Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35044 * 124.88001 * 2 1 4 4 C 1.35357 * 107.23126 * 179.68707 * 3 2 1 5 5 C 1.41522 * 105.50455 * 0.41464 * 4 3 2 6 6 C 1.47666 * 126.52392 * 179.84327 * 5 4 3 7 7 O 1.21572 * 119.99508 * 359.71236 * 6 5 4 8 8 N 1.34779 * 120.00338 * 179.70859 * 6 5 4 9 9 C 1.39174 * 119.99991 * 185.58532 * 8 6 5 10 10 C 1.39695 * 119.57885 * 18.94058 * 9 8 6 11 11 C 1.38639 * 119.49586 * 179.97438 * 10 9 8 12 12 C 1.38357 * 118.67409 * 359.97438 * 11 10 9 13 13 C 1.40578 * 119.12981 * 0.02562 * 12 11 10 14 14 C 1.41328 * 119.78565 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00177 * 8.93561 * 14 13 12 16 16 C 1.40029 * 120.00237 * 188.93384 * 14 13 12 17 17 N 1.30744 * 120.00365 * 196.07819 * 16 14 13 18 18 Si 1.86801 * 119.99829 * 16.07545 * 16 14 13 19 19 H 1.48501 * 109.46853 * 270.00000 * 18 16 14 20 20 H 1.48504 * 109.47184 * 29.99887 * 18 16 14 21 21 H 1.48497 * 109.47474 * 150.00485 * 18 16 14 22 22 N 1.31916 * 119.57371 * 199.19219 * 9 8 6 23 23 N 1.28466 * 124.88352 * 179.97438 * 2 1 3 24 24 H 1.09006 * 109.47227 * 270.01865 * 1 2 3 25 25 H 1.08996 * 109.47435 * 30.02013 * 1 2 3 26 26 H 1.09000 * 109.46996 * 150.01862 * 1 2 3 27 27 H 1.07997 * 126.38493 * 359.97438 * 3 2 1 28 28 H 1.08000 * 127.25246 * 180.25126 * 4 3 2 29 29 H 0.97001 * 119.99405 * 5.59739 * 8 6 5 30 30 H 1.08001 * 120.25015 * 359.96854 * 10 9 8 31 31 H 1.08002 * 120.66388 * 179.97438 * 11 10 9 32 32 H 1.07992 * 120.43613 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99811 * 354.92498 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2372 1.1078 0.0000 4 6 3.5270 0.6975 0.0071 5 6 3.4741 -0.7167 0.0014 6 6 4.6271 -1.6394 0.0023 7 8 5.7595 -1.1970 0.0032 8 7 4.4241 -2.9718 0.0023 9 6 5.5050 -3.8404 0.1205 10 6 6.7176 -3.3672 0.6279 11 6 7.7931 -4.2341 0.7454 12 6 7.6301 -5.5511 0.3539 13 6 6.3848 -5.9664 -0.1490 14 6 6.2032 -7.3083 -0.5536 15 1 6.9662 -8.0434 -0.3442 16 6 5.0339 -7.6849 -1.2258 17 7 4.7139 -8.9488 -1.3231 18 14 3.9312 -6.3812 -1.9834 19 1 2.9211 -5.9464 -0.9855 20 1 4.7538 -5.2155 -2.3954 21 1 3.2420 -6.9454 -3.1716 22 7 5.3730 -5.0987 -0.2527 23 7 2.1996 -1.0538 0.0005 24 1 -0.3634 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.8903 2.1306 -0.0004 28 1 4.4106 1.3185 0.0129 29 1 3.5245 -3.3252 -0.0803 30 1 6.8164 -2.3340 0.9263 31 1 8.7392 -3.8883 1.1349 32 1 8.4489 -6.2508 0.4335 33 1 5.3219 -9.6296 -0.9949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288255920.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = 56.631964 kcal Electronic energy + Delta-G solvation = -19827.229430 eV Core-core repulsion = 16660.868110 eV Total energy + Delta-G solvation = -3166.361320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.64287 -41.54690 -39.76275 -36.30819 -35.41946 -34.39620 -32.97475 -31.90457 -31.28485 -28.53150 -27.23605 -25.09708 -23.62117 -22.83695 -22.45762 -21.10692 -20.22956 -19.26981 -18.12988 -17.68596 -17.31170 -16.94157 -16.56105 -16.18071 -15.65635 -15.50093 -14.96252 -14.73032 -14.42174 -14.31780 -14.02125 -13.75438 -13.54076 -13.34212 -13.01991 -12.78503 -12.21704 -11.96977 -11.89259 -11.63004 -11.09052 -10.99214 -10.40719 -10.29166 -10.06487 -9.86992 -9.33302 -9.23159 -6.80681 0.16308 0.71956 0.84556 1.22554 1.48255 1.53962 1.63378 1.88313 1.98425 2.22479 2.38044 2.62785 3.23970 3.56391 3.87521 3.99951 4.09390 4.38804 4.43018 4.47614 4.64534 4.68867 4.71226 4.72734 4.76995 4.81211 5.27672 5.35602 5.39408 5.42085 5.71361 5.78909 5.91137 5.92898 6.22876 6.39932 6.62285 6.81062 6.98128 7.51445 7.92617 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.005593 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.742576 B = 5005.247549 C = 6143.057765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.276 5.276 3 C 0.007 3.993 4 C -0.195 4.195 5 C -0.049 4.049 6 C 0.607 3.393 7 O -0.532 6.532 8 N -0.645 5.645 9 C 0.370 3.630 10 C -0.307 4.307 11 C -0.027 4.027 12 C -0.289 4.289 13 C 0.257 3.743 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 1.170 2.830 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.317 1.317 22 N -0.610 5.610 23 N -0.284 5.284 24 H 0.102 0.898 25 H 0.136 0.864 26 H 0.094 0.906 27 H 0.237 0.763 28 H 0.170 0.830 29 H 0.417 0.583 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 20.978 2.619 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.065 5.065 3 C -0.136 4.136 4 C -0.223 4.223 5 C -0.207 4.207 6 C 0.395 3.605 7 O -0.407 6.407 8 N -0.289 5.289 9 C 0.139 3.861 10 C -0.331 4.331 11 C -0.052 4.052 12 C -0.311 4.311 13 C 0.132 3.868 14 C -0.544 4.544 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.447 5.447 18 Si 1.001 2.999 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.249 1.249 22 N -0.335 5.335 23 N -0.123 5.123 24 H 0.121 0.879 25 H 0.154 0.846 26 H 0.113 0.887 27 H 0.253 0.747 28 H 0.188 0.812 29 H 0.254 0.746 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.029 20.196 1.570 24.085 hybrid contribution 2.683 -0.386 1.165 2.950 sum -10.346 19.810 2.735 22.516 Atomic orbital electron populations 1.22690 0.70094 1.07452 1.06257 1.45992 1.09531 1.02601 1.48368 1.23579 0.89368 0.95336 1.05283 1.22046 0.99510 0.91768 1.08961 1.21511 0.90074 0.94812 1.14264 1.17317 0.87788 0.80371 0.75044 1.90665 1.23357 1.77067 1.49564 1.43175 1.09829 1.05472 1.70445 1.18429 0.87541 0.87647 0.92517 1.21865 0.93584 1.02778 1.14886 1.21338 0.98284 0.92047 0.93489 1.21817 0.98138 0.97406 1.13770 1.18423 0.87670 0.91564 0.89130 1.20666 1.05810 0.93738 1.34222 0.90820 1.28238 0.98185 1.00616 0.92117 1.70626 1.35750 1.01951 1.36332 0.81764 0.73539 0.70552 0.74028 1.20565 1.22339 1.24915 1.66156 1.34467 1.03556 1.29315 1.73523 1.02846 1.16142 1.19819 0.87938 0.84606 0.88681 0.74702 0.81225 0.74631 0.83444 0.83446 0.86284 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.31 127.77 1.44 1.89 16 2 N -0.28 -4.74 3.70 -369.47 -1.37 -6.11 16 3 C 0.01 0.10 11.46 83.53 0.96 1.06 16 4 C -0.19 -4.43 10.81 22.41 0.24 -4.18 16 5 C -0.05 -1.52 7.13 42.45 0.30 -1.21 16 6 C 0.61 23.57 7.66 86.73 0.66 24.24 16 7 O -0.53 -22.61 13.72 -3.94 -0.05 -22.66 16 8 N -0.64 -27.32 5.40 -311.13 -1.68 -29.00 16 9 C 0.37 18.13 7.51 133.28 1.00 19.13 16 10 C -0.31 -14.22 8.83 22.72 0.20 -14.02 16 11 C -0.03 -1.20 10.15 22.39 0.23 -0.97 16 12 C -0.29 -14.09 9.83 22.87 0.22 -13.87 16 13 C 0.26 14.15 6.27 40.19 0.25 14.41 16 14 C -0.51 -29.34 9.51 23.46 0.22 -29.12 16 15 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 16 C 0.03 1.51 5.51 85.29 0.47 1.98 16 17 N -0.82 -46.45 13.65 21.84 0.30 -46.15 16 18 Si 1.17 59.09 25.93 68.60 1.78 60.87 16 19 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.30 -15.53 6.55 99.48 0.65 -14.88 16 21 H -0.32 -15.30 7.11 99.48 0.71 -14.60 16 22 N -0.61 -32.72 5.06 -186.41 -0.94 -33.66 16 23 N -0.28 -7.79 11.68 -48.18 -0.56 -8.35 16 24 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.14 -0.21 8.13 -2.39 -0.02 -0.23 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.24 0.59 8.06 -2.91 -0.02 0.57 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.42 16.67 8.56 -92.71 -0.79 15.87 16 30 H 0.15 6.61 5.33 -3.18 -0.02 6.59 16 31 H 0.15 5.17 8.06 -2.91 -0.02 5.14 16 32 H 0.12 5.36 8.06 -2.91 -0.02 5.33 16 33 H 0.28 15.42 8.73 -92.71 -0.81 14.61 16 Total: -1.00 -75.42 293.19 3.95 -71.48 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.27 Total: 14.26 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 6.21 Total: -0.67 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.26 Total: -123.28 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 59.09 SS G_CDS: 1.78 Total: 60.87 kcal Total: -75.42 3.95 -71.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288255920.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.107 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds