Wall clock time and date at job start Mon Mar 30 2020 01:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37945 * 120.37123 * 2 1 4 4 C 1.40271 * 118.37613 * 179.78982 * 3 2 1 5 5 C 1.47777 * 120.48596 * 180.23805 * 4 3 2 6 6 C 1.39127 * 120.32635 * 309.97877 * 5 4 3 7 7 C 1.38330 * 119.95655 * 179.78608 * 6 5 4 8 8 F 1.35092 * 119.69316 * 180.22904 * 7 6 5 9 9 C 1.39243 * 120.61624 * 0.46911 * 7 6 5 10 10 C 1.36331 * 120.66776 * 359.78330 * 9 7 6 11 11 C 1.40791 * 120.02104 * 359.97438 * 10 9 7 12 12 C 1.40793 * 120.30753 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00101 * 153.47178 * 12 11 10 14 14 C 1.40009 * 119.99681 * 333.46457 * 12 11 10 15 15 N 1.30823 * 119.99884 * 343.52642 * 14 12 11 16 16 Si 1.86793 * 119.99929 * 163.52993 * 14 12 11 17 17 H 1.48510 * 109.47304 * 94.63756 * 16 14 12 18 18 H 1.48492 * 109.47283 * 214.63813 * 16 14 12 19 19 H 1.48501 * 109.47354 * 334.64142 * 16 14 12 20 20 C 1.39591 * 119.03230 * 0.49000 * 4 3 2 21 21 N 1.31679 * 120.63993 * 359.74921 * 20 4 3 22 22 C 1.32549 * 121.77365 * 0.02562 * 21 20 4 23 23 N 1.38757 * 119.53920 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47051 * 269.72306 * 1 2 3 25 25 H 1.08991 * 109.47369 * 149.71768 * 1 2 3 26 26 H 1.09008 * 109.47138 * 29.71679 * 1 2 3 27 27 H 1.07998 * 120.81422 * 0.02801 * 3 2 1 28 28 H 1.08002 * 120.02663 * 0.02562 * 6 5 4 29 29 H 1.08007 * 119.66851 * 179.76070 * 9 7 6 30 30 H 1.08004 * 119.98712 * 179.97438 * 10 9 7 31 31 H 0.97006 * 119.99750 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.67731 * 179.73414 * 20 4 3 33 33 H 0.97002 * 119.99585 * 179.97438 * 23 22 21 34 34 H 0.96996 * 120.00191 * 359.96936 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1901 0.0000 4 6 3.6063 1.1413 0.0045 5 6 4.3999 2.3879 0.0100 6 6 4.1293 3.3970 -0.9088 7 6 4.8741 4.5626 -0.8939 8 9 4.6037 5.5408 -1.7855 9 6 5.9031 4.7350 0.0282 10 6 6.1933 3.7606 0.9365 11 6 5.4495 2.5653 0.9492 12 6 5.7444 1.5549 1.8842 13 1 4.9732 0.8661 2.1963 14 6 7.0374 1.4429 2.4094 15 7 8.0381 2.0423 1.8172 16 14 7.3337 0.4374 3.9555 17 1 7.7412 -0.9403 3.5796 18 1 8.4103 1.0703 4.7588 19 1 6.0849 0.3828 4.7573 20 6 4.2409 -0.1020 -0.0016 21 7 3.5369 -1.2148 -0.0065 22 6 2.2114 -1.2021 -0.0064 23 7 1.5158 -2.4027 -0.0112 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8874 -0.5182 26 1 -0.3634 0.8926 -0.5095 27 1 1.6840 2.1364 0.0005 28 1 3.3358 3.2720 -1.6307 29 1 6.4773 5.6497 0.0236 30 1 6.9941 3.9058 1.6465 31 1 8.9339 1.9651 2.1813 32 1 5.3198 -0.1517 -0.0025 33 1 0.5458 -2.4011 -0.0107 34 1 1.9995 -3.2434 -0.0150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245536926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:22 Heat of formation + Delta-G solvation = -4.984882 kcal Electronic energy + Delta-G solvation = -19992.925428 eV Core-core repulsion = 16803.972240 eV Total energy + Delta-G solvation = -3188.953188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.50399 -39.73440 -37.51026 -34.46057 -33.76448 -32.97454 -31.03596 -29.54753 -27.98479 -26.49484 -25.13230 -22.72260 -21.96616 -21.02156 -19.75244 -17.51731 -17.14388 -16.88453 -16.18132 -15.46347 -14.75229 -14.41642 -14.22107 -14.20739 -13.99099 -13.65535 -13.35886 -12.79660 -12.56663 -12.29486 -12.23509 -12.12814 -12.01111 -11.34810 -11.32508 -11.12321 -10.94668 -10.48282 -10.28239 -9.88617 -9.61940 -9.29904 -8.97083 -8.83150 -7.86375 -7.42784 -7.05238 -6.83441 -4.47571 1.84113 1.96165 2.59211 2.85957 3.00970 3.03764 3.09593 3.82602 3.93228 4.39729 4.54902 5.14366 5.25341 5.38512 5.51983 5.69145 5.71823 5.78415 5.82621 6.00029 6.03570 6.14041 6.39407 6.51030 6.68508 6.82763 6.96094 6.97168 7.06262 7.27787 7.33781 7.58175 7.69155 7.75856 7.82499 7.90126 8.06168 8.40341 8.66452 8.73193 8.82630 9.98257 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.008327 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.156871 B = 3361.785235 C = 5323.464403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.213 4.213 3 C -0.046 4.046 4 C -0.086 4.086 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.047 4.047 8 F -0.174 7.174 9 C -0.125 4.125 10 C -0.136 4.136 11 C 0.122 3.878 12 C -0.444 4.444 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.784 5.784 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.259 1.259 20 C 0.163 3.837 21 N -0.545 5.545 22 C 0.377 3.623 23 N -0.862 5.862 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.285 0.715 32 H 0.163 0.837 33 H 0.400 0.600 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -4.511 -0.335 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.220 4.220 3 C -0.072 4.072 4 C -0.090 4.090 5 C -0.155 4.155 6 C -0.117 4.117 7 C -0.066 4.066 8 F -0.154 7.154 9 C -0.144 4.144 10 C -0.155 4.155 11 C 0.119 3.881 12 C -0.472 4.472 13 H 0.102 0.898 14 C -0.143 4.143 15 N -0.408 5.408 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.183 1.183 20 C 0.005 3.995 21 N -0.261 5.261 22 C 0.142 3.858 23 N -0.407 5.407 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.180 0.820 33 H 0.230 0.770 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.443 -5.209 -0.354 9.092 hybrid contribution -0.322 0.271 0.519 0.668 sum -7.765 -4.939 0.164 9.204 Atomic orbital electron populations 1.20487 0.91469 1.01814 1.01451 1.19899 0.96154 0.92596 1.13346 1.21344 0.93444 0.96798 0.95610 1.19385 0.92227 0.94298 1.03088 1.18156 1.03609 0.93372 1.00330 1.20516 0.99164 0.92699 0.99312 1.17169 1.04069 0.88635 0.96773 1.91283 1.94142 1.62146 1.67801 1.20487 0.97208 0.99735 0.96993 1.20910 1.02199 0.92403 0.99978 1.17583 0.88983 0.91935 0.89637 1.19551 0.95448 1.12607 1.19636 0.89750 1.25960 0.95730 0.95141 0.97446 1.69793 1.00863 1.34536 1.35573 0.86301 0.79276 0.80097 0.81308 1.19195 1.19889 1.18298 1.22786 0.99856 0.85746 0.91075 1.67137 1.05419 1.32653 1.20901 1.18131 0.88586 0.85858 0.93256 1.42071 1.08304 1.05108 1.85247 0.92028 0.92658 0.91786 0.85744 0.88069 0.88190 0.85562 0.90410 0.81990 0.76953 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.58 36.01 0.34 -0.77 16 2 C -0.21 -3.45 5.91 -104.32 -0.62 -4.06 16 3 C -0.05 -0.84 9.35 -38.93 -0.36 -1.21 16 4 C -0.09 -1.79 4.93 -104.73 -0.52 -2.31 16 5 C -0.15 -3.49 5.54 -104.25 -0.58 -4.07 16 6 C -0.10 -2.18 9.51 -39.22 -0.37 -2.56 16 7 C -0.05 -1.08 7.30 -39.17 -0.29 -1.36 16 8 F -0.17 -3.90 17.26 2.25 0.04 -3.86 16 9 C -0.12 -2.88 9.94 -39.89 -0.40 -3.27 16 10 C -0.14 -3.29 8.61 -39.30 -0.34 -3.63 16 11 C 0.12 2.99 5.56 -106.54 -0.59 2.39 16 12 C -0.44 -10.77 7.12 -37.95 -0.27 -11.04 16 13 H 0.08 2.05 6.63 -52.49 -0.35 1.71 16 14 C 0.08 1.78 5.15 -17.32 -0.09 1.70 16 15 N -0.78 -18.67 11.01 55.55 0.61 -18.06 16 16 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C 0.16 3.41 9.18 -17.11 -0.16 3.25 16 21 N -0.54 -10.64 10.37 -12.09 -0.13 -10.77 16 22 C 0.38 6.37 7.73 -155.06 -1.20 5.18 16 23 N -0.86 -10.70 8.97 31.14 0.28 -10.42 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.53 6.55 -51.93 -0.34 0.19 16 26 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 27 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 28 H 0.10 2.06 8.05 -52.49 -0.42 1.64 16 29 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 30 H 0.13 3.11 6.25 -52.48 -0.33 2.78 16 31 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 32 H 0.16 3.54 7.31 -52.49 -0.38 3.15 16 33 H 0.40 3.82 6.78 -40.82 -0.28 3.54 16 34 H 0.40 4.51 8.95 -40.82 -0.37 4.14 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -26.73 295.09 -8.50 -35.23 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -3.29 Total: 12.40 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -5.43 Total: -21.77 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.77 Total: -39.25 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.73 -8.50 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.241 kcal (2) G-P(sol) polarization free energy of solvation -26.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds