 120.17759 * 179.97438 * 6 5 4 8 8 C 1.40957 * 119.90621 * 359.97438 * 7 6 5 9 9 C 1.40925 * 120.13322 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99980 * 204.82832 * 9 8 7 11 11 C 1.39960 * 119.99966 * 24.82563 * 9 8 7 12 12 N 1.30851 * 119.99895 * 17.88242 * 11 9 8 13 13 Si 1.86800 * 119.99908 * 197.87672 * 11 9 8 14 14 H 1.48496 * 109.47136 * 60.00388 * 13 11 9 15 15 H 1.48501 * 109.46996 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47262 * 300.00288 * 13 11 9 17 17 C 1.41196 * 119.73839 * 359.74822 * 8 7 6 18 18 F 1.35096 * 120.09092 * 180.27531 * 17 8 7 19 19 C 1.36523 * 119.81315 * 0.52498 * 17 8 7 20 20 C 1.39546 * 119.04291 * 359.48209 * 4 3 2 21 21 N 1.31685 * 120.64691 * 0.30003 * 20 4 3 22 22 C 1.32549 * 121.77117 * 359.97192 * 21 20 4 23 23 N 1.38743 * 119.54597 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47217 * 270.23737 * 1 2 3 25 25 H 1.09004 * 109.47108 * 30.23958 * 1 2 3 26 26 H 1.09000 * 109.46886 * 150.23455 * 1 2 3 27 27 H 1.08001 * 120.81003 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.91360 * 359.97438 * 6 5 4 29 29 H 1.07999 * 120.04780 * 179.97438 * 7 6 5 30 30 H 0.97004 * 119.99770 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.95082 * 179.75602 * 19 17 8 32 32 H 1.07998 * 119.67077 * 180.27039 * 20 4 3 33 33 H 0.96995 * 120.00361 * 359.97438 * 23 22 21 34 34 H 0.96999 * 119.99950 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1903 0.0000 4 6 3.6060 1.1415 -0.0051 5 6 4.4000 2.3893 -0.0109 6 6 3.7496 3.6299 -0.0165 7 6 4.4743 4.7826 -0.0213 8 6 5.8828 4.7272 -0.0200 9 6 6.6376 5.9173 -0.0254 10 1 7.6439 5.9167 -0.4175 11 6 6.0830 7.1000 0.4771 12 7 5.0333 7.0507 1.2567 13 14 6.8416 8.7488 0.0350 14 1 6.8032 8.9323 -1.4381 15 1 6.0742 9.8383 0.6902 16 1 8.2508 8.7865 0.5020 17 6 6.5344 3.4747 -0.0084 18 9 7.8840 3.4134 -0.0014 19 6 5.7969 2.3258 -0.0093 20 6 4.2406 -0.1012 0.0010 21 7 3.5369 -1.2143 0.0055 22 6 2.2115 -1.2020 0.0050 23 7 1.5162 -2.4026 0.0105 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6841 2.1366 0.0004 28 1 2.6704 3.6723 -0.0171 29 1 3.9707 5.7380 -0.0260 30 1 4.6492 7.8704 1.6053 31 1 6.2931 1.3665 -0.0044 32 1 5.3195 -0.1506 0.0015 33 1 2.0000 -3.2433 0.0142 34 1 0.5462 -2.4013 0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245536323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:32 Heat of formation + Delta-G solvation = -3.910400 kcal Electronic energy + Delta-G solvation = -19493.388192 eV Core-core repulsion = 16304.481597 eV Total energy + Delta-G solvation = -3188.906595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.29765 -39.90881 -37.52017 -34.90248 -33.81227 -33.11298 -30.91690 -29.42705 -28.55349 -26.80327 -25.09657 -22.86754 -22.24531 -20.64530 -19.99574 -17.76136 -17.21772 -17.05468 -16.12531 -15.38531 -14.94309 -14.48285 -14.29649 -14.15844 -14.05343 -13.76251 -13.46393 -12.81814 -12.68650 -12.53309 -12.45824 -11.97672 -11.92583 -11.56694 -11.29856 -11.18578 -10.96976 -10.70018 -10.23915 -9.92890 -9.83841 -9.43700 -9.12249 -8.94932 -8.02887 -7.57701 -7.07727 -6.84480 -4.50057 1.52347 1.73685 2.69482 2.82063 2.95435 2.98497 3.12329 3.75861 3.79006 4.21354 4.59055 4.93738 5.11541 5.30674 5.40290 5.43912 5.62133 5.66420 5.70844 5.89806 5.97741 6.03675 6.29823 6.33428 6.46917 6.68486 6.83645 6.93174 7.01729 7.09675 7.38482 7.47908 7.52465 7.72141 7.83536 7.88475 7.94811 8.35806 8.51936 8.60937 8.69076 9.88712 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.004241 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.386058 B = 6599.987380 C = 7358.798263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.197 4.197 3 C -0.057 4.057 4 C -0.080 4.080 5 C -0.166 4.166 6 C -0.085 4.085 7 C -0.153 4.153 8 C 0.092 3.908 9 C -0.437 4.437 10 H 0.087 0.913 11 C 0.074 3.926 12 N -0.775 5.775 13 Si 0.916 3.084 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.262 1.262 17 C -0.029 4.029 18 F -0.163 7.163 19 C -0.099 4.099 20 C 0.116 3.884 21 N -0.535 5.535 22 C 0.366 3.634 23 N -0.861 5.861 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.287 0.713 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.397 0.603 34 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -7.499 -1.565 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C -0.083 4.083 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.104 4.104 7 C -0.172 4.172 8 C 0.088 3.912 9 C -0.465 4.465 10 H 0.105 0.895 11 C -0.147 4.147 12 N -0.398 5.398 13 Si 0.740 3.260 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.186 1.186 17 C -0.049 4.049 18 F -0.142 7.142 19 C -0.119 4.119 20 C -0.041 4.041 21 N -0.251 5.251 22 C 0.131 3.869 23 N -0.408 5.408 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.169 0.831 33 H 0.226 0.774 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.545 -8.086 -1.401 11.148 hybrid contribution -0.066 1.208 -0.036 1.210 sum -7.611 -6.878 -1.437 10.359 Atomic orbital electron populations 1.20528 0.91223 1.02096 1.01689 1.19978 0.96360 0.92541 1.11441 1.21276 0.93310 0.97106 0.96582 1.19584 0.92944 0.94112 1.01821 1.17605 0.91131 0.90750 1.17327 1.20517 0.97768 0.92093 1.00006 1.20816 0.92937 0.97453 1.06018 1.17719 0.92880 0.90837 0.89748 1.19615 1.01244 0.92380 1.33262 0.89536 1.26023 0.94340 1.01859 0.92428 1.69814 1.18324 1.31320 1.20357 0.86210 0.80175 0.79396 0.80235 1.18436 1.20003 1.18618 1.17401 0.76042 0.94381 1.17090 1.91284 1.30339 1.97261 1.95350 1.20279 0.93401 0.95970 1.02213 1.22474 0.99247 0.86255 0.96127 1.67001 1.05731 1.32385 1.20031 1.18044 0.88350 0.85987 0.94545 1.42038 1.08350 1.05000 1.85373 0.91783 0.91504 0.92471 0.85153 0.88524 0.85633 0.90148 0.87721 0.83056 0.77441 0.76846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.58 36.01 0.34 -0.70 16 2 C -0.20 -2.92 5.91 -104.32 -0.62 -3.54 16 3 C -0.06 -0.96 9.20 -38.94 -0.36 -1.32 16 4 C -0.08 -1.53 5.90 -104.71 -0.62 -2.15 16 5 C -0.17 -3.57 5.90 -104.65 -0.62 -4.19 16 6 C -0.09 -1.87 9.37 -39.64 -0.37 -2.24 16 7 C -0.15 -3.72 8.62 -39.30 -0.34 -4.06 16 8 C 0.09 2.38 5.58 -106.73 -0.60 1.78 16 9 C -0.44 -11.24 8.75 -37.92 -0.33 -11.57 16 10 H 0.09 2.19 7.73 -52.48 -0.41 1.78 16 11 C 0.07 1.76 5.13 -17.32 -0.09 1.67 16 12 N -0.77 -18.69 10.96 55.55 0.61 -18.08 16 13 Si 0.92 17.64 29.60 -169.99 -5.03 12.61 16 14 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 15 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 16 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 17 C -0.03 -0.72 7.26 -39.08 -0.28 -1.01 16 18 F -0.16 -4.05 16.70 2.25 0.04 -4.01 16 19 C -0.10 -2.23 9.34 -39.60 -0.37 -2.60 16 20 C 0.12 2.12 10.60 -17.13 -0.18 1.94 16 21 N -0.54 -9.38 10.37 -12.10 -0.13 -9.51 16 22 C 0.37 5.65 7.73 -155.07 -1.20 4.45 16 23 N -0.86 -9.58 8.97 31.14 0.28 -9.30 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 27 H 0.13 2.03 6.29 -52.49 -0.33 1.70 16 28 H 0.10 1.85 6.23 -52.49 -0.33 1.53 16 29 H 0.13 3.09 6.17 -52.49 -0.32 2.76 16 30 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 31 H 0.10 2.08 6.19 -52.48 -0.32 1.75 16 32 H 0.15 2.58 6.19 -52.49 -0.32 2.26 16 33 H 0.40 3.97 8.95 -40.82 -0.37 3.60 16 34 H 0.40 3.37 6.78 -40.82 -0.28 3.09 16 LS Contribution 292.37 15.07 4.41 4.41 Total: -1.00 -27.90 292.37 -8.44 -36.34 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.00 Total: 11.08 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -5.62 Total: -23.54 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.76 Total: -36.89 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.90 -8.44 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.432 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds