Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47611 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47312 * 30.00163 * 3 2 1 6 6 H 1.48499 * 109.47099 * 150.00146 * 3 2 1 7 7 C 1.38813 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99730 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99809 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99869 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46672 * 35.00761 * 10 9 7 12 12 C 1.52996 * 109.47551 * 275.00502 * 10 9 7 13 13 O 1.42894 * 109.47156 * 294.99923 * 12 10 9 14 14 C 1.52997 * 109.47026 * 155.00110 * 10 9 7 15 15 N 1.46504 * 109.47425 * 305.00764 * 14 10 9 16 16 C 1.34776 * 119.99851 * 180.02562 * 15 14 10 17 17 O 1.21578 * 120.00437 * 359.97438 * 16 15 14 18 18 C 1.47622 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31874 * 126.45441 * 0.02562 * 18 16 15 20 20 N 1.28474 * 110.15039 * 179.73332 * 19 18 16 21 21 H 0.96998 * 124.92996 * 180.23386 * 20 19 18 22 22 C 1.35727 * 110.13365 * 0.39830 * 20 19 18 23 23 C 1.35542 * 107.11540 * 359.60962 * 22 20 19 24 24 F 1.35102 * 127.24390 * 180.26564 * 23 22 20 25 25 H 0.97009 * 119.99891 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00255 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46838 * 55.00135 * 12 10 9 28 28 H 1.08998 * 109.47041 * 174.99898 * 12 10 9 29 29 H 0.96696 * 114.00366 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47484 * 185.00550 * 14 10 9 31 31 H 1.08998 * 109.46892 * 65.00618 * 14 10 9 32 32 H 0.96994 * 119.99912 * 359.97438 * 15 14 10 33 33 H 1.08002 * 126.44421 * 179.87755 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5645 -3.2065 -0.5903 12 6 4.2587 -2.9752 1.4359 13 8 5.0752 -2.0674 2.1784 14 6 5.4990 -2.2590 -0.6112 15 7 5.3611 -1.6640 -1.9429 16 6 6.4588 -1.3869 -2.6742 17 8 7.5635 -1.6303 -2.2287 18 6 6.3197 -0.7879 -4.0162 19 7 5.1907 -0.4728 -4.6205 20 7 5.4336 0.0337 -5.7760 21 1 4.7584 0.3430 -6.3999 22 6 6.7721 0.0697 -5.9983 23 6 7.3733 -0.4429 -4.8970 24 9 8.6990 -0.5924 -4.6841 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.2746 -3.0416 1.8999 28 1 4.7245 -3.9607 1.4293 29 1 5.2109 -2.3246 3.1006 30 1 6.0104 -3.2180 -0.6931 31 1 6.0785 -1.5916 0.0266 32 1 4.4797 -1.4701 -2.2985 33 1 7.2655 0.4414 -6.8842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278145682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -35.266577 kcal Electronic energy + Delta-G solvation = -20857.696748 eV Core-core repulsion = 17256.581184 eV Total energy + Delta-G solvation = -3601.115564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.69939 -42.79756 -39.19448 -37.20363 -34.99722 -33.57211 -32.12166 -31.34468 -30.69327 -28.87358 -25.86515 -23.73545 -23.11210 -21.94079 -20.20095 -19.97124 -19.01151 -17.91569 -16.97078 -16.83963 -16.49902 -16.03083 -15.78801 -15.13329 -14.99025 -14.61064 -14.36850 -14.26024 -13.57313 -13.37359 -13.07571 -12.81229 -12.60973 -12.36180 -11.57461 -11.16197 -10.99470 -10.85912 -10.68665 -10.11730 -9.95454 -9.75449 -9.62981 -9.44225 -9.13675 -8.98681 -8.68604 -7.32870 -5.81316 -3.17216 1.36396 1.67189 2.47454 3.29162 3.38498 3.44171 3.45618 3.47520 4.10879 4.41591 4.58087 4.63297 4.83819 4.96854 5.21054 5.22961 5.39191 5.49080 5.83488 5.93859 5.95575 6.15243 6.24475 6.40138 6.58300 6.63182 6.78014 7.40884 7.86631 7.92235 8.13702 8.37517 8.42824 9.15807 9.88667 10.08664 11.36358 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.006091 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.046438 B = 4595.913017 C = 5726.310152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.011 3.989 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.114 3.886 15 N -0.700 5.700 16 C 0.596 3.404 17 O -0.534 6.534 18 C -0.027 4.027 19 N -0.223 5.223 20 N -0.369 5.369 21 H 0.457 0.543 22 C -0.042 4.042 23 C 0.035 3.965 24 F -0.101 7.101 25 H 0.259 0.741 26 H 0.366 0.634 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.366 0.634 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.416 0.584 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -2.367 -10.662 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.381 5.381 10 C 0.061 3.939 11 H 0.094 0.906 12 C -0.022 4.022 13 O -0.368 6.368 14 C -0.010 4.010 15 N -0.352 5.352 16 C 0.379 3.621 17 O -0.410 6.410 18 C -0.189 4.189 19 N -0.059 5.059 20 N -0.086 5.086 21 H 0.303 0.697 22 C -0.187 4.187 23 C 0.005 3.995 24 F -0.080 7.080 25 H 0.069 0.931 26 H 0.199 0.801 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.211 0.789 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.253 0.747 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.282 -2.334 -10.724 15.740 hybrid contribution 0.740 1.229 -0.026 1.434 sum 12.022 -1.106 -10.750 16.165 Atomic orbital electron populations 1.69704 1.05113 1.25884 1.57183 1.24620 0.95135 0.97160 1.01645 0.86610 0.79581 0.84979 0.77846 1.21085 1.21850 1.19928 1.19045 0.80415 0.94700 1.43577 0.89121 1.42738 1.03889 1.01811 1.89686 1.20579 0.90397 0.90671 0.92296 0.90630 1.22990 0.93861 0.90428 0.94878 1.86526 1.72332 1.52018 1.25949 1.21685 0.98613 0.98555 0.82115 1.45871 1.09400 1.62102 1.17807 1.16723 0.84918 0.78388 0.82110 1.90816 1.25558 1.53742 1.70864 1.22308 0.89084 1.09152 0.98385 1.73794 1.24791 1.12266 0.95091 1.43078 1.06772 1.45121 1.13595 0.69684 1.22649 0.85051 1.09143 1.01821 1.17184 0.79495 1.07783 0.95017 1.91530 1.27779 1.93989 1.94681 0.93057 0.80053 0.92747 0.95042 0.78883 0.91302 0.90294 0.74690 0.78563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 22.25 27.73 -169.99 -4.71 17.54 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.81 6.52 56.52 0.37 -6.44 16 7 C -0.25 -6.67 10.41 -15.06 -0.16 -6.82 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.74 -16.88 4.31 -53.43 -0.23 -17.11 16 10 C 0.17 3.17 2.84 -67.93 -0.19 2.97 16 11 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 12 C 0.06 0.99 6.86 37.16 0.25 1.25 16 13 O -0.56 -9.57 12.64 -35.23 -0.45 -10.02 16 14 C 0.11 1.99 5.12 -4.04 -0.02 1.97 16 15 N -0.70 -12.35 5.38 -61.32 -0.33 -12.68 16 16 C 0.60 10.83 7.82 -12.43 -0.10 10.74 16 17 O -0.53 -11.02 16.67 5.30 0.09 -10.94 16 18 C -0.03 -0.43 7.13 -82.74 -0.59 -1.02 16 19 N -0.22 -3.09 11.91 33.43 0.40 -2.69 16 20 N -0.37 -3.37 6.86 30.63 0.21 -3.16 16 21 H 0.46 2.21 8.96 -190.44 -1.71 0.51 16 22 C -0.04 -0.37 12.06 -16.79 -0.20 -0.57 16 23 C 0.04 0.48 8.03 -39.27 -0.32 0.16 16 24 F -0.10 -1.52 17.03 2.25 0.04 -1.48 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.37 8.75 5.66 -40.82 -0.23 8.52 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 4.41 9.12 45.56 0.42 4.82 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.51 7.39 -51.93 -0.38 1.13 16 32 H 0.42 7.46 7.86 -40.82 -0.32 7.14 16 33 H 0.20 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -35.99 298.94 -5.05 -41.04 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -3.93 Total: 13.88 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -1.42 Total: 8.89 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: 0.82 Total: -63.42 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.36 Total: -20.95 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.99 -5.05 -41.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278145682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.775 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds