Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86801 * 119.99974 * 2 1 4 4 H 1.48497 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47070 * 299.99655 * 3 2 1 6 6 H 1.48495 * 109.47463 * 60.00139 * 3 2 1 7 7 C 1.39922 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00124 * 162.27408 * 7 2 1 9 9 C 1.41432 * 119.99944 * 342.27858 * 7 2 1 10 10 C 1.40742 * 120.17153 * 155.26479 * 9 7 2 11 11 C 1.37908 * 119.96894 * 179.72394 * 10 9 7 12 12 F 1.35092 * 119.83669 * 179.97438 * 11 10 9 13 13 C 1.38663 * 120.32661 * 0.02562 * 11 10 9 14 14 C 1.39656 * 120.35323 * 359.97438 * 13 11 10 15 15 C 1.48392 * 119.98904 * 179.97438 * 14 13 11 16 16 C 1.39778 * 120.90248 * 129.72229 * 15 14 13 17 17 C 1.37956 * 119.02306 * 179.73142 * 16 15 14 18 18 N 1.31938 * 120.88014 * 0.55607 * 17 16 15 19 19 C 1.31903 * 122.00103 * 359.71643 * 18 17 16 20 20 C 1.38001 * 120.88123 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.49082 * 179.97438 * 20 19 18 22 22 N 1.46892 * 109.47189 * 260.02467 * 21 20 19 23 23 C 1.38797 * 120.02413 * 359.97438 * 14 13 11 24 24 H 0.97000 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.02245 * 359.69631 * 10 9 7 26 26 H 1.08000 * 119.82419 * 180.02562 * 13 11 10 27 27 H 1.08001 * 120.49162 * 359.97438 * 16 15 14 28 28 H 1.08003 * 119.56442 * 180.29357 * 17 16 15 29 29 H 1.08003 * 119.55743 * 179.97438 * 19 18 17 30 30 H 1.09003 * 109.47100 * 20.02445 * 21 20 19 31 31 H 1.09003 * 109.47020 * 140.01901 * 21 20 19 32 32 H 1.00901 * 111.00434 * 56.04330 * 22 21 20 33 33 H 1.00904 * 111.00251 * 180.02562 * 22 21 20 34 34 H 1.07991 * 120.16376 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8837 2.3965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0495 -1.2341 -0.2842 9 6 1.3511 -2.4074 0.3739 10 6 1.8227 -3.6488 -0.0922 11 6 1.1825 -4.8124 0.2791 12 9 1.6371 -6.0025 -0.1703 13 6 0.0737 -4.7669 1.1105 14 6 -0.4058 -3.5425 1.5809 15 6 -1.5933 -3.5031 2.4699 16 6 -1.5678 -2.7879 3.6706 17 6 -2.6957 -2.7730 4.4648 18 7 -3.7830 -3.4303 4.1092 19 6 -3.8466 -4.1214 2.9876 20 6 -2.7653 -4.1850 2.1325 21 6 -2.8474 -4.9777 0.8535 22 7 -2.1943 -6.2799 1.0417 23 6 0.2280 -2.3624 1.2173 24 1 -0.4850 0.8401 0.0004 25 1 2.6853 -3.6902 -0.7407 26 1 -0.4212 -5.6832 1.3965 27 1 -0.6795 -2.2517 3.9703 28 1 -2.6872 -2.2193 5.3921 29 1 -4.7569 -4.6452 2.7354 30 1 -3.8933 -5.1309 0.5875 31 1 -2.3457 -4.4316 0.0547 32 1 -2.5997 -6.7788 1.8194 33 1 -2.2356 -6.8307 0.1973 34 1 -0.1406 -1.4144 1.5801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245561914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = 3.183020 kcal Electronic energy + Delta-G solvation = -20189.297377 eV Core-core repulsion = 17000.698376 eV Total energy + Delta-G solvation = -3188.599001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.66664 -39.96611 -37.34224 -35.13717 -33.70524 -32.34292 -30.52147 -29.56700 -28.42660 -25.46030 -25.01451 -23.42954 -21.57700 -20.86079 -20.17383 -17.74898 -16.31594 -16.18439 -15.84085 -15.30211 -14.90350 -14.84530 -14.58116 -14.41335 -14.32150 -14.03574 -13.33145 -13.15168 -12.91156 -12.40233 -12.19913 -11.97619 -11.63040 -11.38934 -11.20101 -11.04486 -10.55410 -10.35120 -10.19325 -9.79012 -9.38944 -9.09116 -9.03529 -8.73910 -8.24183 -7.51022 -7.26025 -6.87971 -4.49358 1.43595 1.53055 2.68250 2.76765 3.02300 3.07266 3.11847 3.85338 4.13010 4.45756 4.69824 4.87997 5.07452 5.17572 5.18764 5.36128 5.52151 5.69452 5.79151 5.95450 5.98562 6.17593 6.39018 6.57834 6.67675 6.80232 6.84040 7.02388 7.06810 7.12141 7.23997 7.44653 7.54661 7.70037 7.86768 7.92870 8.12872 8.27596 8.46110 8.74411 8.77489 10.06698 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.007119 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.533004 B = 3932.022839 C = 5273.362474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.252 4.252 11 C 0.101 3.899 12 F -0.168 7.168 13 C -0.243 4.243 14 C -0.045 4.045 15 C 0.057 3.943 16 C -0.166 4.166 17 C 0.093 3.907 18 N -0.501 5.501 19 C 0.097 3.903 20 C -0.138 4.138 21 C 0.111 3.889 22 N -0.829 5.829 23 C -0.141 4.141 24 H 0.282 0.718 25 H 0.102 0.898 26 H 0.158 0.842 27 H 0.135 0.865 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.335 0.665 33 H 0.343 0.657 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -4.523 3.498 7.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.118 3.882 10 C -0.273 4.273 11 C 0.082 3.918 12 F -0.147 7.147 13 C -0.263 4.263 14 C -0.045 4.045 15 C 0.048 3.952 16 C -0.186 4.186 17 C -0.063 4.063 18 N -0.210 5.210 19 C -0.061 4.061 20 C -0.140 4.140 21 C -0.019 4.019 22 N -0.359 5.359 23 C -0.161 4.161 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.175 0.825 27 H 0.153 0.847 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.050 0.950 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.646 -3.949 4.136 8.035 hybrid contribution 0.268 0.363 -0.965 1.065 sum -5.378 -3.586 3.171 7.200 Atomic orbital electron populations 1.69817 1.07574 1.29376 1.34876 1.25906 0.94740 1.01408 0.92101 0.86254 0.81056 0.80786 0.78667 1.18288 1.19923 1.19596 1.19569 0.98215 0.90876 1.40231 0.90093 1.17259 0.90820 0.91442 0.88710 1.21066 1.05447 0.91928 1.08857 1.17485 0.96098 0.79454 0.98726 1.91326 1.88997 1.46052 1.88342 1.21513 0.99612 0.99546 1.05615 1.18145 0.94080 0.93914 0.98409 1.19285 0.92825 0.90680 0.92390 1.22300 1.00239 1.00918 0.95168 1.22549 0.88496 0.96224 0.99063 1.67560 1.27710 1.08576 1.17203 1.22420 0.97364 0.96342 0.89929 1.20822 0.94438 1.00664 0.98108 1.20521 0.96192 0.90154 0.95057 1.58778 1.61370 1.05608 1.10123 1.21485 0.98284 0.96045 1.00284 0.90749 0.88019 0.82545 0.84748 0.83241 0.83726 0.95017 0.89106 0.85287 0.84364 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.61 10.98 55.55 0.61 -19.00 16 2 C 0.08 1.84 5.14 -17.35 -0.09 1.76 16 3 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.12 3.09 5.57 -106.87 -0.59 2.49 16 10 C -0.25 -6.20 9.76 -38.76 -0.38 -6.57 16 11 C 0.10 2.35 7.28 -39.55 -0.29 2.06 16 12 F -0.17 -3.72 17.26 2.25 0.04 -3.68 16 13 C -0.24 -5.28 8.06 -38.90 -0.31 -5.59 16 14 C -0.04 -0.99 4.86 -104.98 -0.51 -1.50 16 15 C 0.06 1.08 5.49 -104.58 -0.57 0.51 16 16 C -0.17 -2.90 9.65 -39.11 -0.38 -3.28 16 17 C 0.09 1.45 11.17 -17.61 -0.20 1.25 16 18 N -0.50 -8.17 10.35 -13.34 -0.14 -8.31 16 19 C 0.10 1.47 10.82 -17.61 -0.19 1.28 16 20 C -0.14 -2.29 5.41 -104.15 -0.56 -2.85 16 21 C 0.11 1.63 5.98 -4.98 -0.03 1.60 16 22 N -0.83 -10.90 6.29 -11.41 -0.07 -10.97 16 23 C -0.14 -3.46 8.19 -38.51 -0.32 -3.77 16 24 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 25 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 26 H 0.16 3.14 4.87 -52.49 -0.26 2.88 16 27 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 28 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.15 1.76 8.04 -52.48 -0.42 1.33 16 30 H 0.03 0.38 8.02 -51.93 -0.42 -0.03 16 31 H 0.09 1.59 7.27 -51.93 -0.38 1.22 16 32 H 0.33 3.79 8.99 -39.29 -0.35 3.44 16 33 H 0.34 3.86 9.08 -39.29 -0.36 3.51 16 34 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -27.53 295.01 -8.23 -35.77 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.32 Total: 13.43 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -4.76 Total: -24.68 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.40 Total: -38.27 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.53 -8.23 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245561914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.948 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds