Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47196 * 313.60637 * 3 2 1 5 5 C 1.36685 * 120.00491 * 264.39316 * 4 3 2 6 6 H 1.08001 * 119.99820 * 132.39018 * 5 4 3 7 7 C 1.39176 * 119.99764 * 312.39842 * 5 4 3 8 8 N 1.31273 * 120.00137 * 3.06243 * 7 5 4 9 9 Si 1.86801 * 119.99645 * 183.06517 * 7 5 4 10 10 H 1.48500 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46854 * 119.99860 * 9 7 5 12 12 H 1.48502 * 109.47165 * 239.99471 * 9 7 5 13 13 C 1.34779 * 119.99842 * 84.40030 * 4 3 2 14 14 O 1.21548 * 120.00037 * 4.91213 * 13 4 3 15 15 C 1.48235 * 120.00140 * 184.92019 * 13 4 3 16 16 C 1.39674 * 120.56038 * 174.26004 * 15 13 4 17 17 C 1.38683 * 118.25614 * 180.02562 * 16 15 13 18 18 N 1.32251 * 119.15959 * 359.72723 * 17 16 15 19 19 C 1.31889 * 121.06425 * 0.54692 * 18 17 16 20 20 C 1.50691 * 119.04233 * 179.71345 * 19 18 17 21 21 C 1.53002 * 117.49656 * 59.73308 * 20 19 18 22 22 C 1.53003 * 60.03490 * 252.47487 * 21 20 19 23 23 N 1.31577 * 121.91767 * 359.44174 * 19 18 17 24 24 H 1.08999 * 109.46394 * 193.60691 * 3 2 1 25 25 H 1.08997 * 109.46918 * 73.61607 * 3 2 1 26 26 H 0.96998 * 119.99928 * 180.02562 * 8 7 5 27 27 H 1.07993 * 120.87229 * 0.03851 * 16 15 13 28 28 H 1.07998 * 120.41416 * 179.97438 * 17 16 15 29 29 H 1.08999 * 115.55280 * 205.40142 * 20 19 18 30 30 H 1.09004 * 117.50253 * 359.97438 * 21 20 19 31 31 H 1.08999 * 117.49935 * 144.97147 * 21 20 19 32 32 H 1.09003 * 117.49320 * 107.49849 * 22 21 20 33 33 H 1.08989 * 117.49896 * 252.52270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9517 1.0001 5 6 3.4334 -0.5164 2.2513 6 1 3.0716 -1.0433 3.1218 7 6 4.2424 0.6058 2.4033 8 7 4.6327 1.2815 1.3477 9 14 4.7729 1.1504 4.1096 10 1 4.2039 0.2265 5.1234 11 1 6.2552 1.1287 4.1976 12 1 4.2821 2.5286 4.3643 13 6 3.2146 -2.2572 0.6864 14 8 3.0012 -2.6307 -0.4504 15 6 3.6043 -3.2375 1.7278 16 6 3.6142 -4.6057 1.4470 17 6 3.9862 -5.4804 2.4569 18 7 4.3213 -4.9937 3.6400 19 6 4.2964 -3.6960 3.8739 20 6 4.6810 -3.1915 5.2408 21 6 6.0902 -3.5140 5.7420 22 6 4.8812 -4.2297 6.3478 23 7 3.9503 -2.8285 2.9470 24 1 2.9708 0.9997 0.2418 25 1 2.9714 -0.2890 -0.9859 26 1 5.1969 2.0634 1.4537 27 1 3.3397 -4.9727 0.4692 28 1 4.0057 -6.5453 2.2781 29 1 4.2539 -2.2296 5.5243 30 1 6.7389 -4.0914 5.0832 31 1 6.5903 -2.7640 6.3549 32 1 4.7345 -5.2780 6.0874 33 1 4.5857 -3.9504 7.3590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251796968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = 91.456178 kcal Electronic energy + Delta-G solvation = -20425.954462 eV Core-core repulsion = 17261.103233 eV Total energy + Delta-G solvation = -3164.851228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76848 -38.73898 -36.77428 -35.86265 -34.86882 -33.26256 -31.73943 -31.30082 -27.97908 -25.49114 -24.65002 -24.05867 -22.21667 -21.48905 -19.62127 -18.29944 -17.51216 -16.96247 -15.88081 -15.36338 -15.22829 -14.97391 -14.75104 -14.47104 -14.11878 -13.66554 -13.48453 -13.14088 -12.89439 -12.11007 -12.01339 -11.98247 -11.41244 -11.35647 -11.29382 -11.10345 -10.67873 -10.58478 -10.45743 -10.34158 -10.23993 -10.16978 -9.36259 -9.30678 -8.92051 -8.45157 -7.75079 -6.54588 -4.28522 1.04942 1.39473 3.07695 3.15777 3.20476 3.27398 3.46516 3.58871 3.95702 4.02484 4.08327 4.31982 4.45167 4.59027 4.76225 5.05143 5.14193 5.20907 5.24145 5.35885 5.43662 5.55513 5.75208 5.83173 5.98607 6.12515 6.25698 6.31775 6.40966 6.73020 6.81504 7.37777 7.45533 7.57215 8.27187 8.33844 8.51992 8.87270 9.05941 9.50883 10.49086 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.008717 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.171324 B = 3211.506715 C = 4617.939502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.217 3.783 3 C 0.188 3.812 4 N -0.406 5.406 5 C -0.304 4.304 6 H 0.119 0.881 7 C 0.045 3.955 8 N -0.875 5.875 9 Si 0.927 3.073 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.516 3.484 14 O -0.584 6.584 15 C 0.165 3.835 16 C -0.193 4.193 17 C 0.136 3.864 18 N -0.522 5.522 19 C 0.327 3.673 20 C -0.095 4.095 21 C -0.157 4.157 22 C -0.157 4.157 23 N -0.438 5.438 24 H 0.162 0.838 25 H 0.104 0.896 26 H 0.275 0.725 27 H 0.151 0.849 28 H 0.166 0.834 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -6.868 6.475 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.101 4.101 3 C 0.063 3.937 4 N -0.123 5.123 5 C -0.433 4.433 6 H 0.136 0.864 7 C -0.160 4.160 8 N -0.513 5.513 9 Si 0.753 3.247 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.304 3.696 14 O -0.468 6.468 15 C 0.017 3.983 16 C -0.216 4.216 17 C -0.030 4.030 18 N -0.238 5.238 19 C 0.060 3.940 20 C -0.115 4.115 21 C -0.196 4.196 22 C -0.195 4.195 23 N -0.153 5.153 24 H 0.178 0.822 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.169 0.831 28 H 0.183 0.817 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.563 -6.492 6.711 9.683 hybrid contribution 0.576 0.068 -0.165 0.603 sum 3.139 -6.424 6.545 9.693 Atomic orbital electron populations 1.80983 1.13686 1.10443 1.10036 1.30517 0.96252 0.91655 0.91678 1.19445 0.78498 1.00713 0.95083 1.43235 1.52598 1.04067 1.12421 1.20174 1.27801 1.12056 0.83259 0.86359 1.25596 0.94784 0.96466 0.99168 1.69472 1.33995 1.18401 1.29431 0.85849 0.78690 0.78219 0.81915 1.18558 1.20405 1.20838 1.18071 0.82102 0.83347 0.86094 1.90675 1.56503 1.79604 1.19994 1.21700 0.92596 0.92316 0.91681 1.22877 1.02005 0.94358 1.02396 1.23034 0.91945 1.00373 0.87684 1.67914 1.16231 1.16579 1.23043 1.22342 0.91878 0.84853 0.94886 1.20639 1.01433 1.00778 0.88610 1.22937 0.90264 1.03188 1.03190 1.22993 1.01556 0.98561 0.96410 1.69274 1.09024 1.36665 1.00329 0.82159 0.87807 0.91415 0.83083 0.81697 0.85228 0.88695 0.88239 0.87424 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.82 18.54 42.15 0.78 -10.04 16 2 C 0.22 4.77 15.71 -20.76 -0.33 4.44 16 3 C 0.19 4.07 5.36 -6.83 -0.04 4.04 16 4 N -0.41 -9.54 2.47 -118.89 -0.29 -9.84 16 5 C -0.30 -7.19 7.53 -15.04 -0.11 -7.30 16 6 H 0.12 2.83 5.96 -52.49 -0.31 2.52 16 7 C 0.05 1.05 5.35 -17.44 -0.09 0.95 16 8 N -0.88 -20.73 10.96 55.51 0.61 -20.12 16 9 Si 0.93 18.58 29.56 -169.99 -5.02 13.56 16 10 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.52 12.04 7.56 -12.15 -0.09 11.95 16 14 O -0.58 -14.24 16.09 5.32 0.09 -14.16 16 15 C 0.17 3.46 6.68 -82.64 -0.55 2.91 16 16 C -0.19 -3.32 9.72 -38.88 -0.38 -3.70 16 17 C 0.14 2.00 11.31 -17.21 -0.19 1.80 16 18 N -0.52 -8.55 9.33 -10.75 -0.10 -8.65 16 19 C 0.33 5.90 7.31 -157.30 -1.15 4.75 16 20 C -0.09 -1.45 6.23 -91.73 -0.57 -2.03 16 21 C -0.16 -2.01 10.23 -26.73 -0.27 -2.28 16 22 C -0.16 -1.90 10.01 -26.69 -0.27 -2.17 16 23 N -0.44 -9.05 6.45 -7.34 -0.05 -9.10 16 24 H 0.16 3.53 5.49 -51.93 -0.28 3.25 16 25 H 0.10 2.14 7.53 -51.93 -0.39 1.75 16 26 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 27 H 0.15 2.38 7.75 -52.49 -0.41 1.98 16 28 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.33 7.54 -51.93 -0.39 0.94 16 33 H 0.10 0.97 8.14 -51.94 -0.42 0.54 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -27.81 300.92 -6.54 -34.35 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.04 Total: 6.09 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -4.05 Total: 13.36 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.95 Total: -57.74 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.81 -6.54 -34.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251796968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.806 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds