Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35044 * 124.88001 * 2 1 4 4 C 1.35357 * 107.23126 * 179.68707 * 3 2 1 5 5 C 1.41522 * 105.50455 * 0.41464 * 4 3 2 6 6 C 1.47666 * 126.52392 * 179.84327 * 5 4 3 7 7 O 1.21572 * 119.99508 * 359.71236 * 6 5 4 8 8 N 1.34779 * 120.00338 * 179.70859 * 6 5 4 9 9 C 1.39174 * 119.99991 * 185.58532 * 8 6 5 10 10 C 1.39695 * 119.57885 * 18.94058 * 9 8 6 11 11 C 1.38639 * 119.49586 * 179.97438 * 10 9 8 12 12 C 1.38357 * 118.67409 * 359.97438 * 11 10 9 13 13 C 1.40578 * 119.12981 * 0.02562 * 12 11 10 14 14 C 1.41328 * 119.78565 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00177 * 8.93561 * 14 13 12 16 16 C 1.40029 * 120.00237 * 188.93384 * 14 13 12 17 17 N 1.30744 * 120.00365 * 196.07819 * 16 14 13 18 18 Si 1.86801 * 119.99829 * 16.07545 * 16 14 13 19 19 H 1.48501 * 109.46853 * 270.00000 * 18 16 14 20 20 H 1.48504 * 109.47184 * 29.99887 * 18 16 14 21 21 H 1.48497 * 109.47474 * 150.00485 * 18 16 14 22 22 N 1.31916 * 119.57371 * 199.19219 * 9 8 6 23 23 N 1.28466 * 124.88352 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47227 * 270.01865 * 1 2 3 25 25 H 1.08996 * 109.47435 * 30.02013 * 1 2 3 26 26 H 1.09000 * 109.46996 * 150.01862 * 1 2 3 27 27 H 1.07997 * 126.38493 * 359.97438 * 3 2 1 28 28 H 1.08000 * 127.25246 * 180.25126 * 4 3 2 29 29 H 0.97001 * 119.99405 * 5.59739 * 8 6 5 30 30 H 1.08001 * 120.25015 * 359.96854 * 10 9 8 31 31 H 1.08002 * 120.66388 * 179.97438 * 11 10 9 32 32 H 1.07992 * 120.43613 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99811 * 354.92498 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2372 1.1078 0.0000 4 6 3.5270 0.6975 0.0071 5 6 3.4741 -0.7167 0.0014 6 6 4.6271 -1.6394 0.0023 7 8 5.7595 -1.1970 0.0032 8 7 4.4241 -2.9718 0.0023 9 6 5.5050 -3.8404 0.1205 10 6 6.7176 -3.3672 0.6279 11 6 7.7931 -4.2341 0.7454 12 6 7.6301 -5.5511 0.3539 13 6 6.3848 -5.9664 -0.1490 14 6 6.2032 -7.3083 -0.5536 15 1 6.9662 -8.0434 -0.3442 16 6 5.0339 -7.6849 -1.2258 17 7 4.7139 -8.9488 -1.3231 18 14 3.9312 -6.3812 -1.9834 19 1 2.9211 -5.9464 -0.9855 20 1 4.7538 -5.2155 -2.3954 21 1 3.2420 -6.9454 -3.1716 22 7 5.3730 -5.0987 -0.2527 23 7 2.1996 -1.0538 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.8903 2.1306 -0.0004 28 1 4.4106 1.3185 0.0129 29 1 3.5245 -3.3252 -0.0803 30 1 6.8164 -2.3340 0.9263 31 1 8.7392 -3.8883 1.1349 32 1 8.4489 -6.2508 0.4335 33 1 5.3219 -9.6296 -0.9949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001288255920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = 79.742448 kcal Electronic energy + Delta-G solvation = -19826.227284 eV Core-core repulsion = 16660.868110 eV Total energy + Delta-G solvation = -3165.359174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.73549 -39.85956 -37.95731 -34.51631 -33.70684 -33.35667 -31.05350 -30.87834 -29.57114 -27.59956 -25.32157 -23.76580 -21.73387 -21.59662 -21.26535 -19.54748 -18.39099 -17.91029 -16.77164 -16.42860 -16.31501 -15.13177 -14.86839 -14.49354 -14.12515 -13.93709 -13.67214 -13.42207 -13.05605 -12.92763 -12.80315 -12.44586 -12.17189 -11.82695 -11.19152 -11.00935 -10.82512 -10.27235 -9.93175 -9.72561 -9.41469 -9.29804 -9.15989 -9.02597 -8.45769 -7.85786 -7.35215 -7.22516 -4.71098 1.48218 1.99300 2.29174 2.61656 2.73191 3.35154 3.54400 3.57367 3.71685 3.96125 4.18008 4.39509 4.60587 4.65537 4.73261 4.77016 5.03299 5.19808 5.53807 5.59569 5.64958 5.92526 6.16711 6.26111 6.51833 6.56371 6.59082 6.63491 7.19428 7.25669 7.48505 7.59214 7.66093 7.80645 7.85799 8.18169 8.34324 8.50964 8.70852 9.49763 10.02309 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.005593 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.742576 B = 5005.247549 C = 6143.057765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.286 5.286 3 C -0.022 4.022 4 C -0.175 4.175 5 C -0.012 4.012 6 C 0.606 3.394 7 O -0.506 6.506 8 N -0.642 5.642 9 C 0.384 3.616 10 C -0.309 4.309 11 C -0.036 4.036 12 C -0.277 4.277 13 C 0.275 3.725 14 C -0.482 4.482 15 H 0.084 0.916 16 C 0.051 3.949 17 N -0.805 5.805 18 Si 1.139 2.861 19 H -0.286 1.286 20 H -0.279 1.279 21 H -0.327 1.327 22 N -0.593 5.593 23 N -0.259 5.259 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.413 0.587 30 H 0.139 0.861 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 17.695 2.216 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.074 5.074 3 C -0.165 4.165 4 C -0.203 4.203 5 C -0.172 4.172 6 C 0.391 3.609 7 O -0.379 6.379 8 N -0.286 5.286 9 C 0.153 3.847 10 C -0.334 4.334 11 C -0.060 4.060 12 C -0.299 4.299 13 C 0.151 3.849 14 C -0.514 4.514 15 H 0.102 0.898 16 C -0.171 4.171 17 N -0.427 5.427 18 Si 0.973 3.027 19 H -0.213 1.213 20 H -0.207 1.207 21 H -0.259 1.259 22 N -0.318 5.318 23 N -0.095 5.095 24 H 0.103 0.897 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.200 0.800 28 H 0.182 0.818 29 H 0.249 0.751 30 H 0.156 0.844 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.503 16.908 1.158 20.482 hybrid contribution 2.270 0.380 1.217 2.604 sum -9.232 17.288 2.375 19.742 Atomic orbital electron populations 1.22186 0.73170 1.05546 1.04503 1.45432 1.07856 1.03131 1.51014 1.22850 0.90951 0.93705 1.08959 1.21784 0.97415 0.93292 1.07846 1.21893 0.90483 0.94200 1.10617 1.16777 0.86752 0.80852 0.76535 1.90720 1.21922 1.76843 1.48405 1.43082 1.10486 1.05031 1.69986 1.18055 0.86069 0.87764 0.92860 1.21526 0.93575 1.02177 1.16132 1.20910 0.96902 0.93154 0.95070 1.21615 0.98580 0.96116 1.13632 1.18188 0.86421 0.91539 0.88788 1.20652 1.05384 0.93148 1.32252 0.89798 1.27624 0.97473 0.99912 0.92069 1.70618 1.35386 1.01802 1.34874 0.82184 0.74294 0.72233 0.74030 1.21330 1.20661 1.25917 1.66185 1.34197 1.02673 1.28769 1.73595 1.03058 1.14058 1.18836 0.89665 0.88622 0.88346 0.80026 0.81824 0.75082 0.84375 0.87579 0.87683 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.31 59.84 0.68 1.12 16 2 N -0.29 -2.95 3.70 -68.13 -0.25 -3.20 16 3 C -0.02 -0.20 11.46 -17.17 -0.20 -0.40 16 4 C -0.18 -2.19 10.81 -39.36 -0.43 -2.61 16 5 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 6 C 0.61 11.76 7.66 -12.41 -0.10 11.66 16 7 O -0.51 -10.78 13.72 5.30 0.07 -10.71 16 8 N -0.64 -13.51 5.40 -12.31 -0.07 -13.58 16 9 C 0.38 9.38 7.51 -155.05 -1.16 8.22 16 10 C -0.31 -7.31 8.83 -38.89 -0.34 -7.65 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.28 -6.82 9.83 -38.66 -0.38 -7.20 16 13 C 0.27 7.46 6.27 -85.00 -0.53 6.93 16 14 C -0.48 -13.45 9.51 -37.74 -0.36 -13.81 16 15 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 16 C 0.05 1.42 5.51 -17.34 -0.10 1.32 16 17 N -0.81 -22.23 13.65 55.55 0.76 -21.47 16 18 Si 1.14 28.66 25.93 -169.99 -4.41 24.25 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -7.25 6.55 56.52 0.37 -6.88 16 21 H -0.33 -8.01 7.11 56.52 0.40 -7.60 16 22 N -0.59 -15.77 5.06 -10.27 -0.05 -15.82 16 23 N -0.26 -3.74 11.68 33.42 0.39 -3.35 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.10 0.20 8.13 -51.93 -0.42 -0.22 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.41 8.14 8.56 -40.82 -0.35 7.79 16 30 H 0.14 3.17 5.33 -52.50 -0.28 2.89 16 31 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.28 7.49 8.73 -40.82 -0.36 7.13 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -33.80 293.19 -6.24 -40.04 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.19 Total: 3.83 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.90 Total: -4.41 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.78 Total: -57.42 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 28.66 SS G_CDS: -4.41 Total: 24.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.80 -6.24 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288255920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.780 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds