Wall clock time and date at job start Mon Mar 30 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47302 * 305.00182 * 3 2 1 5 5 C 1.50700 * 109.47108 * 184.99921 * 3 2 1 6 6 H 1.08005 * 120.00124 * 240.00392 * 5 3 2 7 7 C 1.37881 * 119.99899 * 60.00063 * 5 3 2 8 8 N 1.31515 * 119.99934 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00132 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47341 * 89.99864 * 9 7 5 11 11 H 1.48505 * 109.47310 * 210.00238 * 9 7 5 12 12 H 1.48503 * 109.47129 * 330.00112 * 9 7 5 13 13 N 1.46497 * 109.46949 * 65.00515 * 3 2 1 14 14 C 1.40046 * 119.99805 * 274.99544 * 13 3 2 15 15 C 1.36769 * 120.40005 * 0.02562 * 14 13 3 16 16 C 1.40262 * 119.24308 * 180.02562 * 15 14 13 17 17 C 1.35214 * 120.04137 * 0.02562 * 16 15 14 18 18 N 1.36026 * 120.82041 * 359.97212 * 17 16 15 19 19 C 1.46499 * 119.61564 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46802 * 240.00035 * 19 18 17 21 21 F 1.39901 * 109.47014 * 120.00584 * 19 18 17 22 22 C 1.34669 * 120.76349 * 0.25786 * 18 17 16 23 23 O 1.22074 * 120.03622 * 179.71681 * 22 18 17 24 24 H 1.08994 * 109.47211 * 59.99507 * 1 2 3 25 25 H 1.09000 * 109.46723 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46733 * 299.99918 * 1 2 3 27 27 H 1.08996 * 109.47070 * 240.00152 * 2 1 3 28 28 H 1.09000 * 109.47200 * 119.99784 * 2 1 3 29 29 H 0.96999 * 120.00127 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00572 * 94.99981 * 13 3 2 31 31 H 1.08005 * 120.38040 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.97720 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.59342 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.47391 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8800 -1.3812 10 1 6.5539 -0.3521 -0.7598 11 1 6.3836 0.9215 -2.8166 12 1 6.5576 2.0719 -0.6889 13 7 1.6526 2.0974 1.2518 14 6 0.3877 2.6865 1.3715 15 6 -0.4924 2.6547 0.3251 16 6 -1.7527 3.2529 0.4713 17 6 -2.0863 3.8526 1.6364 18 7 -1.2126 3.8854 2.6785 19 6 -1.6013 4.5428 3.9287 20 9 -0.7137 5.5894 4.2007 21 9 -1.5629 3.6149 4.9750 22 6 0.0076 3.3255 2.5723 23 8 0.7830 3.3672 3.5142 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0612 -2.9498 30 1 2.2721 2.1231 1.9978 31 1 -0.2198 2.1753 -0.6035 32 1 -2.4567 3.2351 -0.3474 33 1 -3.0584 4.3112 1.7409 34 1 -2.6121 4.9391 3.8318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:57 Heat of formation + Delta-G solvation = -87.086427 kcal Electronic energy + Delta-G solvation = -21443.769939 eV Core-core repulsion = 17820.487336 eV Total energy + Delta-G solvation = -3623.282603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12670 -47.21448 -40.87325 -36.98751 -36.71590 -33.64457 -31.99213 -31.02521 -28.80631 -26.65281 -26.24736 -23.47604 -22.64408 -22.38130 -19.77514 -18.48590 -18.04334 -17.70173 -17.05003 -16.17676 -16.01522 -15.55037 -15.15647 -14.84789 -14.32829 -14.00876 -13.93151 -13.55036 -13.46520 -13.09644 -12.75433 -12.24882 -12.00478 -11.88699 -11.80641 -11.62961 -11.33849 -10.99524 -10.92833 -10.45803 -10.25053 -10.18458 -9.84861 -9.54005 -9.10588 -8.70282 -8.43503 -6.34518 -6.19496 -4.27794 1.34650 2.22499 2.24361 3.22757 3.29565 3.33548 3.53388 3.96276 4.05889 4.27244 4.53482 4.72715 4.76734 5.05133 5.12217 5.43538 5.63666 6.01577 6.18438 6.24227 6.43549 6.51357 6.61707 6.87169 6.90600 6.99440 7.13952 7.17303 7.38389 7.63088 7.75375 8.01687 8.03414 8.29084 8.61883 8.84233 9.39209 10.85507 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.005116 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.628037 B = 5471.701623 C = 5980.267327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.274 3.726 4 H 0.044 0.956 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.141 3.859 15 C -0.202 4.202 16 C -0.115 4.115 17 C -0.006 4.006 18 N -0.537 5.537 19 C 0.474 3.526 20 F -0.185 7.185 21 F -0.185 7.185 22 C 0.514 3.486 23 O -0.535 6.535 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.265 0.735 30 H 0.398 0.602 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 6.165 5.222 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.172 3.828 4 H 0.062 0.938 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.312 5.312 14 C 0.027 3.973 15 C -0.233 4.233 16 C -0.138 4.138 17 C -0.126 4.126 18 N -0.264 5.264 19 C 0.339 3.661 20 F -0.166 7.166 21 F -0.167 7.167 22 C 0.312 3.688 23 O -0.416 6.416 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.233 0.767 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.193 5.992 5.524 15.507 hybrid contribution 1.194 -0.067 0.164 1.207 sum -11.999 5.925 5.688 14.541 Atomic orbital electron populations 1.22207 0.98843 0.99262 1.00503 1.22052 0.92338 1.00038 1.02804 1.18864 0.94754 0.88819 0.80344 0.93823 1.21224 0.90621 1.38839 1.06318 0.91965 1.24850 0.98793 0.94612 0.95259 1.69857 1.35234 1.37817 1.09444 0.86423 0.84664 0.78614 0.77331 1.20479 1.21005 1.19802 1.45567 1.10904 1.56502 1.18258 1.18625 0.89807 0.96273 0.92557 1.20920 0.93991 1.08084 1.00335 1.20334 0.97437 0.99797 0.96248 1.21074 0.95469 1.07860 0.88208 1.46197 1.15780 1.50768 1.13682 1.21430 0.92635 0.76345 0.75702 1.93107 1.72771 1.57213 1.93530 1.93104 1.97236 1.67546 1.58775 1.17085 0.81126 0.81045 0.89510 1.90993 1.50082 1.60432 1.40091 0.93223 0.95168 0.93468 0.88014 0.94563 0.92505 0.76705 0.83714 0.84316 0.82989 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.23 37.16 0.31 -2.60 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.56 2.20 -69.08 -0.15 6.41 16 4 H 0.04 1.12 6.52 -51.93 -0.34 0.78 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -23.74 11.29 55.43 0.63 -23.12 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.69 -15.23 5.17 -53.11 -0.27 -15.50 16 14 C 0.14 2.77 5.53 -83.50 -0.46 2.31 16 15 C -0.20 -3.44 6.80 -39.35 -0.27 -3.70 16 16 C -0.11 -1.45 10.00 -39.90 -0.40 -1.85 16 17 C -0.01 -0.06 10.30 -16.77 -0.17 -0.24 16 18 N -0.54 -7.78 2.88 -125.28 -0.36 -8.14 16 19 C 0.47 5.66 5.42 59.85 0.32 5.98 16 20 F -0.18 -2.68 16.92 2.25 0.04 -2.64 16 21 F -0.19 -2.66 16.95 2.25 0.04 -2.62 16 22 C 0.51 9.86 7.22 -15.17 -0.11 9.75 16 23 O -0.54 -11.91 15.67 4.85 0.08 -11.84 16 24 H 0.05 0.91 6.39 -51.93 -0.33 0.57 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.89 5.39 -51.92 -0.28 0.61 16 27 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.40 9.02 8.00 -40.82 -0.33 8.69 16 31 H 0.15 2.63 4.04 -52.48 -0.21 2.42 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.15 0.93 7.82 -52.49 -0.41 0.52 16 34 H 0.15 0.83 7.72 -51.93 -0.40 0.43 16 LS Contribution 287.14 15.07 4.33 4.33 Total: -1.00 -30.74 287.14 -5.44 -36.18 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.42 Total: 7.50 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.47 Total: 0.22 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.01 Total: -46.76 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.74 -5.44 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.902 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds