Wall clock time and date at job start Mon Mar 30 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38101 * 120.38971 * 2 1 4 4 C 1.39931 * 118.40172 * 180.21233 * 3 2 1 5 5 C 1.48374 * 120.45436 * 179.77796 * 4 3 2 6 6 C 1.39838 * 119.96833 * 359.74812 * 5 4 3 7 7 C 1.38229 * 120.42207 * 179.97438 * 6 5 4 8 8 C 1.38069 * 120.34531 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04077 * 179.97438 * 8 7 6 10 10 C 1.41047 * 119.92175 * 359.68762 * 8 7 6 11 11 C 1.41318 * 120.20716 * 180.32191 * 10 8 7 12 12 H 1.07995 * 119.99948 * 329.90975 * 11 10 8 13 13 C 1.39911 * 119.99882 * 149.91358 * 11 10 8 14 14 N 1.30862 * 120.00036 * 162.19713 * 13 11 10 15 15 Si 1.86797 * 120.00238 * 342.19665 * 13 11 10 16 16 H 1.48498 * 109.47320 * 95.43054 * 15 13 11 17 17 H 1.48498 * 109.47231 * 215.43348 * 15 13 11 18 18 H 1.48504 * 109.46938 * 335.43047 * 15 13 11 19 19 C 1.38680 * 119.96111 * 179.72286 * 5 4 3 20 20 C 1.39202 * 119.08830 * 359.51288 * 4 3 2 21 21 N 1.31789 * 120.68796 * 0.24298 * 20 4 3 22 22 C 1.32469 * 121.74597 * 0.02562 * 21 20 4 23 23 N 1.38937 * 119.57500 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.46947 * 270.28016 * 1 2 3 25 25 H 1.09001 * 109.46889 * 30.28121 * 1 2 3 26 26 H 1.09004 * 109.46701 * 150.28115 * 1 2 3 27 27 H 1.07999 * 120.79902 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.78563 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.82937 * 179.97438 * 7 6 5 30 30 H 0.96996 * 119.99998 * 180.02562 * 14 13 11 31 31 H 1.07994 * 120.17797 * 0.02924 * 19 5 4 32 32 H 1.08002 * 119.65904 * 180.22596 * 20 4 3 33 33 H 0.97005 * 119.99474 * 359.97438 * 23 22 21 34 34 H 0.97001 * 119.99813 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1913 0.0000 4 6 3.6041 1.1427 -0.0046 5 6 4.4000 2.3949 -0.0097 6 6 3.7524 3.6342 -0.0154 7 6 4.4847 4.8066 -0.0197 8 6 5.8648 4.7671 -0.0179 9 9 6.5744 5.9168 -0.0226 10 6 6.5330 3.5250 -0.0050 11 6 7.9454 3.4775 0.0037 12 1 8.5150 4.2648 -0.4675 13 6 8.6056 2.4106 0.6228 14 7 9.8616 2.1690 0.3458 15 14 7.6944 1.3308 1.8447 16 1 7.1712 0.1280 1.1484 17 1 8.6237 0.9125 2.9248 18 1 6.5638 2.0936 2.4323 19 6 5.7856 2.3349 -0.0084 20 6 4.2383 -0.0964 0.0014 21 7 3.5358 -1.2115 0.0065 22 6 2.2111 -1.2007 0.0055 23 7 1.5156 -2.4035 0.0115 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6852 2.1376 -0.0004 28 1 2.6731 3.6756 -0.0164 29 1 3.9746 5.7585 -0.0244 30 1 10.3192 1.4291 0.7746 31 1 6.2875 1.3787 -0.0041 32 1 5.3172 -0.1446 0.0017 33 1 2.0002 -3.2438 0.0160 34 1 0.5456 -2.4028 0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245538465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:23 Heat of formation + Delta-G solvation = -0.577633 kcal Electronic energy + Delta-G solvation = -19871.226336 eV Core-core repulsion = 16682.464260 eV Total energy + Delta-G solvation = -3188.762076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.41060 -40.16970 -37.72179 -34.87196 -33.83015 -33.27732 -31.17417 -30.61639 -27.96236 -26.72457 -25.30377 -23.00597 -22.59456 -21.23063 -19.76768 -17.69616 -17.52271 -17.21877 -16.43979 -15.41564 -15.15321 -14.63214 -14.48910 -14.37301 -14.19280 -14.00951 -13.24611 -12.97327 -12.88548 -12.84326 -12.60576 -12.03529 -11.99919 -11.77807 -11.65406 -11.20899 -10.89186 -10.75952 -10.26948 -9.99431 -9.82973 -9.39566 -9.24385 -9.12881 -8.16122 -7.86064 -7.05542 -6.90549 -4.59262 1.27824 1.52711 2.44227 2.61025 3.03240 3.15567 3.25788 3.59503 3.89069 4.06828 4.48348 4.76108 4.93437 5.11026 5.20490 5.25688 5.44441 5.47633 5.52090 5.65589 5.72283 5.88531 6.04286 6.17668 6.24966 6.40685 6.45155 6.71608 6.86279 7.00784 7.21406 7.30724 7.32631 7.47694 7.50761 7.62829 7.88960 8.23601 8.41582 8.46243 8.63553 9.96461 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.006337 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.340268 B = 4417.705930 C = 5611.522058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.207 4.207 3 C -0.032 4.032 4 C -0.125 4.125 5 C -0.009 4.009 6 C -0.211 4.211 7 C -0.110 4.110 8 C -0.009 4.009 9 F -0.156 7.156 10 C 0.068 3.932 11 C -0.437 4.437 12 H 0.096 0.904 13 C 0.086 3.914 14 N -0.798 5.798 15 Si 0.902 3.098 16 H -0.264 1.264 17 H -0.286 1.286 18 H -0.241 1.241 19 C -0.207 4.207 20 C 0.144 3.856 21 N -0.539 5.539 22 C 0.388 3.612 23 N -0.857 5.857 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.288 0.712 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.400 0.600 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.147 -6.414 0.759 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.214 4.214 3 C -0.057 4.057 4 C -0.130 4.130 5 C -0.010 4.010 6 C -0.230 4.230 7 C -0.130 4.130 8 C -0.029 4.029 9 F -0.135 7.135 10 C 0.065 3.935 11 C -0.464 4.464 12 H 0.114 0.886 13 C -0.134 4.134 14 N -0.421 5.421 15 Si 0.728 3.272 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.164 1.164 19 C -0.227 4.227 20 C -0.013 4.013 21 N -0.256 5.256 22 C 0.152 3.848 23 N -0.402 5.402 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.229 0.771 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.381 -7.250 0.773 16.124 hybrid contribution -0.581 0.134 0.476 0.762 sum -14.962 -7.116 1.248 16.615 Atomic orbital electron populations 1.20528 0.90834 1.02304 1.01833 1.20021 0.96644 0.92423 1.12275 1.21326 0.93087 0.97374 0.93915 1.19709 0.93332 0.94376 1.05556 1.18171 0.92395 0.90602 0.99843 1.20176 0.97621 0.90794 1.14431 1.20506 0.92101 0.98006 1.02342 1.17842 0.88698 0.81541 1.14841 1.91314 1.79290 1.48026 1.94897 1.17606 0.94119 0.89719 0.92081 1.19413 0.89787 1.06922 1.30323 0.88563 1.26141 0.94948 0.96028 0.96326 1.69686 1.11371 1.26064 1.34965 0.86454 0.80361 0.80255 0.80163 1.18973 1.21284 1.16384 1.20884 0.92098 0.97098 1.12576 1.22706 0.99833 0.86215 0.92570 1.67132 1.05711 1.32117 1.20596 1.18182 0.88420 0.86132 0.92101 1.42174 1.08560 1.05068 1.84437 0.91651 0.91357 0.92318 0.84654 0.87676 0.87348 0.90125 0.87171 0.82491 0.77105 0.76585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.58 36.01 0.34 -0.56 16 2 C -0.21 -2.82 5.91 -104.31 -0.62 -3.44 16 3 C -0.03 -0.49 9.20 -39.00 -0.36 -0.85 16 4 C -0.13 -2.33 5.89 -104.73 -0.62 -2.95 16 5 C -0.01 -0.19 5.87 -104.96 -0.62 -0.81 16 6 C -0.21 -4.13 9.44 -38.99 -0.37 -4.50 16 7 C -0.11 -2.29 9.99 -39.65 -0.40 -2.69 16 8 C -0.01 -0.22 7.31 -38.58 -0.28 -0.50 16 9 F -0.16 -3.81 16.76 2.25 0.04 -3.78 16 10 C 0.07 1.74 5.10 -106.79 -0.54 1.19 16 11 C -0.44 -11.86 9.25 -37.79 -0.35 -12.21 16 12 H 0.10 2.79 7.97 -52.49 -0.42 2.37 16 13 C 0.09 2.22 5.41 -17.34 -0.09 2.13 16 14 N -0.80 -20.97 13.93 55.55 0.77 -20.20 16 15 Si 0.90 20.34 24.52 -169.99 -4.17 16.17 16 16 H -0.26 -5.61 6.04 56.52 0.34 -5.26 16 17 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 19 C -0.21 -4.83 6.54 -38.55 -0.25 -5.09 16 20 C 0.14 2.71 10.59 -17.21 -0.18 2.53 16 21 N -0.54 -9.45 10.38 -12.17 -0.13 -9.57 16 22 C 0.39 5.69 7.73 -155.00 -1.20 4.49 16 23 N -0.86 -8.84 8.98 31.14 0.28 -8.56 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 27 H 0.14 1.81 6.30 -52.49 -0.33 1.48 16 28 H 0.11 1.72 6.24 -52.48 -0.33 1.39 16 29 H 0.11 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.11 2.53 2.98 -52.49 -0.16 2.38 16 32 H 0.16 3.04 5.52 -52.49 -0.29 2.75 16 33 H 0.40 3.75 8.95 -40.82 -0.37 3.38 16 34 H 0.40 2.98 6.78 -40.82 -0.28 2.71 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -28.92 286.25 -7.40 -36.32 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -2.98 Total: 8.54 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -5.53 Total: -23.24 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.93 Total: -38.33 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.17 Total: 16.17 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.92 -7.40 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245538465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.745 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds