Wall clock time and date at job start Mon Mar 30 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38101 * 120.38971 * 2 1 4 4 C 1.39931 * 118.40172 * 180.21233 * 3 2 1 5 5 C 1.48374 * 120.45436 * 179.77796 * 4 3 2 6 6 C 1.39838 * 119.96833 * 359.74812 * 5 4 3 7 7 C 1.38229 * 120.42207 * 179.97438 * 6 5 4 8 8 C 1.38069 * 120.34531 * 359.97438 * 7 6 5 9 9 F 1.35105 * 120.04077 * 179.97438 * 8 7 6 10 10 C 1.41047 * 119.92175 * 359.68762 * 8 7 6 11 11 C 1.41318 * 120.20716 * 180.32191 * 10 8 7 12 12 H 1.07995 * 119.99948 * 329.90975 * 11 10 8 13 13 C 1.39911 * 119.99882 * 149.91358 * 11 10 8 14 14 N 1.30862 * 120.00036 * 162.19713 * 13 11 10 15 15 Si 1.86797 * 120.00238 * 342.19665 * 13 11 10 16 16 H 1.48498 * 109.47320 * 95.43054 * 15 13 11 17 17 H 1.48498 * 109.47231 * 215.43348 * 15 13 11 18 18 H 1.48504 * 109.46938 * 335.43047 * 15 13 11 19 19 C 1.38680 * 119.96111 * 179.72286 * 5 4 3 20 20 C 1.39202 * 119.08830 * 359.51288 * 4 3 2 21 21 N 1.31789 * 120.68796 * 0.24298 * 20 4 3 22 22 C 1.32469 * 121.74597 * 0.02562 * 21 20 4 23 23 N 1.38937 * 119.57500 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.46947 * 270.28016 * 1 2 3 25 25 H 1.09001 * 109.46889 * 30.28121 * 1 2 3 26 26 H 1.09004 * 109.46701 * 150.28115 * 1 2 3 27 27 H 1.07999 * 120.79902 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.78563 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.82937 * 179.97438 * 7 6 5 30 30 H 0.96996 * 119.99998 * 180.02562 * 14 13 11 31 31 H 1.07994 * 120.17797 * 0.02924 * 19 5 4 32 32 H 1.08002 * 119.65904 * 180.22596 * 20 4 3 33 33 H 0.97005 * 119.99474 * 359.97438 * 23 22 21 34 34 H 0.97001 * 119.99813 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1913 0.0000 4 6 3.6041 1.1427 -0.0046 5 6 4.4000 2.3949 -0.0097 6 6 3.7524 3.6342 -0.0154 7 6 4.4847 4.8066 -0.0197 8 6 5.8648 4.7671 -0.0179 9 9 6.5744 5.9168 -0.0226 10 6 6.5330 3.5250 -0.0050 11 6 7.9454 3.4775 0.0037 12 1 8.5150 4.2648 -0.4675 13 6 8.6056 2.4106 0.6228 14 7 9.8616 2.1690 0.3458 15 14 7.6944 1.3308 1.8447 16 1 7.1712 0.1280 1.1484 17 1 8.6237 0.9125 2.9248 18 1 6.5638 2.0936 2.4323 19 6 5.7856 2.3349 -0.0084 20 6 4.2383 -0.0964 0.0014 21 7 3.5358 -1.2115 0.0065 22 6 2.2111 -1.2007 0.0055 23 7 1.5156 -2.4035 0.0115 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6852 2.1376 -0.0004 28 1 2.6731 3.6756 -0.0164 29 1 3.9746 5.7585 -0.0244 30 1 10.3192 1.4291 0.7746 31 1 6.2875 1.3787 -0.0041 32 1 5.3172 -0.1446 0.0017 33 1 2.0002 -3.2438 0.0160 34 1 0.5456 -2.4028 0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245538465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:23 Heat of formation + Delta-G solvation = -18.716707 kcal Electronic energy + Delta-G solvation = -19872.012905 eV Core-core repulsion = 16682.464260 eV Total energy + Delta-G solvation = -3189.548645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.29278 -41.39495 -39.38850 -36.15207 -35.51268 -34.46745 -32.64043 -32.30651 -29.23670 -27.94848 -27.07422 -24.35270 -24.04057 -22.77265 -21.32254 -19.38558 -18.89404 -18.43996 -18.00655 -17.11984 -16.71406 -16.18581 -16.07114 -15.82180 -15.55048 -15.44191 -14.68310 -14.57591 -14.32712 -13.88608 -13.73854 -13.64428 -13.55347 -13.28644 -13.03603 -12.75739 -12.64184 -12.29239 -11.82857 -11.69071 -11.58613 -11.08788 -10.54035 -10.40863 -9.67626 -9.54635 -8.98039 -8.30009 -6.59308 -0.13879 0.33969 0.67763 1.00387 1.20887 1.35910 1.42329 2.04242 2.47087 2.61945 2.94282 3.38674 3.62039 3.77194 3.89070 4.00830 4.07179 4.19026 4.30245 4.51935 4.59426 4.65806 4.74513 4.88007 4.91257 5.11922 5.19658 5.23032 5.33140 5.48514 5.56767 5.66781 5.74170 5.89327 6.03535 6.25793 6.38858 6.53735 6.58320 6.68878 7.33627 8.10782 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.006337 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.340268 B = 4417.705930 C = 5611.522058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.197 4.197 3 C -0.028 4.028 4 C -0.154 4.154 5 C -0.006 4.006 6 C -0.186 4.186 7 C -0.103 4.103 8 C -0.042 4.042 9 F -0.167 7.167 10 C 0.050 3.950 11 C -0.482 4.482 12 H 0.054 0.946 13 C 0.054 3.946 14 N -0.842 5.842 15 Si 0.952 3.048 16 H -0.248 1.248 17 H -0.273 1.273 18 H -0.252 1.252 19 C -0.218 4.218 20 C 0.127 3.873 21 N -0.564 5.564 22 C 0.385 3.615 23 N -0.836 5.836 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.296 0.704 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.407 0.593 34 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.629 -7.768 1.294 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.204 4.204 3 C -0.053 4.053 4 C -0.159 4.159 5 C -0.007 4.007 6 C -0.205 4.205 7 C -0.121 4.121 8 C -0.062 4.062 9 F -0.147 7.147 10 C 0.046 3.954 11 C -0.511 4.511 12 H 0.072 0.928 13 C -0.162 4.162 14 N -0.467 5.467 15 Si 0.775 3.225 16 H -0.173 1.173 17 H -0.199 1.199 18 H -0.175 1.175 19 C -0.237 4.237 20 C -0.030 4.030 21 N -0.282 5.282 22 C 0.147 3.853 23 N -0.382 5.382 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.236 0.764 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -19.897 -8.629 1.299 21.727 hybrid contribution 0.727 0.474 0.234 0.899 sum -19.171 -8.155 1.534 20.890 Atomic orbital electron populations 1.20665 0.87180 1.04198 1.03416 1.20488 0.99057 0.91187 1.09670 1.21610 0.91555 0.99328 0.92777 1.19583 0.94741 0.92809 1.08747 1.18517 0.91610 0.92723 0.97887 1.20781 0.99965 0.89458 1.10281 1.20928 0.90507 1.00322 1.00360 1.18279 0.90334 0.80937 1.16639 1.91276 1.79872 1.48327 1.95177 1.17778 0.93572 0.91313 0.92688 1.19302 0.90962 1.07298 1.33547 0.92802 1.26733 0.95518 0.96768 0.97151 1.69711 1.12584 1.27622 1.36820 0.85694 0.79094 0.79163 0.78550 1.17349 1.19880 1.17538 1.20969 0.93559 0.96170 1.13041 1.22475 0.99352 0.87151 0.94002 1.67086 1.07366 1.31671 1.22061 1.18604 0.87859 0.88060 0.90824 1.42182 1.09469 1.04088 1.82500 0.90009 0.89847 0.90241 0.81960 0.82832 0.83661 0.89287 0.87612 0.84550 0.76354 0.74530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.58 71.24 0.68 -0.50 16 2 C -0.20 -4.39 5.91 -19.67 -0.12 -4.50 16 3 C -0.03 -0.73 9.20 22.65 0.21 -0.52 16 4 C -0.15 -5.35 5.89 -19.94 -0.12 -5.47 16 5 C -0.01 -0.26 5.87 -20.09 -0.12 -0.37 16 6 C -0.19 -6.56 9.44 22.65 0.21 -6.34 16 7 C -0.10 -3.99 9.99 22.23 0.22 -3.76 16 8 C -0.04 -2.05 7.31 22.92 0.17 -1.88 16 9 F -0.17 -8.50 16.76 44.97 0.75 -7.75 16 10 C 0.05 2.63 5.10 -21.27 -0.11 2.52 16 11 C -0.48 -28.34 9.25 23.43 0.22 -28.12 16 12 H 0.05 3.47 7.97 -2.91 -0.02 3.45 16 13 C 0.05 2.98 5.41 85.24 0.46 3.44 16 14 N -0.84 -47.32 13.93 21.82 0.30 -47.02 16 15 Si 0.95 43.67 24.52 68.60 1.68 45.35 16 16 H -0.25 -10.62 6.04 99.48 0.60 -10.02 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.25 -11.81 6.86 99.48 0.68 -11.13 16 19 C -0.22 -10.35 6.54 22.94 0.15 -10.20 16 20 C 0.13 4.66 10.59 84.93 0.90 5.56 16 21 N -0.56 -18.73 10.38 -192.41 -2.00 -20.73 16 22 C 0.39 9.86 7.73 133.08 1.03 10.89 16 23 N -0.84 -13.62 8.98 -55.40 -0.50 -14.12 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 26 H 0.08 0.66 6.55 -2.38 -0.02 0.65 16 27 H 0.16 3.26 6.30 -2.91 -0.02 3.24 16 28 H 0.15 3.95 6.24 -2.91 -0.02 3.94 16 29 H 0.15 4.57 8.06 -2.91 -0.02 4.54 16 30 H 0.30 14.89 8.30 -92.71 -0.77 14.12 16 31 H 0.11 5.04 2.98 -2.91 -0.01 5.04 16 32 H 0.14 5.42 5.52 -2.91 -0.02 5.41 16 33 H 0.41 6.11 8.95 -92.70 -0.83 5.28 16 34 H 0.42 3.97 6.78 -92.71 -0.63 3.34 16 Total: -1.00 -68.68 286.25 3.63 -65.04 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.40 Total: 18.48 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 3.79 Total: -39.27 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.19 Total: -81.86 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.75 Total: -7.75 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.68 Total: 45.35 kcal Total: -68.68 3.63 -65.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245538465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.328 kcal (2) G-P(sol) polarization free energy of solvation -68.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds