Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38094 * 120.38872 * 2 1 4 4 C 1.39929 * 118.40297 * 180.19735 * 3 2 1 5 5 C 1.48376 * 120.45864 * 179.79960 * 4 3 2 6 6 C 1.39716 * 119.98685 * 359.72512 * 5 4 3 7 7 C 1.38620 * 120.34828 * 179.69974 * 6 5 4 8 8 F 1.35102 * 119.83534 * 180.25332 * 7 6 5 9 9 C 1.37942 * 120.32669 * 0.27466 * 7 6 5 10 10 C 1.40713 * 119.97065 * 359.97438 * 9 7 6 11 11 C 1.41435 * 120.17158 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99985 * 204.52670 * 11 10 9 13 13 C 1.39922 * 120.00016 * 24.53091 * 11 10 9 14 14 N 1.30841 * 119.99835 * 17.89646 * 13 11 10 15 15 Si 1.86793 * 120.00092 * 197.90344 * 13 11 10 16 16 H 1.48500 * 109.47393 * 89.99700 * 15 13 11 17 17 H 1.48501 * 109.47170 * 209.99926 * 15 13 11 18 18 H 1.48498 * 109.47086 * 329.99582 * 15 13 11 19 19 C 1.38752 * 119.99082 * 179.97438 * 5 4 3 20 20 C 1.39197 * 119.08782 * 359.53022 * 4 3 2 21 21 N 1.31793 * 120.68669 * 0.24685 * 20 4 3 22 22 C 1.32464 * 121.74682 * 0.02562 * 21 20 4 23 23 N 1.38928 * 119.57692 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.46801 * 270.25795 * 1 2 3 25 25 H 1.09002 * 109.46738 * 30.25834 * 1 2 3 26 26 H 1.08996 * 109.47359 * 150.25693 * 1 2 3 27 27 H 1.08002 * 120.80478 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.82204 * 359.97438 * 6 5 4 29 29 H 1.07996 * 120.01121 * 179.97438 * 9 7 6 30 30 H 0.96997 * 119.99544 * 180.02562 * 14 13 11 31 31 H 1.07998 * 120.16294 * 359.97438 * 19 5 4 32 32 H 1.08000 * 119.66043 * 180.22977 * 20 4 3 33 33 H 0.96997 * 119.99186 * 0.02562 * 23 22 21 34 34 H 0.96996 * 119.99897 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2057 1.1912 0.0000 4 6 3.6041 1.1427 -0.0042 5 6 4.4001 2.3949 -0.0089 6 6 3.7535 3.6334 -0.0149 7 6 4.4897 4.8079 -0.0130 8 9 3.8537 5.9999 -0.0136 9 6 5.8685 4.7657 -0.0109 10 6 6.5338 3.5258 -0.0101 11 6 7.9473 3.4775 -0.0085 12 1 8.4584 2.6087 -0.3962 13 6 8.6835 4.5554 0.4954 14 7 8.1057 5.4369 1.2706 15 14 10.4913 4.7359 0.0613 16 1 10.6248 5.5449 -1.1768 17 1 11.2025 5.4140 1.1747 18 1 11.0841 3.3923 -0.1590 19 6 5.7864 2.3355 -0.0125 20 6 4.2383 -0.0964 0.0017 21 7 3.5358 -1.2114 0.0063 22 6 2.2112 -1.2007 0.0050 23 7 1.5157 -2.4034 0.0094 24 1 -0.3633 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3634 -0.8922 -0.5098 27 1 1.6853 2.1376 -0.0004 28 1 2.6743 3.6758 -0.0165 29 1 6.4370 5.6839 -0.0098 30 1 8.6160 6.1843 1.6196 31 1 6.2885 1.3794 -0.0116 32 1 5.3172 -0.1445 0.0023 33 1 2.0002 -3.2437 0.0139 34 1 0.5458 -2.4027 0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245540768.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -19.906845 kcal Electronic energy + Delta-G solvation = -19474.560062 eV Core-core repulsion = 16284.959809 eV Total energy + Delta-G solvation = -3189.600253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.57220 -41.32428 -39.20662 -36.29907 -35.31575 -34.39028 -32.39326 -31.50989 -29.24184 -27.99522 -27.23456 -24.31286 -23.89487 -22.33663 -21.65508 -19.25625 -18.65409 -18.30014 -17.73145 -16.73329 -16.57985 -16.45044 -16.24306 -15.67895 -15.50240 -15.39992 -14.76248 -14.67457 -14.05314 -13.81299 -13.67357 -13.50843 -13.38636 -12.99174 -12.91766 -12.64511 -12.46756 -12.13273 -11.97064 -11.65232 -11.47114 -11.05150 -10.50727 -10.39131 -9.58086 -9.37073 -8.70796 -8.25677 -6.45401 0.00485 0.37175 0.79608 1.23469 1.40433 1.54150 1.55257 2.19649 2.59554 2.65040 3.03940 3.61379 3.63562 3.70547 3.99337 4.04654 4.10940 4.34842 4.52039 4.54601 4.68779 4.84556 4.85129 4.95662 5.01902 5.14901 5.23575 5.30852 5.33360 5.64516 5.71194 5.76077 5.92968 5.96010 6.25246 6.41069 6.55878 6.59640 6.84305 6.86493 7.36309 8.26778 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.004606 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.524476 B = 6077.783062 C = 7116.276666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.202 4.202 3 C -0.037 4.037 4 C -0.151 4.151 5 C 0.016 3.984 6 C -0.268 4.268 7 C 0.097 3.903 8 F -0.165 7.165 9 C -0.230 4.230 10 C 0.106 3.894 11 C -0.487 4.487 12 H 0.089 0.911 13 C 0.035 3.965 14 N -0.821 5.821 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.253 1.253 19 C -0.229 4.229 20 C 0.142 3.858 21 N -0.559 5.559 22 C 0.387 3.613 23 N -0.836 5.836 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.291 0.709 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.408 0.592 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 -10.280 -1.880 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.209 4.209 3 C -0.062 4.062 4 C -0.156 4.156 5 C 0.015 3.985 6 C -0.288 4.288 7 C 0.078 3.922 8 F -0.144 7.144 9 C -0.250 4.250 10 C 0.103 3.897 11 C -0.516 4.516 12 H 0.107 0.893 13 C -0.181 4.181 14 N -0.446 5.446 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.194 1.194 18 H -0.176 1.176 19 C -0.249 4.249 20 C -0.015 4.015 21 N -0.277 5.277 22 C 0.148 3.852 23 N -0.382 5.382 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.175 0.825 33 H 0.238 0.762 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.373 -10.828 -1.719 15.093 hybrid contribution 0.362 1.336 0.051 1.385 sum -10.011 -9.492 -1.669 13.896 Atomic orbital electron populations 1.20647 0.87614 1.03976 1.03248 1.20416 0.98881 0.91305 1.10316 1.21540 0.92436 0.98790 0.93447 1.19556 0.94175 0.93232 1.08644 1.18133 0.92336 0.90905 0.97157 1.20504 0.98988 0.90237 1.19068 1.17739 0.90877 0.80050 1.03523 1.91326 1.82719 1.45829 1.94574 1.21257 0.91265 0.99854 1.12669 1.17609 0.94109 0.90423 0.87517 1.19918 0.91288 1.03586 1.36792 0.89279 1.26864 1.05991 0.93669 0.91589 1.69889 1.40926 1.11465 1.22276 0.85138 0.75445 0.79928 0.78873 1.18795 1.19353 1.17593 1.21291 0.92575 0.97459 1.13535 1.22583 0.99973 0.86154 0.92757 1.67157 1.06921 1.31604 1.21977 1.18528 0.88111 0.87705 0.90859 1.42153 1.09425 1.04062 1.82605 0.90206 0.90551 0.89908 0.83870 0.85403 0.87298 0.89873 0.86555 0.82455 0.76213 0.74690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.58 71.24 0.68 -0.84 16 2 C -0.20 -5.09 5.91 -19.66 -0.12 -5.21 16 3 C -0.04 -1.13 9.20 22.65 0.21 -0.93 16 4 C -0.15 -5.58 5.89 -19.94 -0.12 -5.70 16 5 C 0.02 0.69 5.87 -20.10 -0.12 0.57 16 6 C -0.27 -11.99 9.42 22.72 0.21 -11.77 16 7 C 0.10 4.87 7.28 22.29 0.16 5.03 16 8 F -0.17 -7.93 17.26 44.97 0.78 -7.16 16 9 C -0.23 -12.53 8.67 22.80 0.20 -12.33 16 10 C 0.11 5.67 5.57 -21.32 -0.12 5.55 16 11 C -0.49 -25.53 9.05 23.47 0.21 -25.31 16 12 H 0.09 4.40 7.91 -2.91 -0.02 4.37 16 13 C 0.03 1.73 5.13 85.25 0.44 2.17 16 14 N -0.82 -42.94 10.96 21.82 0.24 -42.70 16 15 Si 0.99 37.36 29.59 68.60 2.03 39.39 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 18 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 19 C -0.23 -10.94 9.17 22.96 0.21 -10.73 16 20 C 0.14 5.00 10.59 84.93 0.90 5.90 16 21 N -0.56 -17.98 10.38 -192.42 -2.00 -19.98 16 22 C 0.39 10.21 7.73 133.08 1.03 11.24 16 23 N -0.84 -14.10 8.98 -55.41 -0.50 -14.60 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.08 1.11 8.09 -2.39 -0.02 1.10 16 26 H 0.08 0.89 6.55 -2.39 -0.02 0.87 16 27 H 0.14 4.00 6.30 -2.91 -0.02 3.99 16 28 H 0.13 4.92 6.24 -2.91 -0.02 4.90 16 29 H 0.11 6.25 6.15 -2.91 -0.02 6.23 16 30 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 31 H 0.12 5.08 6.21 -2.91 -0.02 5.07 16 32 H 0.16 5.41 6.20 -2.91 -0.02 5.40 16 33 H 0.41 6.09 8.95 -92.71 -0.83 5.26 16 34 H 0.42 4.41 6.78 -92.71 -0.63 3.78 16 Total: -1.00 -63.02 293.37 4.06 -58.96 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.28 Total: 28.45 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 3.78 Total: -42.36 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.26 Total: -77.28 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.78 Total: -7.16 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -63.02 4.06 -58.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245540768.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.054 kcal (2) G-P(sol) polarization free energy of solvation -63.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds