Wall clock time and date at job start Mon Mar 30 2020 01:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36955 * 120.30075 * 2 1 4 4 C 1.40268 * 118.48810 * 180.25433 * 3 2 1 5 5 C 1.47748 * 120.47812 * 179.70055 * 4 3 2 6 6 C 1.39222 * 120.25881 * 309.71659 * 5 4 3 7 7 C 1.37955 * 120.12924 * 179.79084 * 6 5 4 8 8 C 1.39226 * 120.65796 * 0.47054 * 7 6 5 9 9 F 1.35105 * 119.73798 * 179.76103 * 8 7 6 10 10 C 1.37593 * 120.51733 * 359.79026 * 8 7 6 11 11 C 1.40735 * 119.85039 * 359.97341 * 10 8 7 12 12 C 1.40837 * 120.31843 * 179.97438 * 11 10 8 13 13 H 1.08005 * 120.00164 * 153.73439 * 12 11 10 14 14 C 1.40026 * 120.00164 * 333.73705 * 12 11 10 15 15 N 1.30798 * 120.00048 * 344.24510 * 14 12 11 16 16 Si 1.86801 * 119.99792 * 164.25119 * 14 12 11 17 17 H 1.48498 * 109.47368 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 120.00032 * 16 14 12 19 19 H 1.48501 * 109.47110 * 239.99501 * 16 14 12 20 20 C 1.39630 * 119.03872 * 359.45253 * 4 3 2 21 21 N 1.31722 * 120.50259 * 0.55341 * 20 4 3 22 22 C 1.32568 * 121.63996 * 359.72077 * 21 20 4 23 23 N 1.38750 * 119.53054 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46902 * 90.00276 * 1 2 3 25 25 H 1.09003 * 109.47010 * 210.00032 * 1 2 3 26 26 H 1.08996 * 109.47529 * 330.00547 * 1 2 3 27 27 H 1.08005 * 120.75758 * 359.97230 * 3 2 1 28 28 H 1.08003 * 119.93753 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.67315 * 180.23712 * 7 6 5 30 30 H 1.08006 * 120.07445 * 179.97438 * 10 8 7 31 31 H 0.97003 * 120.00116 * 179.97438 * 15 14 12 32 32 H 1.07997 * 119.74565 * 180.29798 * 20 4 3 33 33 H 0.96998 * 119.99704 * 180.02562 * 23 22 21 34 34 H 0.97000 * 120.00095 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1825 0.0000 4 6 3.6000 1.1381 -0.0055 5 6 4.3893 2.3871 -0.0124 6 6 4.1108 3.3879 -0.9392 7 6 4.8466 4.5548 -0.9405 8 6 5.8794 4.7438 -0.0262 9 9 6.5912 5.8919 -0.0471 10 6 6.1811 3.7703 0.8982 11 6 5.4411 2.5734 0.9219 12 6 5.7419 1.5702 1.8635 13 1 4.9747 0.8788 2.1797 14 6 7.0356 1.4689 2.3896 15 7 8.0304 2.0821 1.8021 16 14 7.3406 0.4581 3.9306 17 1 6.0598 -0.1298 4.3986 18 1 8.3034 -0.6306 3.6259 19 1 7.9011 1.3316 4.9927 20 6 4.2389 -0.1035 0.0010 21 7 3.5356 -1.2172 0.0011 22 6 2.2100 -1.2027 0.0006 23 7 1.5129 -2.4024 0.0002 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6754 2.1276 -0.0004 28 1 3.3146 3.2520 -1.6563 29 1 4.6217 5.3279 -1.6603 30 1 6.9841 3.9243 1.6039 31 1 8.9265 2.0123 2.1669 32 1 5.3178 -0.1509 0.0017 33 1 0.5429 -2.3996 -0.0005 34 1 1.9956 -3.2438 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245540239.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:25 Heat of formation + Delta-G solvation = -19.694841 kcal Electronic energy + Delta-G solvation = -19995.810699 eV Core-core repulsion = 16806.219639 eV Total energy + Delta-G solvation = -3189.591060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.54665 -41.17451 -39.17232 -35.75207 -35.60623 -34.32279 -32.32140 -31.58320 -29.13422 -27.70960 -27.27043 -24.10585 -23.35374 -22.91670 -21.28746 -19.48759 -18.43298 -18.15356 -17.74203 -16.78372 -16.69293 -16.41516 -16.21191 -15.71828 -15.31880 -14.84411 -14.64754 -14.47717 -14.02717 -13.83514 -13.70403 -13.48041 -13.42034 -12.99186 -12.88698 -12.83762 -12.31930 -12.14567 -11.76353 -11.67659 -11.26008 -11.10909 -10.35680 -10.25536 -9.48342 -9.25835 -8.74639 -8.25557 -6.39064 0.31929 0.56338 0.88942 1.10431 1.36087 1.45373 1.49886 2.16170 2.62167 2.79246 3.10122 3.59079 3.80858 3.86374 4.11652 4.26593 4.36013 4.41207 4.55553 4.68427 4.70583 4.90209 4.97142 5.05063 5.09489 5.24880 5.29657 5.40102 5.54672 5.64028 5.78835 5.81442 5.97556 6.03979 6.28280 6.54371 6.57324 6.71750 6.84265 6.89330 7.52121 8.24088 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.007499 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.731834 B = 3732.735744 C = 5364.108173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.203 4.203 3 C -0.047 4.047 4 C -0.112 4.112 5 C -0.171 4.171 6 C -0.049 4.049 7 C -0.272 4.272 8 C 0.090 3.910 9 F -0.168 7.168 10 C -0.222 4.222 11 C 0.119 3.881 12 C -0.462 4.462 13 H 0.079 0.921 14 C 0.040 3.960 15 N -0.814 5.814 16 Si 0.972 3.028 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.263 1.263 20 C 0.144 3.856 21 N -0.565 5.565 22 C 0.374 3.626 23 N -0.840 5.840 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.291 0.709 32 H 0.136 0.864 33 H 0.417 0.583 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.122 -5.787 -1.624 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.210 4.210 3 C -0.072 4.072 4 C -0.116 4.116 5 C -0.174 4.174 6 C -0.067 4.067 7 C -0.291 4.291 8 C 0.071 3.929 9 F -0.147 7.147 10 C -0.242 4.242 11 C 0.116 3.884 12 C -0.490 4.490 13 H 0.097 0.903 14 C -0.177 4.177 15 N -0.439 5.439 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.189 1.189 19 H -0.188 1.188 20 C -0.012 4.012 21 N -0.283 5.283 22 C 0.135 3.865 23 N -0.388 5.388 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.251 0.749 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.401 -6.488 -1.619 13.218 hybrid contribution 0.598 0.591 0.670 1.075 sum -10.803 -5.897 -0.949 12.345 Atomic orbital electron populations 1.20614 0.87795 1.03627 1.03103 1.20122 0.98735 0.91481 1.10633 1.21299 0.92259 0.98576 0.95107 1.19353 0.93553 0.93189 1.05545 1.18754 1.03058 0.95210 1.00334 1.20722 0.97765 0.91489 0.96737 1.20508 1.01895 1.01695 1.05034 1.17985 0.93493 0.82121 0.99286 1.91323 1.78028 1.48988 1.96370 1.21164 1.05960 0.94421 1.02695 1.17594 0.89456 0.90923 0.90403 1.19629 0.95985 1.12991 1.20415 0.90270 1.26711 0.95243 0.96008 0.99752 1.69847 1.01610 1.35614 1.36878 0.85294 0.79290 0.78455 0.77665 1.18500 1.18921 1.18764 1.22426 0.99001 0.86681 0.93106 1.67128 1.06948 1.32100 1.22162 1.18527 0.88049 0.87769 0.92124 1.42037 1.09168 1.04053 1.83500 0.90142 0.90421 0.90693 0.84026 0.84942 0.85502 0.87262 0.89820 0.84673 0.74892 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 71.24 0.68 -1.02 16 2 C -0.20 -5.81 5.88 -19.91 -0.12 -5.93 16 3 C -0.05 -1.58 9.29 22.46 0.21 -1.37 16 4 C -0.11 -4.61 4.93 -19.93 -0.10 -4.71 16 5 C -0.17 -7.87 5.54 -19.62 -0.11 -7.98 16 6 C -0.05 -2.03 9.52 22.44 0.21 -1.81 16 7 C -0.27 -11.75 10.01 22.44 0.22 -11.52 16 8 C 0.09 4.43 7.28 22.35 0.16 4.59 16 9 F -0.17 -8.00 17.26 44.97 0.78 -7.22 16 10 C -0.22 -11.81 8.63 22.73 0.20 -11.62 16 11 C 0.12 6.19 5.56 -21.12 -0.12 6.07 16 12 C -0.46 -23.77 7.12 23.34 0.17 -23.60 16 13 H 0.08 4.08 6.60 -2.91 -0.02 4.06 16 14 C 0.04 1.95 5.17 85.28 0.44 2.39 16 15 N -0.81 -41.92 10.95 21.84 0.24 -41.68 16 16 Si 0.97 38.24 29.59 68.60 2.03 40.27 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 C 0.14 6.14 9.16 85.05 0.78 6.92 16 21 N -0.57 -21.76 10.39 -192.11 -2.00 -23.75 16 22 C 0.37 11.63 7.72 133.14 1.03 12.66 16 23 N -0.84 -17.77 8.97 -55.39 -0.50 -18.27 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.08 6.54 -2.39 -0.02 1.06 16 26 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.13 4.55 8.05 -2.91 -0.02 4.52 16 29 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.11 6.15 6.21 -2.91 -0.02 6.13 16 31 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 32 H 0.14 6.33 7.28 -2.91 -0.02 6.31 16 33 H 0.42 5.95 6.77 -92.71 -0.63 5.32 16 34 H 0.40 7.89 8.95 -92.71 -0.83 7.06 16 Total: -1.00 -61.08 294.90 3.92 -57.16 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.29 Total: 30.43 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.66 Total: -36.94 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -2.25 Total: -83.70 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.78 Total: -7.22 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -61.08 3.92 -57.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245540239.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.462 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds