Wall clock time and date at job start Mon Mar 30 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38105 * 120.39219 * 2 1 4 4 C 1.39933 * 118.40139 * 179.80667 * 3 2 1 5 5 C 1.48354 * 120.45781 * 180.24309 * 4 3 2 6 6 C 1.38672 * 120.01637 * 129.90735 * 5 4 3 7 7 C 1.40548 * 119.65741 * 179.80173 * 6 5 4 8 8 C 1.41342 * 120.15542 * 180.23247 * 7 6 5 9 9 H 1.07998 * 119.99872 * 330.36622 * 8 7 6 10 10 C 1.39897 * 120.00077 * 150.37811 * 8 7 6 11 11 N 1.30860 * 119.99986 * 161.71963 * 10 8 7 12 12 Si 1.86806 * 119.99724 * 341.71590 * 10 8 7 13 13 H 1.48500 * 109.47054 * 95.42075 * 12 10 8 14 14 H 1.48497 * 109.46878 * 215.41793 * 12 10 8 15 15 H 1.48492 * 109.47033 * 335.42050 * 12 10 8 16 16 C 1.40860 * 119.68804 * 0.43859 * 7 6 5 17 17 C 1.37563 * 120.02052 * 359.81512 * 16 7 6 18 18 C 1.38745 * 120.35214 * 359.97438 * 17 16 7 19 19 F 1.35104 * 119.84304 * 179.97438 * 18 17 16 20 20 C 1.39203 * 119.08710 * 0.43383 * 4 3 2 21 21 N 1.31788 * 120.68840 * 359.81010 * 20 4 3 22 22 C 1.32462 * 121.74567 * 359.97438 * 21 20 4 23 23 N 1.38938 * 119.57111 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.46786 * 269.71655 * 1 2 3 25 25 H 1.08992 * 109.47522 * 149.71849 * 1 2 3 26 26 H 1.08998 * 109.47407 * 29.71393 * 1 2 3 27 27 H 1.07993 * 120.79610 * 0.02786 * 3 2 1 28 28 H 1.08001 * 120.17024 * 0.03168 * 6 5 4 29 29 H 0.96997 * 119.99344 * 179.97438 * 11 10 8 30 30 H 1.07994 * 119.98454 * 179.79803 * 16 7 6 31 31 H 1.08003 * 119.82151 * 179.97438 * 17 16 7 32 32 H 1.08007 * 119.65596 * 179.79113 * 20 4 3 33 33 H 0.97007 * 120.00240 * 179.97438 * 23 22 21 34 34 H 0.97001 * 120.00725 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1913 0.0000 4 6 3.6042 1.1427 0.0042 5 6 4.4001 2.3946 0.0098 6 6 5.4196 2.5643 0.9344 7 6 6.1716 3.7517 0.9302 8 6 7.2163 3.9337 1.8647 9 1 7.1624 3.4602 2.8339 10 6 8.3199 4.7274 1.5344 11 7 9.0979 5.1919 2.4785 12 14 8.6830 5.1241 -0.2546 13 1 8.0911 6.4416 -0.5995 14 1 10.1526 5.1720 -0.4625 15 1 8.0940 4.0741 -1.1238 16 6 5.8765 4.7611 -0.0068 17 6 4.8589 4.5812 -0.9148 18 6 4.1185 3.4078 -0.9147 19 9 3.1210 3.2421 -1.8107 20 6 4.2382 -0.0966 -0.0011 21 7 3.5357 -1.2116 -0.0061 22 6 2.2111 -1.2007 -0.0058 23 7 1.5156 -2.4035 -0.0118 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3634 -0.8874 -0.5181 26 1 -0.3634 0.8925 -0.5094 27 1 1.6852 2.1375 0.0005 28 1 5.6369 1.7866 1.6516 29 1 9.8632 5.7420 2.2494 30 1 6.4492 5.6767 -0.0121 31 1 4.6351 5.3575 -1.6315 32 1 5.3172 -0.1448 -0.0014 33 1 0.5455 -2.4028 -0.0113 34 1 1.9999 -3.2439 -0.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245538843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:34 Heat of formation + Delta-G solvation = -2.511995 kcal Electronic energy + Delta-G solvation = -19764.220497 eV Core-core repulsion = 16575.374541 eV Total energy + Delta-G solvation = -3188.845956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.68078 -40.05636 -37.69422 -34.95588 -33.65489 -33.24284 -31.37459 -30.15847 -28.22255 -26.80681 -24.96671 -22.95953 -22.63195 -20.86520 -20.29704 -17.53802 -17.46949 -17.17691 -16.61876 -15.45091 -14.99510 -14.81032 -14.61680 -14.38323 -14.26023 -13.70850 -13.26983 -13.04762 -12.77038 -12.71598 -12.67734 -12.45031 -11.98745 -11.85219 -11.66596 -10.95060 -10.69642 -10.66742 -10.33932 -10.12997 -9.74225 -9.39912 -9.23061 -9.10796 -8.12102 -7.68070 -7.17265 -7.06038 -4.58266 1.44489 1.61919 2.37609 2.49309 3.03748 3.15000 3.25203 3.62252 3.89365 4.11879 4.33245 4.82066 4.97524 5.16282 5.22248 5.35578 5.44038 5.49808 5.57403 5.57755 5.81889 5.91436 6.11261 6.30078 6.36813 6.49824 6.52387 6.72634 6.83858 6.98401 7.19494 7.32070 7.37665 7.42621 7.53356 7.68075 7.92947 8.21642 8.43586 8.47764 8.65891 9.95765 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.004902 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.090384 B = 5710.366715 C = 6210.652121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.208 4.208 3 C -0.019 4.019 4 C -0.128 4.128 5 C -0.035 4.035 6 C -0.170 4.170 7 C 0.085 3.915 8 C -0.440 4.440 9 H 0.094 0.906 10 C 0.084 3.916 11 N -0.801 5.801 12 Si 0.908 3.092 13 H -0.269 1.269 14 H -0.288 1.288 15 H -0.242 1.242 16 C -0.216 4.216 17 C -0.101 4.101 18 C -0.035 4.035 19 F -0.166 7.166 20 C 0.154 3.846 21 N -0.543 5.543 22 C 0.391 3.609 23 N -0.857 5.857 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.403 0.597 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -7.821 -4.501 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.215 4.215 3 C -0.044 4.044 4 C -0.132 4.132 5 C -0.036 4.036 6 C -0.190 4.190 7 C 0.082 3.918 8 C -0.468 4.468 9 H 0.112 0.888 10 C -0.136 4.136 11 N -0.425 5.425 12 Si 0.735 3.265 13 H -0.195 1.195 14 H -0.216 1.216 15 H -0.165 1.165 16 C -0.236 4.236 17 C -0.120 4.120 18 C -0.055 4.055 19 F -0.145 7.145 20 C -0.003 4.003 21 N -0.259 5.259 22 C 0.155 3.845 23 N -0.403 5.403 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.176 0.824 33 H 0.234 0.766 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.535 -8.468 -4.383 14.209 hybrid contribution -0.393 0.851 -0.805 1.236 sum -10.929 -7.618 -5.188 14.296 Atomic orbital electron populations 1.20525 0.90879 1.02296 1.01808 1.19999 0.96662 0.92366 1.12496 1.21304 0.93058 0.97330 0.92738 1.19550 0.93258 0.94185 1.06229 1.18212 0.96935 0.91447 0.97038 1.20985 0.98987 0.97951 1.01047 1.17680 0.92769 0.90051 0.91269 1.19482 1.01314 1.24572 1.01417 0.88806 1.26173 0.95381 0.91898 1.00120 1.69703 1.13438 1.23938 1.35405 0.86346 0.76774 0.80699 0.82728 1.19477 1.21564 1.16538 1.20935 1.01176 0.99873 1.01572 1.20513 0.96660 0.95436 0.99431 1.17171 0.94741 0.97536 0.96009 1.91300 1.59955 1.96151 1.67084 1.22560 0.99571 0.85802 0.92376 1.67117 1.05693 1.32054 1.21056 1.18145 0.88430 0.86053 0.91905 1.42173 1.08580 1.05044 1.84497 0.91646 0.92354 0.91363 0.85083 0.86961 0.90234 0.87335 0.87463 0.82396 0.76592 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.58 36.00 0.34 -0.65 16 2 C -0.21 -3.00 5.91 -104.32 -0.62 -3.61 16 3 C -0.02 -0.31 8.66 -39.00 -0.34 -0.65 16 4 C -0.13 -2.39 5.32 -104.74 -0.56 -2.94 16 5 C -0.03 -0.73 5.49 -104.91 -0.58 -1.31 16 6 C -0.17 -3.78 9.25 -38.55 -0.36 -4.13 16 7 C 0.09 2.06 5.10 -106.85 -0.55 1.51 16 8 C -0.44 -11.29 9.56 -37.78 -0.36 -11.65 16 9 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.08 2.10 5.40 -17.34 -0.09 2.01 16 11 N -0.80 -20.49 13.93 55.54 0.77 -19.72 16 12 Si 0.91 19.85 24.51 -169.99 -4.17 15.68 16 13 H -0.27 -5.68 6.70 56.52 0.38 -5.30 16 14 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.24 -5.43 6.86 56.52 0.39 -5.05 16 16 C -0.22 -4.99 7.16 -38.84 -0.28 -5.26 16 17 C -0.10 -2.18 9.99 -39.64 -0.40 -2.58 16 18 C -0.03 -0.75 7.20 -38.73 -0.28 -1.03 16 19 F -0.17 -3.43 15.90 2.25 0.04 -3.39 16 20 C 0.15 2.72 10.67 -17.21 -0.18 2.54 16 21 N -0.54 -9.13 10.38 -12.17 -0.13 -9.25 16 22 C 0.39 5.76 7.73 -155.01 -1.20 4.56 16 23 N -0.86 -8.91 8.98 31.14 0.28 -8.63 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.48 6.55 -51.93 -0.34 0.13 16 26 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.13 2.12 7.83 -52.49 -0.41 1.71 16 28 H 0.11 2.35 8.04 -52.49 -0.42 1.93 16 29 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.11 2.47 4.72 -52.49 -0.25 2.22 16 31 H 0.11 2.04 8.06 -52.48 -0.42 1.61 16 32 H 0.16 2.62 8.04 -52.48 -0.42 2.20 16 33 H 0.40 3.09 6.79 -40.82 -0.28 2.81 16 34 H 0.40 3.70 8.95 -40.82 -0.37 3.33 16 LS Contribution 292.98 15.07 4.42 4.42 Total: -1.00 -27.80 292.98 -7.57 -35.36 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.34 Total: 8.73 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -5.43 Total: -23.19 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.93 Total: -37.60 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.17 Total: 15.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.80 -7.57 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245538843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.852 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds