Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48503 * 109.47611 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47312 * 30.00163 * 3 2 1 6 6 H 1.48499 * 109.47099 * 150.00146 * 3 2 1 7 7 C 1.38813 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99730 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99809 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99869 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46672 * 35.00761 * 10 9 7 12 12 C 1.52996 * 109.47551 * 275.00502 * 10 9 7 13 13 O 1.42894 * 109.47156 * 294.99923 * 12 10 9 14 14 C 1.52997 * 109.47026 * 155.00110 * 10 9 7 15 15 N 1.46504 * 109.47425 * 305.00764 * 14 10 9 16 16 C 1.34776 * 119.99851 * 180.02562 * 15 14 10 17 17 O 1.21578 * 120.00437 * 359.97438 * 16 15 14 18 18 C 1.47622 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31874 * 126.45441 * 0.02562 * 18 16 15 20 20 N 1.28474 * 110.15039 * 179.73332 * 19 18 16 21 21 H 0.96998 * 124.92996 * 180.23386 * 20 19 18 22 22 C 1.35727 * 110.13365 * 0.39830 * 20 19 18 23 23 C 1.35542 * 107.11540 * 359.60962 * 22 20 19 24 24 F 1.35102 * 127.24390 * 180.26564 * 23 22 20 25 25 H 0.97009 * 119.99891 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00255 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46838 * 55.00135 * 12 10 9 28 28 H 1.08998 * 109.47041 * 174.99898 * 12 10 9 29 29 H 0.96696 * 114.00366 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47484 * 185.00550 * 14 10 9 31 31 H 1.08998 * 109.46892 * 65.00618 * 14 10 9 32 32 H 0.96994 * 119.99912 * 359.97438 * 15 14 10 33 33 H 1.08002 * 126.44421 * 179.87755 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5645 -3.2065 -0.5903 12 6 4.2587 -2.9752 1.4359 13 8 5.0752 -2.0674 2.1784 14 6 5.4990 -2.2590 -0.6112 15 7 5.3611 -1.6640 -1.9429 16 6 6.4588 -1.3869 -2.6742 17 8 7.5635 -1.6303 -2.2287 18 6 6.3197 -0.7879 -4.0162 19 7 5.1907 -0.4728 -4.6205 20 7 5.4336 0.0337 -5.7760 21 1 4.7584 0.3430 -6.3999 22 6 6.7721 0.0697 -5.9983 23 6 7.3733 -0.4429 -4.8970 24 9 8.6990 -0.5924 -4.6841 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 -0.0007 27 1 3.2746 -3.0416 1.8999 28 1 4.7245 -3.9607 1.4293 29 1 5.2109 -2.3246 3.1006 30 1 6.0104 -3.2180 -0.6931 31 1 6.0785 -1.5916 0.0266 32 1 4.4797 -1.4701 -2.2985 33 1 7.2655 0.4414 -6.8842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278145682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -67.717620 kcal Electronic energy + Delta-G solvation = -20859.103931 eV Core-core repulsion = 17256.581184 eV Total energy + Delta-G solvation = -3602.522747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.72104 -43.72828 -40.60222 -38.68694 -36.46700 -35.29693 -33.57396 -32.81614 -31.62814 -30.56476 -27.18072 -25.40256 -24.60609 -22.86912 -21.72780 -21.26350 -20.08217 -19.67620 -18.28232 -18.24154 -17.51245 -17.26991 -16.96304 -16.59889 -16.10542 -16.05220 -15.90351 -15.48402 -15.03887 -14.95243 -14.64251 -14.45465 -14.19883 -13.58270 -13.19988 -12.85102 -12.65336 -12.39917 -12.14428 -11.88562 -11.79466 -11.40371 -11.02213 -10.75468 -10.73270 -10.15320 -10.00719 -9.32727 -8.00907 -5.32668 0.27450 0.79510 1.36873 1.39790 1.46278 1.70753 2.08996 2.15141 2.48336 3.02697 3.30586 3.46042 3.52808 3.70687 3.81939 3.89419 3.99578 4.37563 4.40342 4.52462 4.61790 4.79399 4.97410 5.15296 5.18070 5.36444 5.78355 5.91536 6.22689 6.35285 6.62236 7.02652 7.06181 7.09467 7.83481 8.02479 9.20043 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.006091 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.046438 B = 4595.913017 C = 5726.310152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.052 4.052 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.220 4.220 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.165 3.835 11 H 0.083 0.917 12 C 0.067 3.933 13 O -0.584 6.584 14 C 0.124 3.876 15 N -0.700 5.700 16 C 0.592 3.408 17 O -0.568 6.568 18 C -0.060 4.060 19 N -0.245 5.245 20 N -0.345 5.345 21 H 0.477 0.523 22 C 0.010 3.990 23 C -0.006 4.006 24 F -0.116 7.116 25 H 0.256 0.744 26 H 0.362 0.638 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.388 0.612 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.116 -2.027 -12.296 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.244 4.244 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.350 4.350 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.056 3.944 11 H 0.101 0.899 12 C -0.014 4.014 13 O -0.391 6.391 14 C 0.000 4.000 15 N -0.351 5.351 16 C 0.377 3.623 17 O -0.446 6.446 18 C -0.220 4.220 19 N -0.084 5.084 20 N -0.064 5.064 21 H 0.328 0.672 22 C -0.136 4.136 23 C -0.036 4.036 24 F -0.095 7.095 25 H 0.065 0.935 26 H 0.195 0.805 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.237 0.763 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 12.585 -2.029 -12.351 17.749 hybrid contribution 0.366 1.037 0.410 1.174 sum 12.951 -0.992 -11.941 17.644 Atomic orbital electron populations 1.69844 1.06688 1.26312 1.60063 1.25235 0.95770 1.00251 1.03129 0.85629 0.78264 0.81215 0.77920 1.20419 1.22629 1.19395 1.19034 0.82069 0.93594 1.40336 0.91211 1.42726 1.02493 1.03365 1.89782 1.20845 0.90562 0.88918 0.94030 0.89915 1.22787 0.93589 0.92044 0.92990 1.86470 1.72117 1.52697 1.27839 1.21570 0.97540 0.99059 0.81790 1.45878 1.09290 1.62104 1.17805 1.17093 0.84319 0.77804 0.83054 1.90778 1.26558 1.55284 1.71988 1.22059 0.90723 1.11191 0.98037 1.73720 1.24385 1.13402 0.96851 1.43275 1.07868 1.42872 1.12415 0.67203 1.23371 0.84108 1.04835 1.01279 1.17582 0.78866 1.10547 0.96608 1.91480 1.28689 1.94397 1.94963 0.93487 0.80532 0.94495 0.91062 0.76335 0.89398 0.91903 0.74893 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.04 13.97 21.65 0.30 -60.74 16 2 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 3 Si 0.94 46.36 27.73 68.60 1.90 48.26 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.27 -12.83 6.52 99.48 0.65 -12.18 16 7 C -0.22 -11.85 10.41 84.03 0.87 -10.98 16 8 H 0.07 4.03 8.06 -2.91 -0.02 4.00 16 9 N -0.74 -33.45 4.31 -322.94 -1.39 -34.84 16 10 C 0.17 5.92 2.84 44.99 0.13 6.05 16 11 H 0.08 2.86 8.08 -2.38 -0.02 2.85 16 12 C 0.07 2.10 6.86 71.98 0.49 2.59 16 13 O -0.58 -18.77 12.64 -148.98 -1.88 -20.65 16 14 C 0.12 4.22 5.12 86.38 0.44 4.66 16 15 N -0.70 -24.50 5.38 -466.19 -2.51 -27.01 16 16 C 0.59 21.63 7.82 86.72 0.68 22.30 16 17 O -0.57 -23.75 16.67 -3.96 -0.07 -23.82 16 18 C -0.06 -1.85 7.13 42.44 0.30 -1.55 16 19 N -0.25 -6.40 11.91 -48.15 -0.57 -6.97 16 20 N -0.34 -5.11 6.86 -56.99 -0.39 -5.50 16 21 H 0.48 2.69 8.96 -219.99 -1.97 0.72 16 22 C 0.01 0.14 12.06 83.47 1.01 1.14 16 23 C -0.01 -0.16 8.03 22.47 0.18 0.02 16 24 F -0.12 -3.43 17.03 44.97 0.77 -2.67 16 25 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 26 H 0.36 17.00 5.66 -92.71 -0.52 16.48 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.39 8.52 9.12 -74.06 -0.68 7.85 16 30 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.06 2.37 7.39 -2.39 -0.02 2.35 16 32 H 0.41 14.77 7.86 -92.71 -0.73 14.04 16 33 H 0.25 0.49 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -80.27 298.94 -2.02 -82.29 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -2.75 Total: 29.92 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 4.57 Total: 21.73 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -4.57 Total: -135.07 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.95 Total: -44.47 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.77 Total: -2.67 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -80.27 -2.02 -82.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278145682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.574 kcal (2) G-P(sol) polarization free energy of solvation -80.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds