Wall clock time and date at job start Mon Mar 30 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21583 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.47618 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31864 * 126.46238 * 359.68257 * 18 16 15 20 20 N 1.28466 * 110.15794 * 179.85940 * 19 18 16 21 21 H 0.97001 * 124.93620 * 180.16796 * 20 19 18 22 22 C 1.35736 * 110.13102 * 0.41539 * 20 19 18 23 23 C 1.35545 * 107.11561 * 359.75081 * 22 20 19 24 24 F 1.35098 * 127.24241 * 179.97438 * 23 22 20 25 25 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 28 28 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 29 29 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 31 31 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 32 32 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 33 33 H 1.07995 * 126.43980 * 179.71524 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3964 -6.2367 -2.2064 18 6 -0.5047 -4.7473 -4.0015 19 7 -0.2175 -3.6131 -4.6096 20 7 -0.7698 -3.5801 -5.7691 21 1 -0.6967 -2.8457 -6.3985 22 6 -1.4749 -4.7200 -5.9832 23 6 -1.3311 -5.4916 -4.8780 24 9 -1.8645 -6.7133 -4.6587 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 3.0418 -4.9245 1.4445 28 1 2.9707 -3.2069 1.9060 29 1 1.3816 -4.5196 3.1134 30 1 1.7558 -5.6780 -0.6740 31 1 0.3131 -4.9198 0.0415 32 1 1.0071 -3.4867 -2.2909 33 1 -2.0440 -4.9657 -6.8675 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278145686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:04 Heat of formation + Delta-G solvation = -69.869173 kcal Electronic energy + Delta-G solvation = -20755.590482 eV Core-core repulsion = 17152.974437 eV Total energy + Delta-G solvation = -3602.616045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.70176 -43.69661 -40.54119 -38.57796 -36.38992 -35.22387 -33.42137 -32.65185 -31.58505 -30.06783 -27.12547 -25.67590 -24.62123 -22.84277 -21.64400 -21.19059 -19.91150 -19.36766 -18.21861 -18.13424 -17.48089 -17.25476 -16.94103 -16.50525 -16.08998 -16.04129 -15.68954 -15.49397 -15.18991 -14.87340 -14.57946 -14.37338 -13.66127 -13.55499 -13.02802 -12.73395 -12.62157 -12.28735 -12.11265 -11.90319 -11.72205 -11.36082 -10.93654 -10.71502 -10.69400 -10.10699 -9.96667 -8.98843 -7.87502 -5.17116 0.31368 0.81985 1.50622 1.52985 1.58810 1.74179 2.11884 2.21785 2.59508 3.06341 3.44433 3.55378 3.63237 3.84379 3.91095 3.96496 4.05838 4.41903 4.45084 4.57006 4.62656 4.86502 5.01174 5.19684 5.23094 5.41924 5.56036 5.94833 6.30443 6.40155 6.66469 7.07972 7.11022 7.38406 8.10550 8.36377 9.35252 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.005549 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.517462 B = 5045.045142 C = 6393.382371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.302 1.302 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.080 0.920 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.694 5.694 16 C 0.590 3.410 17 O -0.572 6.572 18 C -0.059 4.059 19 N -0.243 5.243 20 N -0.345 5.345 21 H 0.477 0.523 22 C 0.010 3.990 23 C -0.007 4.007 24 F -0.117 7.117 25 H 0.248 0.752 26 H 0.371 0.629 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.386 0.614 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.414 0.586 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -8.439 -12.344 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.229 1.229 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.051 3.949 11 H 0.098 0.902 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.344 5.344 16 C 0.375 3.625 17 O -0.451 6.451 18 C -0.220 4.220 19 N -0.081 5.081 20 N -0.064 5.064 21 H 0.328 0.672 22 C -0.136 4.136 23 C -0.037 4.037 24 F -0.096 7.096 25 H 0.056 0.944 26 H 0.203 0.797 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.234 0.766 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 1.797 -7.988 -12.406 14.865 hybrid contribution -0.249 0.670 0.463 0.851 sum 1.549 -7.318 -11.944 14.093 Atomic orbital electron populations 1.69858 1.06718 1.25775 1.59414 1.25511 0.96147 1.00913 1.03892 0.85253 0.77067 0.79482 0.78121 1.20126 1.22888 1.20763 1.19591 0.91494 0.84833 1.40980 0.90014 1.42472 1.05318 1.00245 1.88181 1.20864 0.95047 0.85235 0.93711 0.90188 1.22859 0.86536 0.98728 0.93369 1.86530 1.32883 1.92256 1.27432 1.21513 0.98783 0.97593 0.81828 1.45825 1.49468 1.21577 1.17549 1.17131 0.78371 0.83757 0.83196 1.90764 1.58644 1.23780 1.71916 1.22049 1.07253 0.94654 0.98007 1.73720 1.18590 1.19292 0.96505 1.43268 1.34052 1.17016 1.12081 0.67220 1.23366 1.01929 0.87085 1.01248 1.17598 1.04105 0.85329 0.96687 1.91473 1.84301 1.38907 1.94892 0.94357 0.79699 0.91433 0.94373 0.76644 0.89821 0.92729 0.74934 0.72996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.24 -12.53 9.93 84.03 0.83 -11.69 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.72 -35.30 4.51 -322.94 -1.46 -36.75 16 10 C 0.16 6.13 2.84 44.99 0.13 6.26 16 11 H 0.08 2.84 8.08 -2.39 -0.02 2.82 16 12 C 0.07 2.20 6.85 71.98 0.49 2.69 16 13 O -0.58 -20.74 12.64 -148.98 -1.88 -22.62 16 14 C 0.13 4.74 5.12 86.38 0.44 5.19 16 15 N -0.69 -26.65 5.39 -466.18 -2.51 -29.16 16 16 C 0.59 23.45 7.82 86.72 0.68 24.13 16 17 O -0.57 -25.76 16.67 -3.98 -0.07 -25.83 16 18 C -0.06 -1.99 7.13 42.45 0.30 -1.69 16 19 N -0.24 -6.89 11.91 -48.15 -0.57 -7.46 16 20 N -0.34 -5.72 6.86 -56.99 -0.39 -6.11 16 21 H 0.48 3.38 8.96 -219.99 -1.97 1.41 16 22 C 0.01 0.15 12.06 83.47 1.01 1.16 16 23 C -0.01 -0.20 8.03 22.48 0.18 -0.02 16 24 F -0.12 -3.69 17.03 44.97 0.77 -2.92 16 25 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.37 20.69 7.80 -92.71 -0.72 19.97 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.39 9.59 9.12 -74.05 -0.68 8.91 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.05 2.32 7.39 -2.39 -0.02 2.30 16 32 H 0.41 16.29 7.86 -92.71 -0.73 15.56 16 33 H 0.25 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -79.19 302.06 -2.16 -81.36 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -2.89 Total: 38.65 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 4.53 Total: 22.46 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -4.65 Total: -138.10 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.95 Total: -48.45 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.77 Total: -2.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -79.19 -2.16 -81.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278145686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.487 kcal (2) G-P(sol) polarization free energy of solvation -79.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds