Wall clock time and date at job start Mon Mar 30 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21583 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.47618 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31864 * 126.46238 * 359.68257 * 18 16 15 20 20 N 1.28466 * 110.15794 * 179.85940 * 19 18 16 21 21 H 0.97001 * 124.93620 * 180.16796 * 20 19 18 22 22 C 1.35736 * 110.13102 * 0.41539 * 20 19 18 23 23 C 1.35545 * 107.11561 * 359.75081 * 22 20 19 24 24 F 1.35098 * 127.24241 * 179.97438 * 23 22 20 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 28 28 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 29 29 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 31 31 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 32 32 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 33 33 H 1.07995 * 126.43980 * 179.71524 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3964 -6.2367 -2.2064 18 6 -0.5047 -4.7473 -4.0015 19 7 -0.2175 -3.6131 -4.6096 20 7 -0.7698 -3.5801 -5.7691 21 1 -0.6967 -2.8457 -6.3985 22 6 -1.4749 -4.7200 -5.9832 23 6 -1.3311 -5.4916 -4.8780 24 9 -1.8645 -6.7133 -4.6587 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 3.0418 -4.9245 1.4445 28 1 2.9707 -3.2069 1.9060 29 1 1.3816 -4.5196 3.1134 30 1 1.7558 -5.6780 -0.6740 31 1 0.3131 -4.9198 0.0415 32 1 1.0071 -3.4867 -2.2909 33 1 -2.0440 -4.9657 -6.8675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278145686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:04 Heat of formation + Delta-G solvation = -38.354760 kcal Electronic energy + Delta-G solvation = -20754.223914 eV Core-core repulsion = 17152.974437 eV Total energy + Delta-G solvation = -3601.249478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.60512 -42.68845 -39.03792 -37.03645 -34.83893 -33.45173 -32.02430 -31.14943 -30.57107 -28.29822 -25.72473 -23.80058 -23.24547 -21.84244 -20.07507 -19.84620 -18.87715 -17.58076 -16.87260 -16.54463 -16.39063 -15.93970 -15.69806 -15.02905 -14.83805 -14.55557 -14.30935 -14.06099 -13.47020 -13.33612 -13.03154 -12.77275 -12.49822 -11.94664 -11.38562 -11.04503 -10.85552 -10.81735 -10.54535 -10.10609 -9.85949 -9.72587 -9.63960 -9.32529 -9.03404 -8.94325 -8.52136 -6.99842 -5.77392 -3.07666 1.48206 1.77813 2.57493 3.40614 3.43283 3.46084 3.47049 3.59175 4.22737 4.51657 4.55759 4.73233 4.96869 5.07274 5.33421 5.46536 5.56245 5.61212 5.93405 6.06654 6.09657 6.26695 6.40657 6.55012 6.68468 6.78554 6.93445 7.52564 7.65075 8.02570 8.24751 8.39255 8.58196 9.51396 10.07121 10.43646 11.44098 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.005549 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.517462 B = 5045.045142 C = 6393.382371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.695 5.695 16 C 0.595 3.405 17 O -0.538 6.538 18 C -0.024 4.024 19 N -0.220 5.220 20 N -0.371 5.371 21 H 0.456 0.544 22 C -0.044 4.044 23 C 0.035 3.965 24 F -0.102 7.102 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.027 0.973 28 H 0.049 0.951 29 H 0.364 0.636 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.416 0.584 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -8.541 -10.632 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.346 5.346 16 C 0.378 3.622 17 O -0.414 6.414 18 C -0.187 4.187 19 N -0.057 5.057 20 N -0.087 5.087 21 H 0.302 0.698 22 C -0.188 4.188 23 C 0.005 3.995 24 F -0.080 7.080 25 H 0.065 0.935 26 H 0.224 0.776 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.208 0.792 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.254 0.746 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.738 -8.078 -10.702 13.429 hybrid contribution 0.051 0.768 0.002 0.770 sum 0.788 -7.310 -10.700 12.983 Atomic orbital electron populations 1.69678 1.05071 1.25729 1.56773 1.24740 0.95431 0.97596 1.02672 0.86301 0.78508 0.83718 0.77762 1.21296 1.21777 1.21363 1.19165 0.90857 0.84071 1.43710 0.91255 1.42367 1.06074 0.99016 1.87944 1.20599 0.95062 0.87010 0.91925 0.91580 1.23030 0.86505 0.97293 0.95333 1.86577 1.32144 1.92084 1.25509 1.21625 0.99720 0.97086 0.82207 1.45826 1.49403 1.21790 1.17580 1.16712 0.79032 0.84285 0.82139 1.90808 1.57408 1.22436 1.70719 1.22319 1.05008 0.92943 0.98406 1.73798 1.17351 1.19839 0.94704 1.43072 1.35952 1.16346 1.13314 0.69790 1.22626 1.04907 0.89498 1.01818 1.17194 1.02421 0.84844 0.95079 1.91523 1.83969 1.37950 1.94601 0.93457 0.77632 0.95487 0.93307 0.79175 0.91791 0.90282 0.74632 0.78667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.71 -17.29 4.51 -53.43 -0.24 -17.53 16 10 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16 11 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 12 C 0.06 1.05 6.85 37.16 0.25 1.30 16 13 O -0.56 -10.15 12.64 -35.23 -0.45 -10.60 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 15 N -0.69 -13.04 5.39 -61.32 -0.33 -13.37 16 16 C 0.60 11.46 7.82 -12.43 -0.10 11.36 16 17 O -0.54 -11.66 16.67 5.29 0.09 -11.57 16 18 C -0.02 -0.41 7.13 -82.74 -0.59 -1.00 16 19 N -0.22 -3.23 11.91 33.43 0.40 -2.83 16 20 N -0.37 -3.62 6.86 30.64 0.21 -3.41 16 21 H 0.46 2.47 8.96 -190.44 -1.71 0.76 16 22 C -0.04 -0.42 12.06 -16.79 -0.20 -0.62 16 23 C 0.03 0.50 8.03 -39.26 -0.32 0.18 16 24 F -0.10 -1.61 17.03 2.25 0.04 -1.57 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.39 10.54 7.80 -40.82 -0.32 10.23 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.36 4.75 9.12 45.56 0.42 5.17 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.63 7.39 -51.93 -0.38 1.25 16 32 H 0.42 8.01 7.86 -40.82 -0.32 7.69 16 33 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 302.06 15.07 4.55 4.55 Total: -1.00 -35.11 302.06 -5.41 -40.52 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -3.97 Total: 16.44 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.41 Total: 9.40 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.76 Total: -63.98 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.36 Total: -22.17 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.11 -5.41 -40.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278145686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.168 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds