Wall clock time and date at job start Mon Mar 30 2020 01:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37945 * 120.37123 * 2 1 4 4 C 1.40271 * 118.37613 * 179.78982 * 3 2 1 5 5 C 1.47777 * 120.48596 * 180.23805 * 4 3 2 6 6 C 1.39127 * 120.32635 * 309.97877 * 5 4 3 7 7 C 1.38330 * 119.95655 * 179.78608 * 6 5 4 8 8 F 1.35092 * 119.69316 * 180.22904 * 7 6 5 9 9 C 1.39243 * 120.61624 * 0.46911 * 7 6 5 10 10 C 1.36331 * 120.66776 * 359.78330 * 9 7 6 11 11 C 1.40791 * 120.02104 * 359.97438 * 10 9 7 12 12 C 1.40793 * 120.30753 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00101 * 153.47178 * 12 11 10 14 14 C 1.40009 * 119.99681 * 333.46457 * 12 11 10 15 15 N 1.30823 * 119.99884 * 343.52642 * 14 12 11 16 16 Si 1.86793 * 119.99929 * 163.52993 * 14 12 11 17 17 H 1.48510 * 109.47304 * 94.63756 * 16 14 12 18 18 H 1.48492 * 109.47283 * 214.63813 * 16 14 12 19 19 H 1.48501 * 109.47354 * 334.64142 * 16 14 12 20 20 C 1.39591 * 119.03230 * 0.49000 * 4 3 2 21 21 N 1.31679 * 120.63993 * 359.74921 * 20 4 3 22 22 C 1.32549 * 121.77365 * 0.02562 * 21 20 4 23 23 N 1.38757 * 119.53920 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47051 * 269.72306 * 1 2 3 25 25 H 1.08991 * 109.47369 * 149.71768 * 1 2 3 26 26 H 1.09008 * 109.47138 * 29.71679 * 1 2 3 27 27 H 1.07998 * 120.81422 * 0.02801 * 3 2 1 28 28 H 1.08002 * 120.02663 * 0.02562 * 6 5 4 29 29 H 1.08007 * 119.66851 * 179.76070 * 9 7 6 30 30 H 1.08004 * 119.98712 * 179.97438 * 10 9 7 31 31 H 0.97006 * 119.99750 * 179.97438 * 15 14 12 32 32 H 1.07999 * 119.67731 * 179.73414 * 20 4 3 33 33 H 0.97002 * 119.99585 * 179.97438 * 23 22 21 34 34 H 0.96996 * 120.00191 * 359.96936 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1901 0.0000 4 6 3.6063 1.1413 0.0045 5 6 4.3999 2.3879 0.0100 6 6 4.1293 3.3970 -0.9088 7 6 4.8741 4.5626 -0.8939 8 9 4.6037 5.5408 -1.7855 9 6 5.9031 4.7350 0.0282 10 6 6.1933 3.7606 0.9365 11 6 5.4495 2.5653 0.9492 12 6 5.7444 1.5549 1.8842 13 1 4.9732 0.8661 2.1963 14 6 7.0374 1.4429 2.4094 15 7 8.0381 2.0423 1.8172 16 14 7.3337 0.4374 3.9555 17 1 7.7412 -0.9403 3.5796 18 1 8.4103 1.0703 4.7588 19 1 6.0849 0.3828 4.7573 20 6 4.2409 -0.1020 -0.0016 21 7 3.5369 -1.2148 -0.0065 22 6 2.2114 -1.2021 -0.0064 23 7 1.5158 -2.4027 -0.0112 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8874 -0.5182 26 1 -0.3634 0.8926 -0.5095 27 1 1.6840 2.1364 0.0005 28 1 3.3358 3.2720 -1.6307 29 1 6.4773 5.6497 0.0236 30 1 6.9941 3.9058 1.6465 31 1 8.9339 1.9651 2.1813 32 1 5.3198 -0.1517 -0.0025 33 1 0.5458 -2.4011 -0.0107 34 1 1.9995 -3.2434 -0.0150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245536926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:21 Heat of formation + Delta-G solvation = -18.637046 kcal Electronic energy + Delta-G solvation = -19993.517431 eV Core-core repulsion = 16803.972240 eV Total energy + Delta-G solvation = -3189.545191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.30471 -41.16084 -39.23302 -35.80009 -35.52561 -34.31746 -32.55267 -31.34452 -29.47154 -27.76764 -26.92490 -24.20571 -23.46980 -22.78293 -21.34988 -19.30448 -18.43204 -18.23661 -17.83762 -17.20239 -16.42345 -16.06982 -15.90176 -15.74699 -15.29956 -15.18925 -14.68740 -14.46292 -14.00778 -13.79329 -13.73195 -13.51042 -13.35717 -13.08467 -12.82617 -12.71664 -12.47752 -12.20753 -11.86786 -11.40818 -11.34018 -11.05721 -10.39210 -10.27658 -9.54125 -9.23944 -8.73821 -8.32741 -6.30692 0.31943 0.51563 0.81743 1.14812 1.38898 1.44884 1.51837 2.18409 2.62079 2.76725 3.07821 3.60054 3.80568 3.94065 4.12491 4.22173 4.28865 4.33190 4.38157 4.65419 4.76907 4.88072 4.94350 5.04441 5.13346 5.24423 5.27337 5.36617 5.47493 5.56704 5.77464 5.89459 5.94186 6.05069 6.26230 6.52530 6.57245 6.70401 6.85098 6.92393 7.49918 8.25348 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.008327 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.156871 B = 3361.785235 C = 5323.464403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.205 4.205 3 C -0.049 4.049 4 C -0.113 4.113 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.057 4.057 8 F -0.170 7.170 9 C -0.129 4.129 10 C -0.155 4.155 11 C 0.096 3.904 12 C -0.460 4.460 13 H 0.076 0.924 14 C 0.043 3.957 15 N -0.811 5.811 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.262 1.262 19 H -0.263 1.263 20 C 0.149 3.851 21 N -0.564 5.564 22 C 0.375 3.625 23 N -0.839 5.839 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.293 0.707 32 H 0.138 0.862 33 H 0.418 0.582 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -5.728 -0.132 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.211 4.211 3 C -0.074 4.074 4 C -0.118 4.118 5 C -0.151 4.151 6 C -0.120 4.120 7 C -0.077 4.077 8 F -0.150 7.150 9 C -0.148 4.148 10 C -0.174 4.174 11 C 0.093 3.907 12 C -0.488 4.488 13 H 0.094 0.906 14 C -0.174 4.174 15 N -0.436 5.436 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.008 4.008 21 N -0.282 5.282 22 C 0.137 3.863 23 N -0.387 5.387 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.251 0.749 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.708 -6.439 -0.163 11.650 hybrid contribution 0.224 0.551 0.378 0.705 sum -9.483 -5.888 0.215 11.165 Atomic orbital electron populations 1.20602 0.87772 1.03762 1.02957 1.20353 0.98660 0.91367 1.10762 1.21536 0.92336 0.98415 0.95143 1.19326 0.93474 0.93231 1.05783 1.18429 1.03003 0.94272 0.99435 1.20725 0.99543 0.92295 0.99449 1.17309 1.04310 0.89092 0.96983 1.91285 1.94112 1.61979 1.67593 1.20645 0.97391 1.00118 0.96644 1.20867 1.02706 0.93051 1.00761 1.17915 0.90015 0.92303 0.90470 1.19582 0.95919 1.12805 1.20504 0.90600 1.26633 0.95122 0.95977 0.99668 1.69824 1.01426 1.35565 1.36738 0.85366 0.79077 0.78673 0.77840 1.18983 1.18657 1.18665 1.22397 0.99065 0.86502 0.92801 1.67082 1.06955 1.32049 1.22096 1.18497 0.88027 0.87717 0.92057 1.42028 1.09187 1.04001 1.83462 0.90551 0.90094 0.90599 0.84383 0.86107 0.86490 0.86567 0.89646 0.84432 0.74877 0.76529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.58 71.24 0.68 -1.10 16 2 C -0.20 -6.04 5.91 -19.67 -0.12 -6.16 16 3 C -0.05 -1.71 9.35 22.69 0.21 -1.50 16 4 C -0.11 -4.79 4.93 -19.93 -0.10 -4.89 16 5 C -0.15 -6.99 5.54 -19.62 -0.11 -7.10 16 6 C -0.10 -4.52 9.51 22.51 0.21 -4.31 16 7 C -0.06 -2.64 7.30 22.53 0.16 -2.48 16 8 F -0.17 -7.50 17.26 44.97 0.78 -6.72 16 9 C -0.13 -6.03 9.94 22.07 0.22 -5.81 16 10 C -0.15 -7.76 8.61 22.45 0.19 -7.57 16 11 C 0.10 4.88 5.56 -21.11 -0.12 4.76 16 12 C -0.46 -23.12 7.12 23.32 0.17 -22.96 16 13 H 0.08 3.85 6.63 -2.91 -0.02 3.83 16 14 C 0.04 2.05 5.15 85.27 0.44 2.49 16 15 N -0.81 -39.72 11.01 21.84 0.24 -39.48 16 16 Si 0.97 37.01 29.59 68.60 2.03 39.04 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 C 0.15 6.39 9.18 85.04 0.78 7.17 16 21 N -0.56 -21.83 10.37 -192.16 -1.99 -23.82 16 22 C 0.38 11.83 7.73 133.15 1.03 12.86 16 23 N -0.84 -17.96 8.97 -55.38 -0.50 -18.46 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.14 6.55 -2.39 -0.02 1.12 16 26 H 0.08 1.32 8.09 -2.38 -0.02 1.30 16 27 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.12 4.81 8.05 -2.91 -0.02 4.79 16 29 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.12 5.97 6.25 -2.91 -0.02 5.96 16 31 H 0.29 12.95 8.30 -92.70 -0.77 12.18 16 32 H 0.14 6.42 7.31 -2.91 -0.02 6.40 16 33 H 0.42 6.07 6.78 -92.71 -0.63 5.44 16 34 H 0.41 7.94 8.95 -92.71 -0.83 7.11 16 Total: -1.00 -58.68 295.09 3.93 -54.75 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: -0.29 Total: 31.27 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.66 Total: -36.58 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -2.25 Total: -81.76 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.78 Total: -6.72 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -58.68 3.93 -54.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245536926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.114 kcal (2) G-P(sol) polarization free energy of solvation -58.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds