Wall clock time and date at job start Mon Mar 30 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37968 * 120.37319 * 2 1 4 4 C 1.40222 * 118.37978 * 180.23906 * 3 2 1 5 5 C 1.47893 * 120.47705 * 179.75270 * 4 3 2 6 6 C 1.40079 * 119.86588 * 359.74821 * 5 4 3 7 7 C 1.36157 * 120.17759 * 179.97438 * 6 5 4 8 8 C 1.40957 * 119.90621 * 359.97438 * 7 6 5 9 9 C 1.40925 * 120.13322 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99980 * 204.82832 * 9 8 7 11 11 C 1.39960 * 119.99966 * 24.82563 * 9 8 7 12 12 N 1.30851 * 119.99895 * 17.88242 * 11 9 8 13 13 Si 1.86800 * 119.99908 * 197.87672 * 11 9 8 14 14 H 1.48496 * 109.47136 * 60.00388 * 13 11 9 15 15 H 1.48501 * 109.46996 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47262 * 300.00288 * 13 11 9 17 17 C 1.41196 * 119.73839 * 359.74822 * 8 7 6 18 18 F 1.35096 * 120.09092 * 180.27531 * 17 8 7 19 19 C 1.36523 * 119.81315 * 0.52498 * 17 8 7 20 20 C 1.39546 * 119.04291 * 359.48209 * 4 3 2 21 21 N 1.31685 * 120.64691 * 0.30003 * 20 4 3 22 22 C 1.32549 * 121.77117 * 359.97192 * 21 20 4 23 23 N 1.38743 * 119.54597 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47217 * 270.23737 * 1 2 3 25 25 H 1.09004 * 109.47108 * 30.23958 * 1 2 3 26 26 H 1.09000 * 109.46886 * 150.23455 * 1 2 3 27 27 H 1.08001 * 120.81003 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.91360 * 359.97438 * 6 5 4 29 29 H 1.07999 * 120.04780 * 179.97438 * 7 6 5 30 30 H 0.97004 * 119.99770 * 179.97438 * 12 11 9 31 31 H 1.08003 * 119.95082 * 179.75602 * 19 17 8 32 32 H 1.07998 * 119.67077 * 180.27039 * 20 4 3 33 33 H 0.96995 * 120.00361 * 359.97438 * 23 22 21 34 34 H 0.96999 * 119.99950 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.1903 0.0000 4 6 3.6060 1.1415 -0.0051 5 6 4.4000 2.3893 -0.0109 6 6 3.7496 3.6299 -0.0165 7 6 4.4743 4.7826 -0.0213 8 6 5.8828 4.7272 -0.0200 9 6 6.6376 5.9173 -0.0254 10 1 7.6439 5.9167 -0.4175 11 6 6.0830 7.1000 0.4771 12 7 5.0333 7.0507 1.2567 13 14 6.8416 8.7488 0.0350 14 1 6.8032 8.9323 -1.4381 15 1 6.0742 9.8383 0.6902 16 1 8.2508 8.7865 0.5020 17 6 6.5344 3.4747 -0.0084 18 9 7.8840 3.4134 -0.0014 19 6 5.7969 2.3258 -0.0093 20 6 4.2406 -0.1012 0.0010 21 7 3.5369 -1.2143 0.0055 22 6 2.2115 -1.2020 0.0050 23 7 1.5162 -2.4026 0.0105 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6841 2.1366 0.0004 28 1 2.6704 3.6723 -0.0171 29 1 3.9707 5.7380 -0.0260 30 1 4.6492 7.8704 1.6053 31 1 6.2931 1.3665 -0.0044 32 1 5.3195 -0.1506 0.0015 33 1 2.0000 -3.2433 0.0142 34 1 0.5462 -2.4013 0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245536323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:32 Heat of formation + Delta-G solvation = -19.016036 kcal Electronic energy + Delta-G solvation = -19494.043221 eV Core-core repulsion = 16304.481597 eV Total energy + Delta-G solvation = -3189.561625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.22350 -41.21857 -39.24115 -36.34924 -35.30880 -34.35050 -32.44321 -31.18805 -30.07428 -27.97185 -26.76404 -24.22053 -23.84076 -22.28699 -21.55899 -19.48084 -18.49385 -18.29338 -17.83550 -17.05423 -16.52528 -16.09332 -15.99958 -15.60389 -15.42620 -15.24677 -14.83269 -14.37547 -14.03664 -13.77960 -13.70966 -13.61964 -13.33043 -13.14756 -12.85535 -12.79207 -12.46756 -12.16059 -11.74473 -11.64199 -11.53979 -11.09343 -10.44635 -10.30273 -9.59733 -9.38003 -8.79279 -8.31320 -6.36406 0.07681 0.43472 0.91214 1.14732 1.37645 1.49221 1.56648 2.17003 2.58170 2.73059 3.09188 3.58978 3.70336 3.90478 4.04650 4.11954 4.25070 4.29877 4.40217 4.59126 4.66133 4.85843 4.87751 4.97968 5.09149 5.16938 5.24219 5.27484 5.49067 5.57481 5.62800 5.86352 6.00272 6.09510 6.13328 6.48145 6.50791 6.65040 6.69553 6.84711 7.43366 8.17885 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.033270 B = 0.004241 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.386058 B = 6599.987380 C = 7358.798263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.196 4.196 3 C -0.056 4.056 4 C -0.115 4.115 5 C -0.148 4.148 6 C -0.088 4.088 7 C -0.165 4.165 8 C 0.060 3.940 9 C -0.483 4.483 10 H 0.073 0.927 11 C 0.040 3.960 12 N -0.805 5.805 13 Si 0.986 3.014 14 H -0.258 1.258 15 H -0.259 1.259 16 H -0.263 1.263 17 C -0.060 4.060 18 F -0.171 7.171 19 C -0.107 4.107 20 C 0.114 3.886 21 N -0.556 5.556 22 C 0.371 3.629 23 N -0.840 5.840 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.143 0.857 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.297 0.703 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.406 0.594 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 -8.932 -1.673 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.203 4.203 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.150 4.150 6 C -0.107 4.107 7 C -0.184 4.184 8 C 0.057 3.943 9 C -0.511 4.511 10 H 0.092 0.908 11 C -0.178 4.178 12 N -0.429 5.429 13 Si 0.806 3.194 14 H -0.182 1.182 15 H -0.182 1.182 16 H -0.187 1.187 17 C -0.080 4.080 18 F -0.150 7.150 19 C -0.125 4.125 20 C -0.042 4.042 21 N -0.273 5.273 22 C 0.132 3.868 23 N -0.387 5.387 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.236 0.764 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -10.219 -9.571 -1.507 14.082 hybrid contribution 0.509 1.247 0.004 1.347 sum -9.710 -8.325 -1.503 12.878 Atomic orbital electron populations 1.20639 0.87861 1.03850 1.03124 1.20396 0.98704 0.91444 1.09712 1.21508 0.92489 0.98622 0.95534 1.19487 0.93942 0.93083 1.05496 1.17934 0.91034 0.91931 1.14071 1.20807 0.99217 0.91482 0.99149 1.20832 0.92591 0.98056 1.06969 1.18053 0.93882 0.91458 0.90899 1.19731 1.01344 0.93956 1.36057 0.90834 1.26779 0.94709 1.04663 0.91602 1.69825 1.19434 1.32690 1.20921 0.85183 0.79176 0.75101 0.79939 1.18198 1.18240 1.18729 1.17727 0.76057 0.95240 1.18941 1.91241 1.30855 1.97324 1.95573 1.20536 0.94023 0.96077 1.01910 1.22516 0.99643 0.86355 0.95723 1.67053 1.06909 1.31904 1.21437 1.18459 0.88064 0.87655 0.92586 1.42048 1.09270 1.04056 1.83324 0.90328 0.90578 0.90072 0.83985 0.85625 0.86418 0.89224 0.85673 0.82902 0.76437 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 9.58 71.24 0.68 -0.93 16 2 C -0.20 -5.10 5.91 -19.67 -0.12 -5.21 16 3 C -0.06 -1.75 9.20 22.69 0.21 -1.54 16 4 C -0.12 -4.25 5.90 -19.92 -0.12 -4.37 16 5 C -0.15 -6.35 5.90 -19.89 -0.12 -6.47 16 6 C -0.09 -3.88 9.37 22.23 0.21 -3.67 16 7 C -0.17 -8.31 8.62 22.45 0.19 -8.12 16 8 C 0.06 3.29 5.58 -21.23 -0.12 3.17 16 9 C -0.48 -26.25 8.75 23.35 0.20 -26.04 16 10 H 0.07 4.00 7.73 -2.91 -0.02 3.97 16 11 C 0.04 1.97 5.13 85.26 0.44 2.41 16 12 N -0.80 -39.90 10.96 21.83 0.24 -39.66 16 13 Si 0.99 36.93 29.60 68.60 2.03 38.96 16 14 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 15 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 16 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 17 C -0.06 -3.12 7.26 22.60 0.16 -2.95 16 18 F -0.17 -8.93 16.70 44.97 0.75 -8.17 16 19 C -0.11 -4.88 9.34 22.26 0.21 -4.67 16 20 C 0.11 4.03 10.60 85.03 0.90 4.93 16 21 N -0.56 -18.25 10.37 -192.20 -1.99 -20.24 16 22 C 0.37 10.14 7.73 133.15 1.03 11.17 16 23 N -0.84 -15.11 8.97 -55.40 -0.50 -15.61 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 26 H 0.08 0.96 6.55 -2.39 -0.02 0.94 16 27 H 0.14 4.00 6.29 -2.91 -0.02 3.98 16 28 H 0.13 4.66 6.23 -2.91 -0.02 4.64 16 29 H 0.12 6.01 6.17 -2.91 -0.02 6.00 16 30 H 0.30 13.06 8.30 -92.71 -0.77 12.30 16 31 H 0.13 5.04 6.19 -2.91 -0.02 5.03 16 32 H 0.15 5.15 6.19 -2.91 -0.02 5.13 16 33 H 0.41 6.51 8.95 -92.71 -0.83 5.68 16 34 H 0.42 4.89 6.78 -92.71 -0.63 4.26 16 Total: -1.00 -62.83 292.37 4.02 -58.81 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.27 Total: 28.21 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.77 Total: -42.30 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -2.25 Total: -75.51 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.75 Total: -8.17 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -62.83 4.02 -58.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.796 kcal (2) G-P(sol) polarization free energy of solvation -62.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds