Wall clock time and date at job start Mon Mar 30 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47196 * 313.60637 * 3 2 1 5 5 C 1.36685 * 120.00491 * 264.39316 * 4 3 2 6 6 H 1.08001 * 119.99820 * 132.39018 * 5 4 3 7 7 C 1.39176 * 119.99764 * 312.39842 * 5 4 3 8 8 N 1.31273 * 120.00137 * 3.06243 * 7 5 4 9 9 Si 1.86801 * 119.99645 * 183.06517 * 7 5 4 10 10 H 1.48500 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46854 * 119.99860 * 9 7 5 12 12 H 1.48502 * 109.47165 * 239.99471 * 9 7 5 13 13 C 1.34779 * 119.99842 * 84.40030 * 4 3 2 14 14 O 1.21548 * 120.00037 * 4.91213 * 13 4 3 15 15 C 1.48235 * 120.00140 * 184.92019 * 13 4 3 16 16 C 1.39674 * 120.56038 * 174.26004 * 15 13 4 17 17 C 1.38683 * 118.25614 * 180.02562 * 16 15 13 18 18 N 1.32251 * 119.15959 * 359.72723 * 17 16 15 19 19 C 1.31889 * 121.06425 * 0.54692 * 18 17 16 20 20 C 1.50691 * 119.04233 * 179.71345 * 19 18 17 21 21 C 1.53002 * 117.49656 * 59.73308 * 20 19 18 22 22 C 1.53003 * 60.03490 * 252.47487 * 21 20 19 23 23 N 1.31577 * 121.91767 * 359.44174 * 19 18 17 24 24 H 1.08999 * 109.46394 * 193.60691 * 3 2 1 25 25 H 1.08997 * 109.46918 * 73.61607 * 3 2 1 26 26 H 0.96998 * 119.99928 * 180.02562 * 8 7 5 27 27 H 1.07993 * 120.87229 * 0.03851 * 16 15 13 28 28 H 1.07998 * 120.41416 * 179.97438 * 17 16 15 29 29 H 1.08999 * 115.55280 * 205.40142 * 20 19 18 30 30 H 1.09004 * 117.50253 * 359.97438 * 21 20 19 31 31 H 1.08999 * 117.49935 * 144.97147 * 21 20 19 32 32 H 1.09003 * 117.49320 * 107.49849 * 22 21 20 33 33 H 1.08989 * 117.49896 * 252.52270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9517 1.0001 5 6 3.4334 -0.5164 2.2513 6 1 3.0716 -1.0433 3.1218 7 6 4.2424 0.6058 2.4033 8 7 4.6327 1.2815 1.3477 9 14 4.7729 1.1504 4.1096 10 1 4.2039 0.2265 5.1234 11 1 6.2552 1.1287 4.1976 12 1 4.2821 2.5286 4.3643 13 6 3.2146 -2.2572 0.6864 14 8 3.0012 -2.6307 -0.4504 15 6 3.6043 -3.2375 1.7278 16 6 3.6142 -4.6057 1.4470 17 6 3.9862 -5.4804 2.4569 18 7 4.3213 -4.9937 3.6400 19 6 4.2964 -3.6960 3.8739 20 6 4.6810 -3.1915 5.2408 21 6 6.0902 -3.5140 5.7420 22 6 4.8812 -4.2297 6.3478 23 7 3.9503 -2.8285 2.9470 24 1 2.9708 0.9997 0.2418 25 1 2.9714 -0.2890 -0.9859 26 1 5.1969 2.0634 1.4537 27 1 3.3397 -4.9727 0.4692 28 1 4.0057 -6.5453 2.2781 29 1 4.2539 -2.2296 5.5243 30 1 6.7389 -4.0914 5.0832 31 1 6.5903 -2.7640 6.3549 32 1 4.7345 -5.2780 6.0874 33 1 4.5857 -3.9504 7.3590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251796968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:31 Heat of formation + Delta-G solvation = 76.842207 kcal Electronic energy + Delta-G solvation = -20426.588171 eV Core-core repulsion = 17261.103233 eV Total energy + Delta-G solvation = -3165.484938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.16699 -40.43901 -37.94530 -37.60239 -36.66428 -34.67400 -33.51653 -32.64594 -29.70623 -27.15661 -25.95333 -25.59114 -23.17562 -22.84870 -21.21985 -19.94446 -19.06593 -18.41495 -17.48119 -16.95178 -16.70540 -16.47590 -16.15706 -16.02280 -15.42387 -15.19780 -14.96267 -14.67287 -14.61676 -13.89873 -13.77435 -13.24612 -13.06599 -12.95467 -12.75554 -12.34806 -12.28014 -11.96504 -11.81563 -11.74480 -11.60737 -11.37052 -11.12195 -10.96978 -10.20563 -10.03448 -9.47277 -8.30289 -6.10303 -0.40525 0.10176 1.45469 1.47847 1.54657 1.65557 1.78421 1.88388 2.36829 2.62845 2.73224 2.89239 3.00542 3.12182 3.35512 3.43665 3.85960 3.96710 3.98172 4.12725 4.21041 4.27996 4.54682 4.64265 4.82564 4.85220 5.00883 5.05756 5.20329 5.35984 5.43322 5.68610 5.78205 6.03894 6.48044 6.54290 7.02776 7.16856 7.31457 7.72450 8.73910 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014786 B = 0.008717 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.171324 B = 3211.506715 C = 4617.939502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.228 3.772 3 C 0.194 3.806 4 N -0.419 5.419 5 C -0.314 4.314 6 H 0.113 0.887 7 C 0.011 3.989 8 N -0.898 5.898 9 Si 0.977 3.023 10 H -0.252 1.252 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.507 3.493 14 O -0.603 6.603 15 C 0.132 3.868 16 C -0.192 4.192 17 C 0.154 3.846 18 N -0.516 5.516 19 C 0.318 3.682 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.131 4.131 23 N -0.467 5.467 24 H 0.159 0.841 25 H 0.111 0.889 26 H 0.277 0.723 27 H 0.163 0.837 28 H 0.219 0.781 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 -8.550 8.185 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.090 4.090 3 C 0.068 3.932 4 N -0.136 5.136 5 C -0.442 4.442 6 H 0.130 0.870 7 C -0.191 4.191 8 N -0.536 5.536 9 Si 0.801 3.199 10 H -0.176 1.176 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.296 3.704 14 O -0.489 6.489 15 C -0.015 4.015 16 C -0.215 4.215 17 C -0.012 4.012 18 N -0.231 5.231 19 C 0.052 3.948 20 C -0.149 4.149 21 C -0.187 4.187 22 C -0.169 4.169 23 N -0.183 5.183 24 H 0.176 0.824 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.181 0.819 28 H 0.235 0.765 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.317 -8.161 8.428 12.191 hybrid contribution 0.351 0.451 -0.705 0.908 sum 3.668 -7.710 7.722 11.512 Atomic orbital electron populations 1.80975 1.14063 1.11065 1.10665 1.30574 0.96216 0.91085 0.91108 1.19424 0.78120 1.00444 0.95216 1.43408 1.52987 1.04463 1.12723 1.20183 1.28524 1.12317 0.83199 0.86993 1.26209 0.94604 0.96364 1.01941 1.69532 1.34567 1.18813 1.30693 0.85096 0.78057 0.77856 0.78917 1.17551 1.20522 1.20730 1.18577 0.81411 0.83766 0.86632 1.90631 1.57278 1.80049 1.20942 1.21570 0.94904 0.93282 0.91741 1.23093 1.01627 0.93076 1.03710 1.23863 0.89030 1.02249 0.86097 1.68059 1.15860 1.15618 1.23576 1.22812 0.91394 0.85279 0.95321 1.20738 1.03876 1.01716 0.88545 1.23038 0.89415 1.03429 1.02817 1.23085 0.99841 0.97611 0.96336 1.69120 1.10237 1.38209 1.00692 0.82423 0.87135 0.91223 0.81922 0.76504 0.86288 0.89168 0.86436 0.87432 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.52 18.54 20.01 0.37 -22.15 16 2 C 0.23 10.16 15.71 89.44 1.41 11.57 16 3 C 0.19 8.56 5.36 84.58 0.45 9.02 16 4 N -0.42 -20.10 2.47 -648.33 -1.60 -21.71 16 5 C -0.31 -15.10 7.53 84.16 0.63 -14.47 16 6 H 0.11 5.48 5.96 -2.91 -0.02 5.46 16 7 C 0.01 0.53 5.35 85.00 0.45 0.99 16 8 N -0.90 -43.03 10.96 21.70 0.24 -42.80 16 9 Si 0.98 37.94 29.56 68.60 2.03 39.97 16 10 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 12 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 13 C 0.51 24.11 7.56 86.90 0.66 24.77 16 14 O -0.60 -29.87 16.09 -3.87 -0.06 -29.93 16 15 C 0.13 5.53 6.68 41.95 0.28 5.81 16 16 C -0.19 -6.31 9.72 22.72 0.22 -6.09 16 17 C 0.15 4.06 11.31 84.74 0.96 5.01 16 18 N -0.52 -15.57 9.33 -187.93 -1.75 -17.32 16 19 C 0.32 11.10 7.31 138.78 1.01 12.12 16 20 C -0.13 -3.75 6.23 -11.51 -0.07 -3.82 16 21 C -0.15 -3.42 10.23 30.60 0.31 -3.11 16 22 C -0.13 -2.76 10.01 30.62 0.31 -2.46 16 23 N -0.47 -19.31 6.45 -177.12 -1.14 -20.45 16 24 H 0.16 7.12 5.49 -2.39 -0.01 7.11 16 25 H 0.11 4.68 7.53 -2.39 -0.02 4.66 16 26 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 27 H 0.16 4.88 7.75 -2.91 -0.02 4.86 16 28 H 0.22 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.12 3.67 8.14 -2.39 -0.02 3.65 16 30 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.11 2.29 7.54 -2.39 -0.02 2.27 16 33 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.27 300.92 5.86 -54.41 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.16 Total: 20.64 kcal Atomic # 6 Polarization: 32.71 SS G_CDS: 6.63 Total: 39.34 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -3.89 Total: -124.43 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -60.27 5.86 -54.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251796968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.255 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds