Wall clock time and date at job start Mon Mar 30 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38105 * 120.39219 * 2 1 4 4 C 1.39933 * 118.40139 * 179.80667 * 3 2 1 5 5 C 1.48354 * 120.45781 * 180.24309 * 4 3 2 6 6 C 1.38672 * 120.01637 * 129.90735 * 5 4 3 7 7 C 1.40548 * 119.65741 * 179.80173 * 6 5 4 8 8 C 1.41342 * 120.15542 * 180.23247 * 7 6 5 9 9 H 1.07998 * 119.99872 * 330.36622 * 8 7 6 10 10 C 1.39897 * 120.00077 * 150.37811 * 8 7 6 11 11 N 1.30860 * 119.99986 * 161.71963 * 10 8 7 12 12 Si 1.86806 * 119.99724 * 341.71590 * 10 8 7 13 13 H 1.48500 * 109.47054 * 95.42075 * 12 10 8 14 14 H 1.48497 * 109.46878 * 215.41793 * 12 10 8 15 15 H 1.48492 * 109.47033 * 335.42050 * 12 10 8 16 16 C 1.40860 * 119.68804 * 0.43859 * 7 6 5 17 17 C 1.37563 * 120.02052 * 359.81512 * 16 7 6 18 18 C 1.38745 * 120.35214 * 359.97438 * 17 16 7 19 19 F 1.35104 * 119.84304 * 179.97438 * 18 17 16 20 20 C 1.39203 * 119.08710 * 0.43383 * 4 3 2 21 21 N 1.31788 * 120.68840 * 359.81010 * 20 4 3 22 22 C 1.32462 * 121.74567 * 359.97438 * 21 20 4 23 23 N 1.38938 * 119.57111 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.46786 * 269.71655 * 1 2 3 25 25 H 1.08992 * 109.47522 * 149.71849 * 1 2 3 26 26 H 1.08998 * 109.47407 * 29.71393 * 1 2 3 27 27 H 1.07993 * 120.79610 * 0.02786 * 3 2 1 28 28 H 1.08001 * 120.17024 * 0.03168 * 6 5 4 29 29 H 0.96997 * 119.99344 * 179.97438 * 11 10 8 30 30 H 1.07994 * 119.98454 * 179.79803 * 16 7 6 31 31 H 1.08003 * 119.82151 * 179.97438 * 17 16 7 32 32 H 1.08007 * 119.65596 * 179.79113 * 20 4 3 33 33 H 0.97007 * 120.00240 * 179.97438 * 23 22 21 34 34 H 0.97001 * 120.00725 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.1913 0.0000 4 6 3.6042 1.1427 0.0042 5 6 4.4001 2.3946 0.0098 6 6 5.4196 2.5643 0.9344 7 6 6.1716 3.7517 0.9302 8 6 7.2163 3.9337 1.8647 9 1 7.1624 3.4602 2.8339 10 6 8.3199 4.7274 1.5344 11 7 9.0979 5.1919 2.4785 12 14 8.6830 5.1241 -0.2546 13 1 8.0911 6.4416 -0.5995 14 1 10.1526 5.1720 -0.4625 15 1 8.0940 4.0741 -1.1238 16 6 5.8765 4.7611 -0.0068 17 6 4.8589 4.5812 -0.9148 18 6 4.1185 3.4078 -0.9147 19 9 3.1210 3.2421 -1.8107 20 6 4.2382 -0.0966 -0.0011 21 7 3.5357 -1.2116 -0.0061 22 6 2.2111 -1.2007 -0.0058 23 7 1.5156 -2.4035 -0.0118 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3634 -0.8874 -0.5181 26 1 -0.3634 0.8925 -0.5094 27 1 1.6852 2.1375 0.0005 28 1 5.6369 1.7866 1.6516 29 1 9.8632 5.7420 2.2494 30 1 6.4492 5.6767 -0.0121 31 1 4.6351 5.3575 -1.6315 32 1 5.3172 -0.1448 -0.0014 33 1 0.5455 -2.4028 -0.0113 34 1 1.9999 -3.2439 -0.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245538843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:34 Heat of formation + Delta-G solvation = -18.345447 kcal Electronic energy + Delta-G solvation = -19764.907087 eV Core-core repulsion = 16575.374541 eV Total energy + Delta-G solvation = -3189.532546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.38656 -41.29558 -39.41243 -36.22023 -35.35120 -34.46080 -32.78991 -31.96018 -29.57374 -27.93343 -26.79552 -24.36152 -23.98644 -22.51899 -21.84319 -19.28152 -18.61741 -18.33108 -18.30583 -17.21237 -16.63615 -16.17412 -16.16254 -15.87302 -15.42917 -15.00077 -14.85475 -14.70339 -14.40064 -14.00093 -13.74607 -13.71720 -13.57634 -13.50101 -12.92745 -12.59483 -12.44888 -12.14752 -12.02098 -11.65840 -11.48378 -11.06861 -10.53814 -10.44381 -9.68927 -9.41345 -8.92769 -8.48568 -6.51651 0.07158 0.33697 0.60206 0.87869 1.28419 1.41234 1.51001 2.11799 2.46034 2.62168 2.90633 3.36154 3.61980 3.73961 3.82716 4.02688 4.09277 4.17977 4.28847 4.52483 4.59394 4.73405 4.78157 4.81777 4.89349 5.11421 5.12520 5.24784 5.33449 5.43387 5.60280 5.64284 5.70030 5.82367 6.14283 6.29828 6.37857 6.55602 6.63933 6.75795 7.32850 8.14943 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.004902 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.090384 B = 5710.366715 C = 6210.652121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.202 4.202 3 C -0.028 4.028 4 C -0.159 4.159 5 C -0.026 4.026 6 C -0.179 4.179 7 C 0.073 3.927 8 C -0.474 4.474 9 H 0.063 0.937 10 C 0.052 3.948 11 N -0.841 5.841 12 Si 0.958 3.042 13 H -0.253 1.253 14 H -0.276 1.276 15 H -0.252 1.252 16 C -0.225 4.225 17 C -0.102 4.102 18 C -0.031 4.031 19 F -0.158 7.158 20 C 0.147 3.853 21 N -0.559 5.559 22 C 0.390 3.610 23 N -0.835 5.835 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.296 0.704 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.419 0.581 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.639 -8.759 -6.312 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.209 4.209 3 C -0.054 4.054 4 C -0.164 4.164 5 C -0.028 4.028 6 C -0.198 4.198 7 C 0.071 3.929 8 C -0.503 4.503 9 H 0.081 0.919 10 C -0.164 4.164 11 N -0.466 5.466 12 Si 0.781 3.219 13 H -0.178 1.178 14 H -0.203 1.203 15 H -0.176 1.176 16 C -0.244 4.244 17 C -0.121 4.121 18 C -0.051 4.051 19 F -0.137 7.137 20 C -0.010 4.010 21 N -0.277 5.277 22 C 0.151 3.849 23 N -0.382 5.382 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.152 0.848 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -13.032 -9.435 -6.191 17.239 hybrid contribution 0.092 0.925 -0.274 0.969 sum -12.940 -8.510 -6.465 16.783 Atomic orbital electron populations 1.20641 0.87611 1.03921 1.03277 1.20388 0.98892 0.91248 1.10401 1.21419 0.92324 0.98548 0.93081 1.19478 0.94127 0.93318 1.09442 1.18402 0.96219 0.92419 0.95759 1.21066 0.99520 0.97627 1.01609 1.17809 0.92639 0.91005 0.91482 1.19445 1.03242 1.26484 1.01081 0.91898 1.26784 0.94792 0.91504 1.03288 1.69724 1.14511 1.25401 1.36962 0.85593 0.77248 0.80706 0.78351 1.17814 1.20273 1.17607 1.21016 1.01900 0.99737 1.01759 1.20793 0.95710 0.96148 0.99413 1.17380 0.94466 0.97605 0.95652 1.91319 1.59551 1.96117 1.66714 1.22528 0.99802 0.85939 0.92724 1.67143 1.06902 1.31519 1.22105 1.18496 0.88074 0.87662 0.90677 1.42157 1.09445 1.04034 1.82563 0.90105 0.89802 0.90771 0.84829 0.86838 0.89342 0.87024 0.84484 0.82557 0.74663 0.76156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.58 71.24 0.68 -0.91 16 2 C -0.20 -5.25 5.91 -19.67 -0.12 -5.36 16 3 C -0.03 -0.90 8.66 22.65 0.20 -0.70 16 4 C -0.16 -5.84 5.32 -19.94 -0.11 -5.94 16 5 C -0.03 -1.10 5.49 -20.05 -0.11 -1.21 16 6 C -0.18 -8.13 9.25 22.94 0.21 -7.91 16 7 C 0.07 3.62 5.10 -21.31 -0.11 3.51 16 8 C -0.47 -25.51 9.56 23.44 0.22 -25.29 16 9 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 10 C 0.05 2.69 5.40 85.24 0.46 3.15 16 11 N -0.84 -44.43 13.93 21.82 0.30 -44.12 16 12 Si 0.96 40.86 24.51 68.60 1.68 42.54 16 13 H -0.25 -10.08 6.70 99.48 0.67 -9.41 16 14 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.25 -11.07 6.86 99.48 0.68 -10.39 16 16 C -0.22 -10.26 7.16 22.75 0.16 -10.10 16 17 C -0.10 -4.21 9.99 22.23 0.22 -3.99 16 18 C -0.03 -1.30 7.20 22.82 0.16 -1.13 16 19 F -0.16 -6.19 15.90 44.97 0.72 -5.48 16 20 C 0.15 5.15 10.67 84.93 0.91 6.05 16 21 N -0.56 -18.04 10.38 -192.41 -2.00 -20.04 16 22 C 0.39 10.43 7.73 133.08 1.03 11.45 16 23 N -0.84 -14.30 8.98 -55.40 -0.50 -14.80 16 24 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.08 0.95 6.55 -2.39 -0.02 0.93 16 26 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.13 4.08 7.83 -2.91 -0.02 4.06 16 28 H 0.11 5.00 8.04 -2.91 -0.02 4.98 16 29 H 0.30 14.01 8.30 -92.71 -0.77 13.24 16 30 H 0.11 4.98 4.72 -2.91 -0.01 4.97 16 31 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.16 5.31 8.04 -2.91 -0.02 5.29 16 33 H 0.42 4.53 6.79 -92.70 -0.63 3.90 16 34 H 0.41 6.16 8.95 -92.71 -0.83 5.33 16 Total: -1.00 -60.82 292.98 3.67 -57.15 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.36 Total: 23.14 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 3.82 Total: -38.38 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -2.19 Total: -78.97 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.72 Total: -5.48 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.68 Total: 42.54 kcal Total: -60.82 3.67 -57.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245538843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.801 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds