Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37950 * 120.37185 * 2 1 4 4 C 1.40273 * 118.37803 * 179.97438 * 3 2 1 5 5 C 1.47785 * 120.48153 * 179.97438 * 4 3 2 6 6 C 1.39133 * 120.27088 * 309.99988 * 5 4 3 7 7 C 1.38072 * 120.17354 * 179.97438 * 6 5 4 8 8 C 1.38858 * 120.72243 * 359.97438 * 7 6 5 9 9 C 1.37690 * 120.53597 * 0.02562 * 8 7 6 10 10 F 1.35096 * 120.09910 * 179.97438 * 9 8 7 11 11 C 1.41041 * 119.80332 * 0.02562 * 9 8 7 12 12 C 1.40772 * 120.35062 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99927 * 143.32488 * 12 11 9 14 14 C 1.40042 * 120.00076 * 323.32687 * 12 11 9 15 15 N 1.30814 * 119.99496 * 340.04578 * 14 12 11 16 16 Si 1.86796 * 119.99983 * 160.04214 * 14 12 11 17 17 H 1.48497 * 109.47257 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47126 * 120.00031 * 16 14 12 19 19 H 1.48504 * 109.46883 * 239.99734 * 16 14 12 20 20 C 1.39586 * 119.03128 * 0.27023 * 4 3 2 21 21 N 1.31685 * 120.63828 * 359.42428 * 20 4 3 22 22 C 1.32546 * 121.77467 * 0.59790 * 21 20 4 23 23 N 1.38759 * 119.53925 * 179.67591 * 22 21 20 24 24 H 1.08998 * 109.46880 * 90.00714 * 1 2 3 25 25 H 1.08996 * 109.46904 * 210.00536 * 1 2 3 26 26 H 1.09003 * 109.46854 * 330.00286 * 1 2 3 27 27 H 1.08003 * 120.81418 * 359.94830 * 3 2 1 28 28 H 1.07995 * 119.91306 * 359.97438 * 6 5 4 29 29 H 1.08003 * 119.63933 * 179.69937 * 7 6 5 30 30 H 1.08004 * 119.73069 * 179.97438 * 8 7 6 31 31 H 0.97001 * 119.99846 * 180.02562 * 15 14 12 32 32 H 1.08001 * 119.67542 * 179.70775 * 20 4 3 33 33 H 0.97003 * 120.00178 * 180.02562 * 23 22 21 34 34 H 0.97002 * 119.99830 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1902 0.0000 4 6 3.6064 1.1414 0.0006 5 6 4.3999 2.3881 0.0000 6 6 4.1252 3.3939 -0.9213 7 6 4.8675 4.5581 -0.9196 8 6 5.8942 4.7435 -0.0033 9 6 6.1913 3.7676 0.9214 10 9 7.1925 3.9570 1.8085 11 6 5.4480 2.5691 0.9391 12 6 5.7423 1.5634 1.8791 13 1 4.9437 0.9822 2.3160 14 6 7.0705 1.3165 2.2479 15 7 8.0484 1.7132 1.4747 16 14 7.4458 0.4211 3.8437 17 1 6.1744 0.0818 4.5317 18 1 8.1967 -0.8253 3.5471 19 1 8.2650 1.2955 4.7211 20 6 4.2409 -0.1019 -0.0047 21 7 3.5368 -1.2147 0.0013 22 6 2.2114 -1.2021 0.0007 23 7 1.5158 -2.4027 0.0004 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6840 2.1365 -0.0008 28 1 3.3293 3.2636 -1.6395 29 1 4.6501 5.3312 -1.6418 30 1 6.4650 5.6604 -0.0167 31 1 8.9684 1.5419 1.7299 32 1 5.3198 -0.1516 -0.0091 33 1 0.5458 -2.4013 -0.0005 34 1 1.9996 -3.2435 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245541770.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = -12.325595 kcal Electronic energy + Delta-G solvation = -20278.996162 eV Core-core repulsion = 17089.724657 eV Total energy + Delta-G solvation = -3189.271505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.94052 -41.13045 -39.03982 -35.77088 -35.49366 -34.30481 -32.52263 -31.32632 -29.24717 -27.74955 -27.09323 -24.10494 -23.47623 -22.64459 -21.29984 -19.32489 -18.41153 -18.16514 -17.62693 -17.14612 -16.38005 -15.99133 -15.77195 -15.61191 -15.30891 -15.26822 -14.66607 -14.53732 -13.83614 -13.73134 -13.51326 -13.38733 -13.27601 -13.07659 -12.93562 -12.71896 -12.36897 -12.27443 -11.95603 -11.44758 -11.29068 -10.93698 -10.38383 -10.23639 -9.39267 -9.07556 -8.70643 -8.30492 -6.33456 0.31953 0.53764 0.93340 1.10621 1.33083 1.42571 1.45950 2.18585 2.71842 2.77731 3.07540 3.53270 3.84014 4.06375 4.16103 4.28701 4.33739 4.40655 4.48050 4.67137 4.80097 4.85119 4.90693 5.01276 5.15957 5.26623 5.29334 5.38288 5.52534 5.70100 5.74268 5.86298 6.02948 6.06751 6.30526 6.49756 6.53975 6.70769 6.85522 6.96106 7.51507 8.31912 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.007600 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.399985 B = 3683.132021 C = 5015.082471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.205 4.205 3 C -0.045 4.045 4 C -0.115 4.115 5 C -0.135 4.135 6 C -0.091 4.091 7 C -0.198 4.198 8 C -0.142 4.142 9 C 0.001 3.999 10 F -0.159 7.159 11 C 0.072 3.928 12 C -0.481 4.481 13 H 0.071 0.929 14 C 0.044 3.956 15 N -0.811 5.811 16 Si 0.961 3.039 17 H -0.262 1.262 18 H -0.264 1.264 19 H -0.268 1.268 20 C 0.150 3.850 21 N -0.568 5.568 22 C 0.374 3.626 23 N -0.840 5.840 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.287 0.713 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 -3.409 -2.912 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.212 4.212 3 C -0.070 4.070 4 C -0.120 4.120 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.217 4.217 8 C -0.161 4.161 9 C -0.019 4.019 10 F -0.138 7.138 11 C 0.069 3.931 12 C -0.510 4.510 13 H 0.089 0.911 14 C -0.173 4.173 15 N -0.436 5.436 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.192 1.192 20 C -0.006 4.006 21 N -0.286 5.286 22 C 0.136 3.864 23 N -0.387 5.387 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.163 0.837 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.252 0.748 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.856 -4.188 -2.909 12.906 hybrid contribution 0.722 0.255 0.947 1.218 sum -11.135 -3.933 -1.962 11.971 Atomic orbital electron populations 1.20598 0.87634 1.03636 1.03136 1.20371 0.98709 0.91339 1.10793 1.21541 0.92003 0.98567 0.94912 1.19365 0.93635 0.93200 1.05795 1.18639 1.01505 0.94841 0.98725 1.21007 0.99345 0.92892 0.97645 1.20560 0.99313 0.99548 1.02266 1.20961 1.00287 0.98266 0.96580 1.18190 0.92386 0.96400 0.94923 1.91270 1.59757 1.95276 1.67538 1.17838 0.91365 0.91332 0.92548 1.19240 0.92816 1.17086 1.21844 0.91087 1.26452 0.95496 0.95582 0.99734 1.69796 1.01339 1.36787 1.35685 0.85457 0.79106 0.78441 0.78709 1.18599 1.18925 1.19241 1.22334 0.98801 0.86783 0.92679 1.67060 1.07097 1.32188 1.22206 1.18527 0.87972 0.87830 0.92070 1.42033 1.09176 1.04010 1.83526 0.90061 0.90459 0.90620 0.83721 0.85339 0.84417 0.86285 0.90278 0.85195 0.74849 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.58 71.24 0.68 -1.02 16 2 C -0.21 -6.00 5.91 -19.67 -0.12 -6.12 16 3 C -0.04 -1.53 9.34 22.70 0.21 -1.32 16 4 C -0.12 -4.89 4.96 -19.93 -0.10 -4.98 16 5 C -0.13 -6.27 5.54 -19.63 -0.11 -6.38 16 6 C -0.09 -3.65 9.52 22.45 0.21 -3.44 16 7 C -0.20 -7.81 10.02 22.38 0.22 -7.58 16 8 C -0.14 -6.40 9.99 22.29 0.22 -6.17 16 9 C 0.00 0.07 6.68 22.83 0.15 0.22 16 10 F -0.16 -8.95 14.27 44.97 0.64 -8.31 16 11 C 0.07 3.85 5.40 -21.07 -0.11 3.73 16 12 C -0.48 -26.17 6.69 23.33 0.16 -26.01 16 13 H 0.07 3.91 7.24 -2.91 -0.02 3.89 16 14 C 0.04 2.34 4.51 85.28 0.38 2.72 16 15 N -0.81 -44.54 11.13 21.85 0.24 -44.30 16 16 Si 0.96 41.42 29.60 68.60 2.03 43.45 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 C 0.15 6.70 9.41 85.04 0.80 7.50 16 21 N -0.57 -22.71 10.37 -192.16 -1.99 -24.70 16 22 C 0.37 12.00 7.73 133.15 1.03 13.02 16 23 N -0.84 -18.42 8.97 -55.39 -0.50 -18.92 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.10 6.55 -2.39 -0.02 1.08 16 26 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 27 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.13 4.29 8.05 -2.91 -0.02 4.27 16 29 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.29 14.50 8.30 -92.71 -0.77 13.73 16 32 H 0.13 6.50 7.33 -2.91 -0.02 6.47 16 33 H 0.42 6.19 6.78 -92.71 -0.63 5.56 16 34 H 0.40 8.24 8.95 -92.71 -0.83 7.41 16 Total: -1.00 -65.35 294.54 3.77 -61.59 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.30 Total: 27.01 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.64 Total: -35.81 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -2.25 Total: -87.92 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.64 Total: -8.31 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -65.35 3.77 -61.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245541770.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.262 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds