Wall clock time and date at job start Mon Mar 30 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 H 1.08990 * 109.47234 * 54.99604 * 3 2 1 5 5 C 1.50700 * 109.47079 * 175.00215 * 3 2 1 6 6 H 1.08002 * 119.99920 * 120.00556 * 5 3 2 7 7 C 1.37881 * 119.99721 * 299.99245 * 5 3 2 8 8 N 1.31509 * 120.00040 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99668 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47154 * 90.00469 * 9 7 5 11 11 H 1.48498 * 109.46913 * 210.00495 * 9 7 5 12 12 H 1.48498 * 109.47186 * 329.99975 * 9 7 5 13 13 N 1.46501 * 109.46933 * 295.00007 * 3 2 1 14 14 C 1.40038 * 120.00452 * 84.99946 * 13 3 2 15 15 C 1.36775 * 120.39511 * 359.97438 * 14 13 3 16 16 C 1.40264 * 119.23895 * 180.02562 * 15 14 13 17 17 C 1.35214 * 120.04309 * 359.97438 * 16 15 14 18 18 N 1.36026 * 120.82041 * 0.02562 * 17 16 15 19 19 C 1.46499 * 119.61564 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46802 * 240.00035 * 19 18 17 21 21 F 1.39901 * 109.47014 * 120.00584 * 19 18 17 22 22 C 1.34669 * 120.76349 * 0.25786 * 18 17 16 23 23 O 1.22074 * 120.03622 * 179.71681 * 22 18 17 24 24 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47164 * 300.00305 * 1 2 3 26 26 H 1.09000 * 109.46916 * 60.00654 * 1 2 3 27 27 H 1.08999 * 109.47164 * 239.99695 * 2 1 3 28 28 H 1.09000 * 109.47266 * 120.00041 * 2 1 3 29 29 H 0.96999 * 120.00163 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00177 * 264.99962 * 13 3 2 31 31 H 1.07995 * 120.38043 * 0.04804 * 15 14 13 32 32 H 1.07999 * 119.97548 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.59342 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.47391 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3818 10 1 6.4417 2.1142 2.0848 11 1 6.4396 -0.3097 2.1549 12 1 6.6136 0.8415 0.0278 13 7 1.6524 2.0974 -1.2518 14 6 0.3876 2.6865 -1.3716 15 6 -0.4925 2.6547 -0.3251 16 6 -1.7532 3.2518 -0.4717 17 6 -2.0871 3.8506 -1.6371 18 7 -1.2135 3.8835 -2.6792 19 6 -1.6030 4.5390 -3.9301 20 9 -1.5633 3.6099 -4.9754 21 9 -0.7168 5.5864 -4.2034 22 6 0.0033 3.3156 -2.5762 23 8 0.7749 3.3485 -3.5215 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0609 2.9499 30 1 2.2719 2.1231 -1.9978 31 1 -0.2198 2.1756 0.6035 32 1 -2.4572 3.2340 0.3471 33 1 -3.0599 4.3078 -1.7422 34 1 -2.6141 4.9347 -3.8335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:59 Heat of formation + Delta-G solvation = -108.441995 kcal Electronic energy + Delta-G solvation = -21445.096516 eV Core-core repulsion = 17820.887866 eV Total energy + Delta-G solvation = -3624.208650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.13010 -48.24448 -42.15603 -38.57526 -38.03573 -35.29311 -33.58486 -32.62486 -30.23519 -28.21615 -27.49181 -25.12366 -24.07336 -23.65148 -21.42662 -19.73493 -19.33089 -18.73265 -18.46611 -17.54762 -17.33799 -17.09617 -16.59878 -16.47758 -15.78766 -15.32244 -15.03091 -14.89856 -14.59742 -14.56464 -14.37082 -13.60821 -13.35092 -13.21755 -13.11340 -13.07792 -12.92161 -12.78740 -12.74374 -12.14728 -12.00316 -11.85780 -11.48236 -11.07863 -10.96014 -10.50295 -9.93773 -8.21662 -7.76426 -6.34976 0.09911 0.99913 1.17719 1.39051 1.40368 1.50485 2.35416 2.69226 2.71213 2.93249 3.08295 3.38599 3.76685 3.77982 3.86698 4.32692 4.49529 4.51718 4.61646 4.72246 4.88011 5.00498 5.24964 5.29732 5.38382 5.44486 5.58206 5.65383 5.76734 5.87841 5.98358 6.13343 6.46026 6.69388 6.90142 7.08137 7.36013 8.83720 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.028354 B = 0.005115 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.267888 B = 5472.879248 C = 5979.738554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.289 3.711 4 H 0.021 0.979 5 C -0.556 4.556 6 H 0.048 0.952 7 C 0.027 3.973 8 N -0.905 5.905 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.146 4.146 17 C 0.047 3.953 18 N -0.536 5.536 19 C 0.461 3.539 20 F -0.203 7.203 21 F -0.204 7.204 22 C 0.497 3.503 23 O -0.588 6.588 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.386 0.614 31 H 0.129 0.871 32 H 0.183 0.817 33 H 0.228 0.772 34 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 7.523 -4.889 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.186 3.814 4 H 0.039 0.961 5 C -0.594 4.594 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.543 5.543 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.343 5.343 14 C -0.027 4.027 15 C -0.195 4.195 16 C -0.168 4.168 17 C -0.074 4.074 18 N -0.260 5.260 19 C 0.328 3.672 20 F -0.185 7.185 21 F -0.186 7.186 22 C 0.298 3.702 23 O -0.474 6.474 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.219 0.781 31 H 0.147 0.853 32 H 0.200 0.800 33 H 0.245 0.755 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -16.855 7.380 -5.192 19.118 hybrid contribution 2.028 -0.352 -0.235 2.072 sum -14.826 7.028 -5.427 17.282 Atomic orbital electron populations 1.22042 0.95894 1.00447 1.00926 1.21889 0.95014 0.99143 1.00576 1.18433 0.93166 0.89053 0.80772 0.96137 1.21537 0.92425 1.39119 1.06328 0.93375 1.25541 1.02673 0.94216 0.94965 1.69946 1.36613 1.38078 1.09648 0.85525 0.79979 0.77917 0.78006 1.20008 1.20075 1.20118 1.45129 1.12452 1.59664 1.17010 1.18812 0.89822 0.99838 0.94233 1.21252 0.95069 1.04713 0.98422 1.20809 0.96324 1.00902 0.98812 1.22323 0.96406 1.02896 0.85738 1.46546 1.14855 1.48924 1.15710 1.22783 0.95256 0.75280 0.73888 1.93070 1.97362 1.68331 1.59724 1.93070 1.74133 1.57842 1.93513 1.17118 0.82545 0.81678 0.88849 1.90944 1.52232 1.62959 1.41304 0.93571 0.92298 0.93270 0.96211 0.90504 0.92288 0.78149 0.85314 0.79981 0.75541 0.74745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.23 71.98 0.59 -4.65 16 2 C -0.13 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.29 14.67 2.20 44.25 0.10 14.76 16 4 H 0.02 1.12 6.52 -2.39 -0.02 1.11 16 5 C -0.56 -31.07 8.73 25.60 0.22 -30.84 16 6 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 7 C 0.03 1.47 5.29 84.66 0.45 1.92 16 8 N -0.90 -49.91 11.29 21.45 0.24 -49.67 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.72 -33.89 5.17 -321.96 -1.67 -35.55 16 14 C 0.08 3.28 5.53 38.22 0.21 3.49 16 15 C -0.16 -5.37 6.80 22.42 0.15 -5.22 16 16 C -0.15 -2.98 10.00 22.06 0.22 -2.76 16 17 C 0.05 0.73 10.30 83.35 0.86 1.59 16 18 N -0.54 -13.61 2.88 -668.40 -1.93 -15.54 16 19 C 0.46 9.06 5.42 127.77 0.69 9.75 16 20 F -0.20 -5.41 16.92 44.97 0.76 -4.65 16 21 F -0.20 -5.48 16.95 44.97 0.76 -4.72 16 22 C 0.50 19.15 7.22 84.99 0.61 19.76 16 23 O -0.59 -27.47 15.67 -5.56 -0.09 -27.55 16 24 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.06 2.12 6.39 -2.39 -0.02 2.11 16 26 H 0.05 1.86 5.39 -2.39 -0.01 1.85 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 4.04 5.95 -2.39 -0.01 4.03 16 29 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.39 19.28 8.00 -92.71 -0.74 18.54 16 31 H 0.13 4.65 4.04 -2.91 -0.01 4.64 16 32 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.23 0.31 7.82 -2.91 -0.02 0.29 16 34 H 0.24 0.65 7.72 -2.39 -0.02 0.63 16 Total: -1.00 -75.86 287.14 4.80 -71.05 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.41 Total: 19.16 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 4.28 Total: 1.89 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -3.35 Total: -100.76 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.09 Total: -27.55 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 1.52 Total: -9.36 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.86 4.80 -71.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.387 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds