Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37950 * 120.37185 * 2 1 4 4 C 1.40273 * 118.37803 * 179.97438 * 3 2 1 5 5 C 1.47785 * 120.48153 * 179.97438 * 4 3 2 6 6 C 1.39133 * 120.27088 * 309.99988 * 5 4 3 7 7 C 1.38072 * 120.17354 * 179.97438 * 6 5 4 8 8 C 1.38858 * 120.72243 * 359.97438 * 7 6 5 9 9 C 1.37690 * 120.53597 * 0.02562 * 8 7 6 10 10 F 1.35096 * 120.09910 * 179.97438 * 9 8 7 11 11 C 1.41041 * 119.80332 * 0.02562 * 9 8 7 12 12 C 1.40772 * 120.35062 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99927 * 143.32488 * 12 11 9 14 14 C 1.40042 * 120.00076 * 323.32687 * 12 11 9 15 15 N 1.30814 * 119.99496 * 340.04578 * 14 12 11 16 16 Si 1.86796 * 119.99983 * 160.04214 * 14 12 11 17 17 H 1.48497 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47126 * 120.00031 * 16 14 12 19 19 H 1.48504 * 109.46883 * 239.99734 * 16 14 12 20 20 C 1.39586 * 119.03128 * 0.27023 * 4 3 2 21 21 N 1.31685 * 120.63828 * 359.42428 * 20 4 3 22 22 C 1.32546 * 121.77467 * 0.59790 * 21 20 4 23 23 N 1.38759 * 119.53925 * 179.67591 * 22 21 20 24 24 H 1.08998 * 109.46880 * 90.00714 * 1 2 3 25 25 H 1.08996 * 109.46904 * 210.00536 * 1 2 3 26 26 H 1.09003 * 109.46854 * 330.00286 * 1 2 3 27 27 H 1.08003 * 120.81418 * 359.94830 * 3 2 1 28 28 H 1.07995 * 119.91306 * 359.97438 * 6 5 4 29 29 H 1.08003 * 119.63933 * 179.69937 * 7 6 5 30 30 H 1.08004 * 119.73069 * 179.97438 * 8 7 6 31 31 H 0.97001 * 119.99846 * 180.02562 * 15 14 12 32 32 H 1.08001 * 119.67542 * 179.70775 * 20 4 3 33 33 H 0.97003 * 120.00178 * 180.02562 * 23 22 21 34 34 H 0.97002 * 119.99830 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1902 0.0000 4 6 3.6064 1.1414 0.0006 5 6 4.3999 2.3881 0.0000 6 6 4.1252 3.3939 -0.9213 7 6 4.8675 4.5581 -0.9196 8 6 5.8942 4.7435 -0.0033 9 6 6.1913 3.7676 0.9214 10 9 7.1925 3.9570 1.8085 11 6 5.4480 2.5691 0.9391 12 6 5.7423 1.5634 1.8791 13 1 4.9437 0.9822 2.3160 14 6 7.0705 1.3165 2.2479 15 7 8.0484 1.7132 1.4747 16 14 7.4458 0.4211 3.8437 17 1 6.1744 0.0818 4.5317 18 1 8.1967 -0.8253 3.5471 19 1 8.2650 1.2955 4.7211 20 6 4.2409 -0.1019 -0.0047 21 7 3.5368 -1.2147 0.0013 22 6 2.2114 -1.2021 0.0007 23 7 1.5158 -2.4027 0.0004 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6840 2.1365 -0.0008 28 1 3.3293 3.2636 -1.6395 29 1 4.6501 5.3312 -1.6418 30 1 6.4650 5.6604 -0.0167 31 1 8.9684 1.5419 1.7299 32 1 5.3198 -0.1516 -0.0091 33 1 0.5458 -2.4013 -0.0005 34 1 1.9996 -3.2435 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245541770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = 3.571809 kcal Electronic energy + Delta-G solvation = -20278.306799 eV Core-core repulsion = 17089.724657 eV Total energy + Delta-G solvation = -3188.582142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.98415 -39.69862 -37.33513 -34.41119 -33.69166 -32.96617 -30.97962 -29.58296 -27.74230 -26.47246 -25.26862 -22.65031 -21.93907 -20.88491 -19.70688 -17.47963 -17.11728 -16.85426 -15.89241 -15.35077 -14.69389 -14.29589 -14.24068 -13.98563 -13.72766 -13.69203 -13.33272 -12.81019 -12.51846 -12.36225 -12.26161 -11.90522 -11.46646 -11.34307 -11.31898 -11.16551 -10.67020 -10.59292 -10.30775 -9.99530 -9.54934 -9.10975 -8.95626 -8.77929 -7.74853 -7.26175 -6.91605 -6.79588 -4.43826 1.86342 1.98123 2.70408 2.80513 3.10691 3.14467 3.16705 3.95278 3.95584 4.50614 4.60030 5.15966 5.27095 5.33365 5.52792 5.70753 5.79135 5.83904 5.85142 6.02950 6.05838 6.17154 6.42897 6.46770 6.61976 6.71757 6.95474 7.02915 7.12123 7.27791 7.46075 7.55136 7.69867 7.72595 7.82001 7.91737 8.10787 8.37837 8.70436 8.80213 8.86223 10.13551 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.007600 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.399985 B = 3683.132021 C = 5015.082471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.215 4.215 3 C -0.046 4.046 4 C -0.088 4.088 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.214 4.214 8 C -0.135 4.135 9 C 0.041 3.959 10 F -0.143 7.143 11 C 0.104 3.896 12 C -0.459 4.459 13 H 0.085 0.915 14 C 0.081 3.919 15 N -0.772 5.772 16 Si 0.903 3.097 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.271 1.271 20 C 0.168 3.832 21 N -0.545 5.545 22 C 0.378 3.622 23 N -0.862 5.862 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.284 0.716 32 H 0.164 0.836 33 H 0.400 0.600 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -3.169 -2.048 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.222 4.222 3 C -0.071 4.071 4 C -0.092 4.092 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.233 4.233 8 C -0.154 4.154 9 C 0.021 3.979 10 F -0.122 7.122 11 C 0.101 3.899 12 C -0.488 4.488 13 H 0.103 0.897 14 C -0.140 4.140 15 N -0.395 5.395 16 Si 0.728 3.272 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.196 1.196 20 C 0.011 3.989 21 N -0.262 5.262 22 C 0.142 3.858 23 N -0.407 5.407 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.230 0.770 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.637 -3.930 -2.037 9.705 hybrid contribution -0.017 0.213 0.842 0.869 sum -8.654 -3.717 -1.195 9.494 Atomic orbital electron populations 1.20477 0.91498 1.01883 1.01297 1.19885 0.96115 0.92605 1.13602 1.21316 0.93357 0.96770 0.95696 1.19397 0.92209 0.94350 1.03243 1.18254 1.02649 0.93629 0.99566 1.20611 0.98607 0.93448 0.97802 1.20058 1.01216 0.98932 1.03097 1.20639 0.99590 0.98228 0.96934 1.17750 0.91629 0.95078 0.93443 1.91332 1.58944 1.95130 1.66784 1.17482 0.89868 0.91127 0.91454 1.19298 0.92759 1.16284 1.20416 0.89665 1.25801 0.95809 0.94999 0.97373 1.69751 1.01066 1.34484 1.34228 0.86312 0.79540 0.79217 0.82166 1.18369 1.19872 1.19624 1.22810 0.99912 0.85713 0.90473 1.67150 1.05388 1.32719 1.20926 1.18143 0.88614 0.85851 0.93164 1.42076 1.08286 1.05127 1.85255 0.92152 0.92660 0.91772 0.85744 0.88626 0.88371 0.88185 0.90499 0.81935 0.76976 0.77451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.58 36.01 0.34 -0.75 16 2 C -0.22 -3.48 5.91 -104.32 -0.62 -4.09 16 3 C -0.05 -0.83 9.34 -38.92 -0.36 -1.19 16 4 C -0.09 -1.85 4.96 -104.73 -0.52 -2.37 16 5 C -0.14 -3.19 5.54 -104.27 -0.58 -3.76 16 6 C -0.09 -1.82 9.52 -39.31 -0.37 -2.19 16 7 C -0.21 -4.47 10.02 -39.41 -0.40 -4.86 16 8 C -0.13 -3.06 9.99 -39.55 -0.40 -3.46 16 9 C 0.04 1.06 6.68 -38.72 -0.26 0.80 16 10 F -0.14 -3.83 14.27 2.25 0.03 -3.80 16 11 C 0.10 2.66 5.40 -106.48 -0.57 2.09 16 12 C -0.46 -11.81 6.69 -37.95 -0.25 -12.07 16 13 H 0.09 2.20 7.24 -52.49 -0.38 1.82 16 14 C 0.08 2.04 4.51 -17.31 -0.08 1.96 16 15 N -0.77 -20.07 11.13 55.55 0.62 -19.45 16 16 Si 0.90 19.30 29.60 -169.99 -5.03 14.27 16 17 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C 0.17 3.61 9.41 -17.11 -0.16 3.45 16 21 N -0.55 -10.86 10.37 -12.09 -0.13 -10.99 16 22 C 0.38 6.45 7.73 -155.06 -1.20 5.25 16 23 N -0.86 -10.84 8.97 31.14 0.28 -10.56 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.54 6.55 -51.93 -0.34 0.20 16 26 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 28 H 0.10 1.77 8.05 -52.49 -0.42 1.34 16 29 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 30 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 32 H 0.16 3.72 7.33 -52.49 -0.38 3.33 16 33 H 0.40 3.85 6.78 -40.82 -0.28 3.58 16 34 H 0.40 4.59 8.95 -40.82 -0.37 4.22 16 LS Contribution 294.54 15.07 4.44 4.44 Total: -1.00 -28.44 294.54 -8.63 -37.07 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.41 Total: 10.21 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -5.42 Total: -21.19 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.77 Total: -41.00 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.03 Total: -3.80 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.44 -8.63 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245541770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.642 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds